BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G54900.1 Length=806 Score E Sequences producing significant alignments: (Bits) Value Ahg938418 jgi|Araly1|938418|scaffold_502609.1 815 0.0 Ahg930629 jgi|Araly1|930629|scaffold_303086.1 588 2e-167 Ahg336548 jgi|Araly1|336548|fgenesh1_pg.C_scaffold_1003113 403 9e-112 > Ahg938418 jgi|Araly1|938418|scaffold_502609.1 Length=556 Score = 815 bits (441), Expect = 0.0 Identities = 511/544 (94%), Gaps = 7/544 (1%) Strand=Plus/Plus Query 20 AAAATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATAACTTCGGTCGCCGTCGTCTCC 79 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 18 AAAATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATAACTCCGGTCACCGTCGTCTCC 77 Query 80 TCCTCCGTTACCAACAAGCCTCACTCTATCAGATTCTCTCTTAAACCAACGTCGGCACTC 139 |||||||| | ||||||||| |||||||| ||||||||||||||||||||| |||||||| Sbjct 78 TCCTCCGTAATCAACAAGCCACACTCTATAAGATTCTCTCTTAAACCAACGGCGGCACTC 137 Query 140 GTCGTCCATAACCATCAGCTATCGTTCTACGGTTCGAATCTCAAGCTGAAACCAACTAAA 199 | ||| || |||| ||||| |||||||||| | | ||||||||| |||||||| ||| Sbjct 138 GCCGTTCACAACCGTCAGCCATCGTTCTAC-G---G--TCTCAAGCTCAAACCAACAAAA 191 Query 200 TTCCGATGCTCAGCGTCGGCTCTTACGCCGCAACTTAAAGACACGCTGGAGAAACTGGTG 259 ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 192 TTCCGATGCTCTGCGTCGGCGCTTACGCCGCAACTTAAAGATACGCTGGAGAAACTGGTG 251 Query 260 AATTCGGAGAAAGTGGTTCTGTTTATGAAAGGAACGAGAGACTTCCCGATGTGTGGATTC 319 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 252 AATTCGGAGAAAGTGGTTCTGTTCATGAAAGGAACGAGAGATTTCCCGATGTGTGGATTC 311 Query 320 TCCAACACTGTGGTTCAGATTTTGAAGAATCTGAATGTTCCTTTCGAAGATGTGAATATT 379 |||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||| Sbjct 312 TCCAACACTGTGGTTCAGATCTTGAAGAATTTGAATGTTCCTTTTGAAGATGTGAATATT 371 Query 380 CTGGAGAATGAGATGTTGAGGCAAGGACTTAAAGAGTATTCGAATTGGCCGACGTTTCCT 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 372 CTGGAGAATGAGATGTTGAGGCAAGGACTTAAAGAGTATTCGAATTGGCCGACGTTTCCT 431 Query 440 CAGCTTTATATCGGCGGTGAGTTTTTCGGTGGTTGTGATATTACTCTTGAGGCGTTTAAG 499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 432 CAGCTTTATATCGGCGGTGAGTTTTTCGGTGGTTGTGATATTACTCTTGAGGCGTTTAAG 491 Query 500 ACTGGAGAATTGCAGGAAGAGGTGGAGAAAGCTATGTGCTCTTGATCCTGATTTCAATAC 559 | ||| |||||||||||||||||||||||||||||||||||||||| ||| || |||||| Sbjct 492 AGTGGGGAATTGCAGGAAGAGGTGGAGAAAGCTATGTGCTCTTGATTCTGGTT-CAATAC 550 Query 560 TTGG 563 |||| Sbjct 551 TTGG 554 > Ahg930629 jgi|Araly1|930629|scaffold_303086.1 Length=442 Score = 588 bits (318), Expect = 2e-167 Identities = 378/406 (93%), Gaps = 8/406 (2%) Strand=Plus/Plus Query 20 AAAATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATAACTTCGGTCGCCGTCGTCTCC 79 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 18 AAAATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATAACTCCGGTCACCGTCGTCTCC 77 Query 80 TCCTCCGTTACCAACAAGCCTCACTCTATCAGATTCTCTCTTAAACCAAC-GTCGGCACT 138 |||||||||| |||||||||||| |||||||||||||||||||||||||| | ||||||| Sbjct 78 TCCTCCGTTATCAACAAGCCTCAATCTATCAGATTCTCTCTTAAACCAACAG-CGGCACT 136 Query 139 CGTCGTCCATAACCATCAGCTATCGTTCTACGGTTCGAATCTCAAGCTGAAACCAACTAA 198 || ||| || |||| ||||| ||||||||||||| | || ||||| |||||||| || Sbjct 137 CGCCGTTCACAACCGTCAGCCATCGTTCTACGGT-C---TC--AAGCTCAAACCAACAAA 190 Query 199 ATTCCGATGCTCAGCGTCGGCTCTTACGCCGCAACTTAAAGACACGCTGGAGAAACTGGT 258 |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 191 ATTCCGATGCTCTGCGTCGGCGCTTACGCCGCAACTTAAAGATACGCTGGAGAAACTGGT 250 Query 259 GAATTCGGAGAAAGTGGTTCTGTTTATGAAAGGAACGAGAGACTTCCCGATGTGTGGATT 318 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 251 GAATTCGGAGAAAGTGGTTCTGTTCATGAAAGGAACGAGAGATTTCCCGATGTGTGGATT 310 Query 319 CTCCAACACTGTGGTTCAGATTTTGAAGAATCTGAATGTTCCTTTCGAAGATGTGAATAT 378 ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 311 CTCCAACACTGTGGTTCAGATCTTGAAGAATTTGAATGTTCCTTTCGAAGATGTGAATAT 370 Query 379 TCTGGAGAATGAGATGTTGAGGCAAGGACTTAAAGAGTATTCGAAT 424 ||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 371 TCTGGAGAATGAGATCTTGAGGCAAGGACTTAAAGAGTATTCAAAT 416 > Ahg336548 jgi|Araly1|336548|fgenesh1_pg.C_scaffold_1003113 Length=339 Score = 403 bits (218), Expect = 9e-112 Identities = 269/293 (92%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 132 CGGCACTCGTCGTCCATAACCATCAGCTATCGTTCTACGGTTCGAATCTCAAGCTGAAAC 191 ||||||||| ||| || |||| ||||| |||||||||| | | ||||| ||| |||| Sbjct 47 CGGCACTCGCCGTTCACAACCGTCAGCCATCGTTCTAC-G---G--TCTCAGGCTCAAAC 100 Query 192 CAACTAAATTCCGATGCTCAGCGTCGGCTCTTACGCCGCAACTTAAAGACACGCTGGAGA 251 |||| |||||||||||||| |||||||| |||||||||||||||||||| |||||||||| Sbjct 101 CAACAAAATTCCGATGCTCTGCGTCGGCGCTTACGCCGCAACTTAAAGATACGCTGGAGA 160 Query 252 AACTGGTGAATTCGGAGAAAGTGGTTCTGTTTATGAAAGGAACGAGAGACTTCCCGATGT 311 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 161 AACTGGTGAATTCGGAGAAAGTGGTTCTGTTCATGAAAGGAACGAGAGATTTCCCGATGT 220 Query 312 GTGGATTCTCCAACACTGTGGTTCAGATTTTGAAGAATCTGAATGTTCCTTTCGAAGATG 371 |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 221 GTGGATTCTCCAACACTGTGGTTCAGATCGTGAAGAATTTGAATGTTCCTTTCGAAGATG 280 Query 372 TGAATATTCTGGAGAATGAGATGTTGAGGCAAGGACTTAAAGAGTATTCGAAT 424 |||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 281 TGAATATTCTGGAGAATGAGATCTTGAGGCAAGGACTTAAAGAGTATTCAAAT 333 Score = 67.6 bits (36), Expect = 1e-10 Identities = 36/36 (100%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 23 ATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATA 58 |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATA 36 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29773998177 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5