BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54930.1
Length=1924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938420 jgi|Araly1|938420|scaffold_502611.1 2438 0.0
> Ahg938420 jgi|Araly1|938420|scaffold_502611.1
Length=1531
Score = 2438 bits (1320), Expect = 0.0
Identities = 1465/1534 (96%), Gaps = 14/1534 (1%)
Strand=Plus/Plus
Query 162 TTACATTTTGATTCGGAATCGAAGATGTTCAACAAAATCATAAAACTGGGTCAGAAGAAA 221
||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TTAGATTTTGAATCGAAATCGAAGATGTTCAACAAAATCATAAAACTGGGTCAGAAGAAA 62
Query 222 TTCAACAAATCAGATCAACATCACCAAGATaacaacaacaacaacaacaaTACCTCCACC 281
|||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 63 TTCAACAAATCAGATCAACATCACCAAGAT---------AACAACAAC---ACCTCCACC 110
Query 282 AACACCGTCGTTCGCGGCAGCCGTACCACCACAC-CCGCTCCATCCTCTGTTTCAAATGG 340
|||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||
Sbjct 111 AACACCGTCGTTCGCGGCAGCCGTACCACCAC-CGCCGCTCCATCTTCTGTTTCAAATGG 169
Query 341 AGAATCTCAGACAACAGCTCAATCTCCTTCACAGACACCAAACCACCCAATGTTCACAAC 400
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 170 AGAATCTCAGACAACGGCTCAATCTCCTTCACAGACACCGAACCACCCAATGTTCACATC 229
Query 401 AACACCGATCCTCGAAGTACTTCCATTGTTAAAAGACGTGTCTTCCTCAGATCGACCTCT 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 AACACCGATCCTCGAAGTACTTCCATTGTTAAAAGACGTGTCTTCCTCAGATCGACCTCT 289
Query 461 TCTCTTCATGAAGAAAGCTCACATGTGTTCTTGCCACTGCGATTTCTCTGATACTTTGAT 520
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 290 CCTCTTCATGAAGAAGGCTCACATGTGTTCTTGCCAATGCGATTTCTCTGATACTTTGAT 349
Query 521 AATGCCACGCGAGAAAGAGATCAAAAGACAGACACTCCTTGAATTGGTTGATTTCCTTCA 580
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 350 AATGCCACGCGAGAAAGAGATCAAAAGACAGACTCTTCTTGAATTGGTTGATTTCCTTCA 409
Query 581 CTCTTCTTCTGGTAAAGTCAATGAGACGATGCAGAGTGAGCTTATACGTATGGTTTCTGC 640
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 410 CTCTTCCTCTGGTAAAGTCAATGAGACGATGCAGAGTGAGCTTATACGGATGGTTTCAGC 469
Query 641 TAACATTTTCCGGTGTCTCCCACCGGCTTACCATGAGAACACTGGTGCTCCTCCTGAAGG 700
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 470 TAACATTTTCCGGTGTCTCCCACCGGCTCACCATGAGAACACTGGAGCTCCTCCTGAAGG 529
Query 701 GAATGATCCTGAAGAAGAAGAGCCTTATCTTGAGCCATGGTGGCCTCATTTGCAGCTCGT 760
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 GAATGATCCCGAAGAAGAAGAGCCTTATCTTGAGCCATGGTGGCCTCATTTGCAGCTCGT 589
Query 761 TTACGAGCTTCTTTTGCGGTATGTAGTCTCTTCCGAAATCGAACCTAAAACTGCGAAAAA 820
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 590 TTACGAGCTTCTTTTGCGGTATGTAGTGTCTTCCGAAATCGAACCTAAGACTGCGAAAAA 649
Query 821 GTTCATCAATCACACCTTTGTCTCGAGGTTACTTGATTTGTTTGACTCTGAGGATCCTAG 880
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 650 GTTCATCAATCACACCTTTGTCTCGAGGTTACTCGATTTGTTTGACTCTGAGGATCCTAG 709
Query 881 GGAGAGGGAGTATTTGAAAACTGTTCTTCATAGAATCTATGGCAAGTTTATATTTCACCG 940
||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 710 GGAGAGGGAATACTTGAAAACTGTTCTTCATAGGATCTATGGCAAGTTTATATTTCACCG 769
Query 941 ACCGTTTATCAGATGTTCGATTTATAACATTTTCTACAAGTTCTTGTATGAGACTGAAAG 1000
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 770 CCCGTTTATCAGGTGTTCCATTTATAACATTTTCTACAAGTTCTTGTATGAGACTGAGAG 829
Query 1001 GTGTATTGGCATTGGAGAGTTATTGGAGATCTTAGGAAGTGTGATCAATGGTTTTACAGT 1060
||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 830 GTGCATTGGCATTGGAGAGTTATTGGAGATCCTAGGAAGTGTGATCAATGGATTTACAGT 889
Query 1061 ACCTATGAGAGAGGAGCATAGGCTGTATCTTGTGAAAGCTATTTTGCCACTACACAAGTC 1120
||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||
Sbjct 890 ACCTATGAGAGAGGAGCATCGGTTGTATCTTGTGAAAGCTATTTTGCCACTCCACAAGTC 949
Query 1121 TAAAGGTATCTCGATTTACCACCAGCAGTTGGCGTATTGCGTGACACAGTTTGTTGAGAA 1180
||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 950 TAAGGGTATCTCGATTTACCACCAGCAGTTGGCGTATTGTGTGACACAGTTTGTGGAGAA 1009
Query 1181 AGATTATAAGTTGGCTGATACTGTGATCCGCGGGTTGTTGAAGTTTTGGCCGCTTACCAA 1240
|||||| || ||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 1010 AGATTACAAATTGGCTGATACCGTCATCCGCGGGTTGTTGAAGTTTTGGCCGCTTACGAA 1069
Query 1241 TTGTCAAAAGGAGGTTCTCTTCTTGGGAGAGTTGGAAGAAGTCTTGGATGCTACAGAGCC 1300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 TTGTCAAAAGGAGGTTCTCTTCTTGGGAGAGTTGGAAGAAGTCTTGGATGCTACAGAGCC 1129
Query 1301 CTCTGAGTTTCAGCAATGTGTTGTTCCTCTGTTTACACAGATTGGGAAATGTCTTAATAG 1360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1130 CTCTGAGTTTCAGCAATGTGTTGTTCCTCTGTTTACGCAGATTGGGAAATGTCTTAATAG 1189
Query 1361 TGCACACTTCCAGGTGGCAGAGAGAGCGCTCTTCTTGTGGAACAATGAACATATCGTAGG 1420
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1190 CGCACACTTCCAGGTGGCAGAGAGAGCTCTCTTCTTGTGGAACAATGAACATATCGTAGG 1249
Query 1421 GCTGATAGCTCAGAACAAAGACGTGATCTTTCCGATAATCTTTGAAGCGTTGGAGAGGAA 1480
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1250 CCTGATAGCTCAGAACAAAGACGTGATCTTTCCGATAATCTTTGAAGCATTGGAGAGGAA 1309
Query 1481 CATGAAAGGACATTGGAACCAAGCGGTGCATGGTCTCTCTGAGAACGTTAGAAGAATGTT 1540
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1310 CATGAAAGGACATTGGAACCAAGCCGTGCACGGTCTCTCTGAGAACGTTAGAAGAATGTT 1369
Query 1541 TCTGGAGATGGACACTGAGCTCTTTGAGGAGTGCGAGAAACAATATCTCGAGAACGAAGC 1600
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1370 TCTGGAGATGGACACTGAGCTCTTTGAGGAGTGCGAGAAACAACATCTCGAGAACGAAGC 1429
Query 1601 TAAGGCATGCGAGTTGTTGGAACAAAGAGAATTGACATGGAAGAGACTTGAAGAAGCTGC 1660
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1430 TAAGGCATGCGAGTTGCTGGAACAAAGAGAATTGACATGGAAGAGACTCGAAGAAGCTGC 1489
Query 1661 TTCTCTAGCTGCTAACTAATTCTCATTGATGACt 1694
||||||||||||||||||| || |||||| ||||
Sbjct 1490 TTCTCTAGCTGCTAACTAAATCCCATTGACGACT 1523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72295285010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5