BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G54990.1 Length=1041 Score E Sequences producing significant alignments: (Bits) Value Ahg485918 jgi|Araly1|485918|fgenesh2_kg.5__1910__AT3G54990.1 1690 0.0 > Ahg485918 jgi|Araly1|485918|fgenesh2_kg.5__1910__AT3G54990.1 Length=1041 Score = 1690 bits (915), Expect = 0.0 Identities = 1004/1046 (96%), Gaps = 10/1046 (1%) Strand=Plus/Plus Query 1 ATGTTGGATCTTAACC-TAAAGATCTTTTCTTCTTATAACG-A-A-GATCAAGATCGGAA 56 |||||||||||||||| |||| |||||||||||||| ||| | | |||||||||||||| Sbjct 1 ATGTTGGATCTTAACCTTAAA-CTCTTTTCTTCTTATGACGAAGATGATCAAGATCGGAA 59 Query 57 AGTACCATTAATGATCTCAACCACCGGTGAAGAAGAATCTAACTCATCTTCCTCCTCCAC 116 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 60 AGTACCATTAATGATCTCAACCACCGGTGAAGAAGAATCTAACTCCTCTTCCTCCTCCAC 119 Query 117 AACAGACTCTGCAGCGA-GAGATGCTTTCATCGCTTTTGGAATTCTCAAACGCGACGATG 175 |||||| |||||||| | |||||||||||||| |||||||||||||||||||||| |||| Sbjct 120 AACAGATTCTGCAGC-AGGAGATGCTTTCATCACTTTTGGAATTCTCAAACGCGATGATG 178 Query 176 ACCTTGTtcctcctcctcctcctcctcctcATAAAGAAACAGGAGATCTCTTTCCGGTGG 235 || ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 ACGTTG-T--TCCTCCTCCTCCTCCTCCTCATAAAGAAACAGGAGATCTCTTTCCGGTGG 235 Query 236 TGGCTGATGCTCGTCGGAATATAGAATTCTCCGTGGAAGACAGTCACTGGTTGAATCTTT 295 |||||||||||||||||||||| || |||||| | || |||||||||||||||||||||| Sbjct 236 TGGCTGATGCTCGTCGGAATATTGAGTTCTCCATCGAGGACAGTCACTGGTTGAATCTTT 295 Query 296 CTTCTTTACAAAGAAATACACAGAAAATGGTGAAGAAGAGCAGAAGAGGACCAAGGTCTC 355 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 296 CTTCTTTACAAAGAAATACACAGAAAATGGTGAAGAAAAGCAGAAGAGGACCAAGGTCAC 355 Query 356 GTAGCTCCCAATATCGTGGCGTCACTTTTTACCGTCGCACCGGTCGTTGGGAATCTCATA 415 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 GCAGCTCCCAATATCGTGGCGTCACTTTTTACCGTCGCACCGGTCGTTGGGAATCTCATA 415 Query 416 TTTGGGATTGTGGAAAGCAAGTTTATTTGGGCGGGTTTGATACTGCTTACGCAGCAGCAA 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 TTTGGGATTGTGGAAAGCAAGTTTATTTGGGCGGGTTTGATACTGCTTACGCAGCAGCAA 475 Query 476 GGGCTTACGACCGAGCTGCTATCAAATTCCGTGGTCTCGATGCAGACATCAATTTCGTCG 535 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 GGGCGTACGACCGAGCTGCTATCAAATTCCGTGGTCTCGATGCAGACATCAATTTCGTCG 535 Query 536 TGGATGATTATAGGCATGACATCGATAAGATGAAGAATTTAAATAAGGTGGAGTTCGTGC 595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 TGGATGATTATAGGCATGACATCGATAAGATGAAGAATTTAAATAAGGTGGAGTTCGTGC 595 Query 596 AAACACTTAGGCGAGAGAGTGCGAGTTTCGGAAGAGGAAGTTCCAAATACAAAGGCTTGG 655 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 596 AAACACTTAGGCGAGAGAGTGCGAGTTTCGGAAGAGGAAGTTCCAAATACAAAGGCTTGG 655 Query 656 CTCTTCAAAAATGCACCCAATTCAAAACTCATGATCAGATTCATCTCTTCCAAAACAGGG 715 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 656 CTCTTCAAAAATGCACCCAATTCAAAACTCATGATCAGATTCATCTCTTTCAAAACAGGG 715 Query 716 GATGGGATGCAGCAGCAATAAAATACAATGAGTTGGGAAAGGGAGAAGGAGCCATGAAGT 775 |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 716 GATGGGATGCAGCAGCAATAAAATACAATGAGGTGGGAAAGGGAGAAGGGGCCATGAAGT 775 Query 776 TTGGTGCCCATATCAAAGGAAATGGTCACAATGATCTTGAACTAAGTCTCGGAATTTCAT 835 |||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||| | Sbjct 776 TTGGTGCCCATATCAAAGGAAATGCTCACAGTGATCTTGAACTAAGTCTTGGAATTTCTT 835 Query 836 CATCATCGGAAAGTATAAAGTTGACAACAGGCGATTACTATAAGGGTATCAATCGGTCCA 895 |||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 836 CATCATCGGAAAATATAAAGTTGACAACGGGAGATTACTATAAGGGTATCAATCGGTCCA 895 Query 896 CGATGGGTTTATACGGTAAGCAATCATCGATATTTTTACCCATGGCAACCATGAAACCTC 955 ||||||||||||||||||||||||||||||||| |||||| ||||| || |||||||||| Sbjct 896 CGATGGGTTTATACGGTAAGCAATCATCGATATATTTACCTATGGCGACAATGAAACCTC 955 Query 956 TGAAGACAGTTGCAGCATCATCAGGATTCCCTTTTATCAGCATGACAAGTTCCTCTTCCT 1015 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 956 TGAAGACAGTTGCAGCATCATCAGGATTCCCATTTATCAGCATGACCAGTTCCTCTTCCT 1015 Query 1016 CCATGTCCAATTGTTTTGATCCATAG 1041 |||||||||||||||||||||||||| Sbjct 1016 CCATGTCCAATTGTTTTGATCCATAG 1041 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38732883672 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5