BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55010.1
Length=1501
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324031 jgi|Araly1|324031|fgenesh1_pm.C_scaffold_5001575 1620 0.0
Ahg948445 jgi|Araly1|948445|scaffold_800332.1 911 0.0
> Ahg324031 jgi|Araly1|324031|fgenesh1_pm.C_scaffold_5001575
Length=1167
Score = 1620 bits (877), Expect = 0.0
Identities = 1083/1180 (92%), Gaps = 23/1180 (2%)
Strand=Plus/Plus
Query 75 ATGGAAGCTCGGATTTTGCA---GTCTTCTTCTT-C--CTGTTATTCGTCTCTTTACGCT 128
|||||| ||||||||||||| |||||||||| | |||||||||||||||| || ||
Sbjct 1 ATGGAATCTCGGATTTTGCACTCTTCTTCTTCTTCCTGCTGTTATTCGTCTCTTGACACT 60
Query 129 GTCAATCGATCCCGGTTCTCTTCTGTGTCATCTCCGAAACCTTTCTCCGTCAGCTTTGCT 188
|||||||||| ||| ||| | ||||| ||||| | |||||| |||||||||||||| ||
Sbjct 61 GTCAATCGATACCGTTTCCCCTCTGTATCATCACTGAAACCGGTCTCCGTCAGCTTTACT 120
Query 189 CAGACGACGAGAACAAGGACT-CGTGTATTATCCATGTCGAAGAAAGATGGTCGCACTGA 247
|||||| |||||||||||||| | ||| | | | ||| | || |||| | |
Sbjct 121 CAGACGGCGAGAACAAGGACTAAG-GTA-TCT-CGTGT--TTTATCCAT-GTCG-A---A 170
Query 248 TAAAGATGATGACACTGATAGTCTCAATTACAAAGATTCTGGTGTTGATATCGATGCTGG 307
|||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 171 GAAAGATGATGCCACTGATAGTCTCACTTACAAAGACTCTGGTGTTGATATCGATGCTGG 230
Query 308 TG-CTGAGCTTGTTAAACGAATCGCAAAGATGGCTCCTGGAATTGGTGGATTTGGTGGTC 366
| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 231 -GACTGAGCTTGTTAAGCGAATCGCAAAGATGGCTCCTGGAATTGGTGGATTCGGTGGTC 289
Query 367 TCTTTCCATTAGGTGATAG-TTATCTTGTAGCTGGTACGGATGGTGTAGGGACTAAATTG 425
||||||||||||||||| | |||||| ||||||||||| |||||||||||||||||||||
Sbjct 290 TCTTTCCATTAGGTGAT-GATTATCTCGTAGCTGGTACCGATGGTGTAGGGACTAAATTG 348
Query 426 AAATTGGCATTTGAAACTGGAATTCATGACACCATTGGAATCGACTTGGTTGCTATGAGT 485
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 AAATTGGCATTTGAGACTGGAATTCATGACACCATTGGAATCGACTTGGTTGCTATGAGT 408
Query 486 GTGAATGATATTATTACTTCTGGTGCAAAGCCTCTGTTTTTCCTTGATTACTTTGCTACT 545
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GTGAATGATATTGTTACTTCTGGTGCAAAGCCTCTGTTTTTCCTTGATTACTTTGCTACT 468
Query 546 AGTCGTCTTGATGTAGACCTTGCTGAAAAGGTCATTAAAGGGATTGTTGAAGGTTGTCGG 605
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 469 AGTCGTCTTGATGTAGACCTTGCAGAAAAGGTCATTAAAGGGATTGTTGAAGGTTGTCGG 528
Query 606 CAATCGGAATGTGCTCTCTTAGGGGGAGAGACTGCAGAGATGCCTGACTTTTATGCAGAG 665
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 529 CAATCGGAATGTGCTCTCTTAGGGGGAGAGACTGCAGAGATGCCTGGCTTTTACGCAGAG 588
Query 666 GGCGAGTACGATCTAAGTGGGTTTGCAGTAGGCATAGTAAAGAAAACTTCAGTTATCAAC 725
||||| |||||||| ||||||||||||||||| ||||||||||||| | | |||||||||
Sbjct 589 GGCGAATACGATCTCAGTGGGTTTGCAGTAGGGATAGTAAAGAAAAATGCTGTTATCAAC 648
Query 726 GGAAAAAACATTGTGGCCGGTGATGTTCTTATTGGCCTCCCGTCTAGTGGTGTTCATTCC 785
|||||||||||||| || || |||||||||||||||||||| |||||||| |||||||||
Sbjct 649 GGAAAAAACATTGTTGCTGGAGATGTTCTTATTGGCCTCCCTTCTAGTGGCGTTCATTCC 708
Query 786 AATGGTTTTTCTCTAGTAAGAAGGGTATTGGCTCGAAGCAATCTTTCGCTGAAGGATGCG 845
|||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 709 AATGGTTTCTCTTTAGTAAGAAGGGTATTGGCTCGAAGCAATCTTTCGCTGAATGATGCG 768
Query 846 CTTCCAGGTGGATCAAGTACCCTTGGTGATGCTCTAATGGCACCCACTGTCATTTACGTG 905
|| ||||||||||||| ||| |||||||| ||| |||||||||||||||||||||| |||
Sbjct 769 CTGCCAGGTGGATCAACTACTCTTGGTGAAGCTTTAATGGCACCCACTGTCATTTATGTG 828
Query 906 AAACAGGTACTTGATATGAT-AGAAAAAGGAGGAGTGAAAGGTTTAGCTCATATCACAGG 964
|||||||||||||| || || || | | ||||||||||| || |||||||||| |||||
Sbjct 829 AAACAGGTACTTGACATAATCAGTAGA-GGAGGAGTGAAGGGGATAGCTCATATAACAGG 887
Query 965 CGGAGGTTTCACAGACAACATTCCCCGAGTCTTCCCGGACGGTTTGGGTGCTGTTATTCA 1024
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 888 CGGAGGTTTCACAGACAACATTCCCCGAGTCTTCCCGGATGGTTTGGGTGCTGTTATTCA 947
Query 1025 CACCGATGCTTGGGAACTTCCACCGTTGTTCAAGTGGATTCAACAGACTGGGAGAATAGA 1084
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 948 CACCGATGCTTGGGAACTTCCACCGTTGTTCAAGTGGATCCAACAGTCTGGGAGAATAGA 1007
Query 1085 AGACAGTGAGATGAGAAGGACGTTTAACCTGGGGATAGGGATGGTTATGGTGGTTAGTCC 1144
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 AGACAGGGAGATGAGAAGGACGTTTAACCTGGGGATAGGGATGGTTATGGTGGTTAGTCC 1067
Query 1145 AGAGGCAGCTTCACGAATACTAGAAGAAGTCAAGAATGGAGACTATGTTGCGTATCGCGT 1204
|||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1068 AGAGGCGGCTTCACGAATACTACAAGAAGCCAAGAATGGAGACTATGTTGCGTATCGCGT 1127
Query 1205 AGGAGAGGTTGTCAACGGTGAAGGCGTAAGCTATCAGTAG 1244
|||||||||| ||||||||||||||||||||||| |||||
Sbjct 1128 AGGAGAGGTTATCAACGGTGAAGGCGTAAGCTATAAGTAG 1167
> Ahg948445 jgi|Araly1|948445|scaffold_800332.1
Length=752
Score = 911 bits (493), Expect = 0.0
Identities = 657/735 (89%), Gaps = 16/735 (2%)
Strand=Plus/Plus
Query 53 TCAGTCTCATTCTGTCTCCCCCATGGAAGCTCGGATTTTGCAGTCTTCTTCTTCCTGTTA 112
|||||||| |||| |||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 1 TCAGTCTCTTTCT-CCTCCGTCATGGAAGCTCGGATTTTGCAGTCTTCTTCCTGCTGTTA 59
Query 113 TTCGTCTCTTTACGCTGTCAATCGATCCCGGTTCTCTTCTGTGTCATC-TC-C-GAAACC 169
|||||||||| || |||||||||||| ||| ||| | ||||| ||||| || | ||||||
Sbjct 60 TTCGTCTCTTGACACTGTCAATCGATACCGTTTCCCCTCTGTATCATCATCACTGAAACC 119
Query 170 TTTCTCCG-TCAGCTTTGCTCAGACGACGAGAAC------AA-GG-A-CTCGTGTATTAT 219
| ||| || |||||||| |||||||| ||||||| || || | ||||||| ||||
Sbjct 120 TCTCT-CGATCAGCTTTACTCAGACGGCGAGAACAAGGGGAAGGGTATCTCGTGTTTTAT 178
Query 220 CCATGTCGAAGAAAGATGGTCGCACTGATAAAGATGATGACACTGATAGTCTCAATTACA 279
|||||||||||||||||| | |||||||| | ||||||| ||||||||||||||||||||
Sbjct 179 CCATGTCGAAGAAAGATGATGGCACTGATGATGATGATGGCACTGATAGTCTCAATTACA 238
Query 280 AAGATTCTGGTGTTGATATCGATGCTGGTGCTGAGCTTGTTAAACGAATCGCAAAGATGG 339
||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 239 AAGATTCAGGTGTTGATATTGATGCTGGGGCTGAGCTTGTTAAACGAATCGCCAAGATGG 298
Query 340 CTCCTGGAATTGGTGGATTTGGTGGTCTCTTTCCATTAGGTGATAGTTATCTTGTAGCTG 399
|||||||||| || | ||| ||||||||||||||| ||||||||| |||||| |||||||
Sbjct 299 CTCCTGGAATCGGCGTATTCGGTGGTCTCTTTCCACTAGGTGATAATTATCTCGTAGCTG 358
Query 400 GTACGGATGGTGTAGGGACTAAATTGAAATTGGCATTTGAAACTGGAATTCATGACACCA 459
||||||||||||||||| |||| |||||||||||| |||| ||||| ||||| |||||||
Sbjct 359 GTACGGATGGTGTAGGGCCTAATTTGAAATTGGCACTTGAGACTGGCATTCACGACACCA 418
Query 460 TTGGAATCGACTTGGTTGCTATGAGTGTGAATGATATTATTACTTCTGGTGCAAAGCCTC 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTGGAATCGACTTGGTTGCTATGAGTGTGAATGATATTATTACTTCTGGTGCAAAGCCTC 478
Query 520 TGTTTTTCCTTGATTACTTTGCTACTAGTCGTCTTGATGTAGACCTTGCTGAAAAGGTCA 579
|||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||
Sbjct 479 TGTTTTTCCTAGATTACTATGCAACTAGTCGTCTTGATGTAGACCTTGCAGAAAAGGTCA 538
Query 580 TTAAAGGGATTGTTGAAGGTTGTCGGCAATCGGAATGTGCTCTCTTAGGGGGAGAGACTG 639
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 539 TTAAAGGCATTGTTGAAGGTTGTCGGCAATCGGACTGTGCTCTCTTAGGAGGAGAGACTG 598
Query 640 CAGAGATGCCTGACTTTTATGCAGAGGGCGAGTACGATCTAAGTGGGTTTGCAGTAGGCA 699
|||||||||| ||||||||||||||||| || || ||||| |||||||||||||||||||
Sbjct 599 CAGAGATGCCCGACTTTTATGCAGAGGGTGATTATGATCTCAGTGGGTTTGCAGTAGGCA 658
Query 700 TAGTAAAGAAAACTTCAGTTATCAACGGAAAAAA-CATTGTGGCCGGTGATGTTCTTATT 758
|||| |||||| |||| ||||| ||||||||||| ||| |||| || |||||||||||
Sbjct 659 TAGTTAAGAAAGCTTCTGTTATAAACGGAAAAAAACATAGTGGATGGACATGTTCTTATT 718
Query 759 GGCCTCCCGTCTAGT 773
|| ||||| ||||||
Sbjct 719 GGGCTCCCTTCTAGT 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56183111375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5