BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55080.1 Length=1536 Score E Sequences producing significant alignments: (Bits) Value Ahg324038 jgi|Araly1|324038|fgenesh1_pm.C_scaffold_5001582 2012 0.0 > Ahg324038 jgi|Araly1|324038|fgenesh1_pm.C_scaffold_5001582 Length=1422 Score = 2012 bits (1089), Expect = 0.0 Identities = 1316/1426 (92%), Gaps = 14/1426 (1%) Strand=Plus/Plus Query 68 ATGCTATTCTGCATTTCGACAGTGAAGCTTTTCGGGTTTCAACAAAGGCGCAATGTTAGC 127 |||||| |||||||| |||| |||||||| ||||||||||| ||| |||||||| ||||| Sbjct 1 ATGCTACTCTGCATTCCGACGGTGAAGCTGTTCGGGTTTCAGCAACGGCGCAATTTTAGC 60 Query 128 TCTTTAGCCAAGCGTTTCAGTCTCGCCGGGAAACT-AACGTTAGAGCTCCAAACTCAGGC 186 || ||||| ||||||||||||||| ||||||| | | | ||||||| |||||||||||| Sbjct 61 TCCTTAGCGAAGCGTTTCAGTCTCATCGGGAAA-TCACCTTTAGAGCCCCAAACTCAGGC 119 Query 187 TTCGTTGGACAATAACTTCTTACCCTGGTTAGAGCGAATTGCTGGAGCAAAGATAACTAA 246 || |||||||| ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 120 CTCTTTGGACAAGGACTTCTTACCCTGGTTAGAACGAATTGCTGGAGCAAAGATAACTAA 179 Query 247 TACTCTTTCGATTGGGAAATCCACCTATGGCAGGTCACTGTTCGCCTCCAAAGTTATCTA 306 || |||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||| | Sbjct 180 CACGCTTTCGATTGGGAAATCCACATATGGCAGGTCACTGTTTGCCTCAAAATTTATCCA 239 Query 307 TGCTGGTGACTGCATGTTGAAAGTCCCTTTTAATGCGCAAATAACTCCAGATGAGCT-CC 365 ||| || || ||||||||||||||||||||||||||||||||||||| ||||||| | || Sbjct 240 TGCCGGAGAATGCATGTTGAAAGTCCCTTTTAATGCGCAAATAACTCGAGATGAGTTGCC 299 Query 366 CCTCGGATATTAGAGTTTTATTGAGCAATGAAGTTGGGAATATCGGAATGCTTGCTGCTG 425 || ||||||||||||||| ||||| | |||||||||||||||| |||| ||||||||||| Sbjct 300 CC-CGGATATTAGAGTTTCATTGACCGATGAAGTTGGGAATATTGGAAAGCTTGCTGCTG 358 Query 426 TTCTAATAAGAGAGAAGAAAATGGGTCAAAAGTCTCGATGGGTCCCTTATATCAGCCGAC 485 ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 359 TTCTATTAAGAGAGAAGAAAACGGGTCAAAAGTCTCGATGGCTCCCTTATATCAGCCGAC 418 Query 486 TTCCTCAACCTGCAGAGATGCATAGCTCGATATTTTGGGGTGAAGATGAGCTCAGCATGA 545 |||||||||||||||||||||| ||| | ||||||||||||||||||||| ||||||||| Sbjct 419 TTCCTCAACCTGCAGAGATGCACAGCACAATATTTTGGGGTGAAGATGAGTTCAGCATGA 478 Query 546 TTCGTTGTAGTGCAGTTCACCAGGAAACAGTAAAACAAAAAGCTCAGATAGAAAAGGACT 605 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 479 TTCGTTGTAGTGCAGTTCACAAGGAAACAGTAAAACAAAAAGCTCAGATAGAAAAGGAAT 538 Query 606 TTTCATTTGTAGCGCAGGCATTCAAACAACATTGTCCCATAGTAACTGAACGCCCAGATT 665 | ||||||||||| |||||||| |||||||||| | |||| || | |||||||||| ||| Sbjct 539 TCTCATTTGTAGCACAGGCATTTAAACAACATTATACCATGGTGATTGAACGCCCATATT 598 Query 666 TGGAAGATTTCATGTATGCATATGCTTTAGTGGGATCTCGTGCGTGGGAAAACTCAAAAC 725 ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 599 TGGAAGACTTCATGTATGCATATGCTTTAGTGGGATCTCGTGCGTGGGAAACCTCAAAAG 658 Query 726 GCATATCACTGATTCCGTTTGCAGACTTCATGAACCATGATGGGCTTTCTGCATCAATCG 785 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 GCATATCTCTGATTCCGTTTGCAGACTTCATGAACCATGATGGGCTTTCTGCATCAATCG 718 Query 786 TTTTGAGGGATGAAGACAATCAACTATCAGAGGTCACTGCAGATCGCAACTACAGTCCTG 845 ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| | Sbjct 719 TTTTGAGCGATGAAGACAATCAACTATCAGAGGTCACAGCAGATCGTAACTACAGTCCCG 778 Query 846 GTGATGAGGTATTCATCAAGTATGGGGAATTCTCAAATGCTACACTCATGTTAGATTTTG 905 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 GTGATGAGGTGTTCATTAAGTATGGGGAATTCTCAAATGCTACACTCATGTTAGATTTTG 838 Query 906 GATTTACCTTTCCTTACAACATTCATGACGAGGTTCAAATCCAAATGGATGTACCGAATG 965 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 GATTTACCCTTCCTTACAACATTCATGACGAGGTTCAAATCCAAATGGATGTACCGAATG 898 Query 966 ATGATCCTCTTCGCAACATGAAGCTGGGACTTCTCCAGACACATCACACTCGAACTGTCA 1025 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 ATGATCCTCTTCACGACATGAAGCTGGGACTTCTCCAGACACATCACACTCGAACTGTCA 958 Query 1026 AAGATATCAATATCTTTCACTCTTCTTGTGATACTTTCACAATCAAGGAAGTGAAATCTG 1085 ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 959 AAGATATCAATATATTTCACTCGTCTTGTGATACTTTCACGATCAAGGAAGTGAAATCTA 1018 Query 1086 CTAT-AGGGAAAGGAAAAGGCATTCCACAATCTCTCCGTGCATTTGCTCGTGTTCTCTGT 1144 || | ||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1019 CT-TCAGGAAAAGGGAGAGGAATTCCACAATCTCTCCGTGCATTTGCTCGTGTTCTCTGT 1077 Query 1145 TGTATCATTCCCCAAGAGCTAAATGATTTGTCAAAAGAAGCTGCACAAAATGATGGCCGA 1204 |||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1078 TGTACCATTCCTCAAGAGCTGAATGATTTGTCAAAAGAAGCTGCACAAAATGATGGCCGA 1137 Query 1205 CTAGCTCGGCTTCCTTTTAAAGACGGGAACAGAGAGTTGGAGGCACATAAGATCCTCTTG 1264 |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| Sbjct 1138 CTAGCTCGGCTTCCTTTTAAAGACAGGAGTAGAGAGTTGGAGGCACATAAGATCCTTTTG 1197 Query 1265 TCTCACATCAACAGATTGATTGAGGATCATAGTGTTTGCATCAAGGAAATGGAAGAAT-- 1322 ||||| ||||||||||| |||||||||||||||| ||||||||||||| ||||||||| Sbjct 1198 TCTCATATCAACAGATTAATTGAGGATCATAGTGCTTGCATCAAGGAACTGGAAGAATCT 1257 Query 1323 ----GCTATTTTGTATCACAAAGATTTGCTGTTAGAAGGCAGATGGCAAGAGATCTCCTA 1378 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1258 AAATGCTATTTTGTATCACAAAGATTTGCTGTTAGAAGGAAGATGGCAAGAGATCTCCTA 1317 Query 1379 TACGGTGAGCTTCGTGTACTGAGATCTGCAGCTGAATGGCTCAATCATTATTGCACAACC 1438 | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 TCCGGTGAGCTTCGTGTTCTGAGATCTGCAGCTGAATGGCTCAATCATTATTGCACAACC 1377 Query 1439 TTGCTTTCAGAGACAAT-GTAATCGATTTTACAGTCTCTACGATAG 1483 ||| |||||| ||| | | || || ||||||||||||||| |||| Sbjct 1378 TTGTTTTCAGTGACT-TCGAAACCGGTTTTACAGTCTCTACAATAG 1422 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57516269950 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5