BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55040.1 Length=1100 Score E Sequences producing significant alignments: (Bits) Value Ahg938433 jgi|Araly1|938433|scaffold_502624.1 1386 0.0 > Ahg938433 jgi|Araly1|938433|scaffold_502624.1 Length=927 Score = 1386 bits (750), Expect = 0.0 Identities = 874/932 (94%), Gaps = 16/932 (2%) Strand=Plus/Plus Query 22 GAAAGTGAAAGCTGTGAGGTATGAGTGTGGGACTGAAAGTTAGCGCGTTCTTACATCCAA 81 |||||||||||||||||||||||||||||||||||||| |||||| || |||| ||||| Sbjct 1 GAAAGTGAAAGCTGTGAGGTATGAGTGTGGGACTGAAAATTAGCGTGTGCTTATATCCAT 60 Query 82 CGCTTGCGTTATCCTCGAGAGATGtctct-ctctcttcctcatcatcttctctctatctT 140 |||||||||||||| | |||||| ||||| ||| ||||||||||| |||||||||||| Sbjct 61 CGCTTGCGTTATCCGCTAGAGATTTCTCTCCTC-CTTCCTCATCA---TCTCTCTATCTT 116 Query 141 GATCGGAAAATTCTCCGACCAGGCTCCGGGAGACGGTGGTGTAAATCC---------CGA 191 |||||||||||||||||||||||||||||||| || ||||| |||||| || Sbjct 117 GATCGGAAAATTCTCCGACCAGGCTCCGGGAGGCGATGGTGCAAATCCAGTGGGAAACGT 176 Query 192 AGAACCGAACCAATATTGGCTGTTGTAGAGTCAAGTCGAGTACCGGAGCTTGATTCTTCT 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 AGAACCGAACCAATATTGGCTGTTGTAGAGTCAAGTCGAGTACCGGAGCTTGATTCTTCT 236 Query 252 TCAGAACCAGTTCAAGTATTCGATGGATCAACAAGGTTGTACATATCTTACACTTGCCCA 311 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 237 TCAGAACCAGTTCAAGTGTTCGATGGATCAACAAGGTTGTACATATCTTACACTTGCCCA 296 Query 312 TTTGCTCAGCGTGCGTGGATTGCTCGCAACTACAAGGGTCTGCAAAACAAGATAGAACTT 371 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 TTTGCTCAGCGTGCGTGGATTGCTCGCAACTACAAGGGTCTGCAAAACAAGATAGAACTC 356 Query 372 GTACCGATCGATCTTAAAAACAGGCCTGCTTGGTATAAGGAGAAAGTTTACTCGGCTAAC 431 |||||||| |||||||||||||||||||||||||||||||||||||||||| | || ||| Sbjct 357 GTACCGATTGATCTTAAAAACAGGCCTGCTTGGTATAAGGAGAAAGTTTACGCAGCCAAC 416 Query 432 AAGGTGCCTGCATTAGAGCACAATAACCGAGTATTGGGAGAGAGCCTTGATCTGATTAAG 491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 AAGGTGCCTGCATTAGAGCACAATAACCGAGTATTGGGAGAGAGCCTTGATCTGATTAAG 476 Query 492 TACATTGACACTAATTTTGAAGGGCCTTCGCTTACACCCGATGGTTTAGAGAAGCAAGTT 551 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 477 TACATTGACACTAATTTTGAAGGGCCTTCACTTACACCTGATGGTTTAGAGAAGCAAGCA 536 Query 552 GTAGCTGATGAGTTACTCTCTTACACTGACTCCTTCTCCAAGGCTGTAAGATCCACATTA 611 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 537 GTAGCTGATGAGTTACTCTCCTACACTGACTCCTTCTCCAAGGCTGTGAGATCCACATTA 596 Query 612 AACGGCACTGACACTAATGCAGCAGATGTTGCATTTGATTACATCGAGCAGGCTCTT-TC 670 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| || Sbjct 597 AACGGCACTGACAGTAATGCAGCAGATGCTGCATTTGATTACATCGAGCAGGCTCTGATC 656 Query 671 CAAATTCAATGAAGGGCCTTTCTTTCTTGGTCAATTTAGTTTGGTTGATGTTGCATATGC 730 ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 657 -AAATTCAATGAAGGGCCTTTCTTCCTTGGCCAATTTAGTTTGGTTGATGTTGCATATGC 715 Query 731 TCCTTTCATAGAGAGATTTCGGCTTATCTTAAGTGATGTGATGAACGTCGATATTACATC 790 ||| |||||||||||||||| ||||||||||||||| ||||| || || ||||| | ||| Sbjct 716 TCCATTCATAGAGAGATTTCAGCTTATCTTAAGTGACGTGATAAATGTGGATATCAAATC 775 Query 791 TGGTCGGCCTAACCTTGCCCTTTGGATTCAGGAGATGAACAAAATCGAAGCTTACACCGA 850 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 776 TGGTCGGCCTAACCTTGCCCTTTGGATTCAGGAGATGAACAAGATCGAAGCTTACACCGA 835 Query 851 AACCCGTCAAGATCCACAAGAGCTTGTTGAAAGATACAAGAGACGAGTCCAAGCAGAAGC 910 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 836 AACCCGTCAAGATCCACAAGAGCTAGTTGAAAGATACAAGAGACGAGTCCAAGCAGAAGC 895 Query 911 ACGTCTCTAACCAGATGGTTCTCCGGATATCT 942 ||||||||||||||||||| ||||||| ||| Sbjct 896 GCGTCTCTAACCAGATGGTTATCCGGATTTCT 927 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40982135775 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5