BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55120.1 Length=930 Score E Sequences producing significant alignments: (Bits) Value Ahg485933 jgi|Araly1|485933|fgenesh2_kg.5__1925__AT3G55120.1 1044 0.0 > Ahg485933 jgi|Araly1|485933|fgenesh2_kg.5__1925__AT3G55120.1 Length=853 Score = 1044 bits (565), Expect = 0.0 Identities = 721/796 (91%), Gaps = 12/796 (2%) Strand=Plus/Plus Query 26 TTATCAATCGAAATTCCAACCGACTCAACAATGTC-TTCATCCAACGCCTGCGCCTCTCC 84 |||||||||||||||| ||||||||||| |||||| ||| | | | | || |||||| Sbjct 1 TTATCAATCGAAATTCGAACCGACTCAATAATGTCTTTC-T-C-A----TCCGTCTCTCC 53 Query 85 GTCACCGTTCCCCGCCGTCACGAAGCTTCATGTAGACTCCGTCACGTTTGTA-CCGTCCG 143 ||| | ||||||| |||||||||||||||| || |||||||||||||||| | ||||||| Sbjct 54 GTCGCAGTTCCCCTCCGTCACGAAGCTTCAGGTCGACTCCGTCACGTTTG-ATCCGTCCG 112 Query 144 TCAAGTCACCGGCCTCCTCCAATCCATTATTCCTCGGCGGCGCCGGTGTCCGAGGCCTTG 203 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 113 TCAAGTCGCCTGCCTCCTCCAATCCATTATTCCTCGGCGGCGCCGGTGTCCGAGGCCTTG 172 Query 204 ATATCCAAGGTAAATTCGTGATCTTCACCGTCATTGGAGTATACCTAGAGGGTAACGCCG 263 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 173 ATATCCAAGGAAAATTCGTTATCTTCACCGTCATTGGAGTATACCTAGAGGGTAACGCCG 232 Query 264 TTCCTTCTCTATCTGTCAAGTGGAAGGGAAAAACTACGGAGGAGCTAACAGAATCTATCC 323 ||||||| || || | ||||||||||| ||||||||||||||||||||||| || ||| Sbjct 233 TTCCTTCACTCTCCCTTAAGTGGAAGGGCAAAACTACGGAGGAGCTAACAGAGTCGGTCC 292 Query 324 CGTTCTTCCGTGAAATAGTCACCGGTGCGTTTGAGAAGTTTATCAAGGTGACAATGAAAC 383 |||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||| Sbjct 293 CGTTCTTCCGTGAAATCGTCACAGGTGCGTTTGAGAAGTTTATCAAAGTGACGATGAAAC 352 Query 384 TGCCGTTAACGGGACAACAATATTCGGAGAAAGTGACGGAGAATTGTGTGGCTATATGGA 443 ||||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||| Sbjct 353 TGCCGTTAACGGGACAACAATATTCCGAGAAAGTGACGGAAAACTGTGTGGCTATTTGGA 412 Query 444 AA-CAATTAGGGCTTTATACGGACTGTGAAGCTAAAGCTGTGGAGAAGTTCTTGGAGATC 502 || | |||||| |||||||||| |||||||| ||||||||||||||||| ||||||||| Sbjct 413 AATC-CTTAGGGATTTATACGGATTGTGAAGCCAAAGCTGTGGAGAAGTTTTTGGAGATC 471 Query 503 TTCAAGGAAGAAACATTCCCTCCCGGTTCATCGATCCTCTTCGCTCTCTCCCCTACCGGC 562 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 472 TTCAAGGAAGAAACATTCCCTCCCGGTTCATCGATCCTCTTCGCTCTCTCCCCAACCGGC 531 Query 563 TCTCTTACGGTTGCGTTTTCGAAAGATGATAGTATCCCTGAAACCGGGATCGCTGTGATC 622 |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| Sbjct 532 TCTCTTACGGTTGCGTTTTCTAAAGATGATAGTATCCCTGAAACCGGGTTCGCTGTCATC 591 Query 623 GAGAACAAATTGTTGGCGGAGGCGGTTCTGGAATCTATCATCGGGAAGAACGGTGTGTCA 682 |||||||||||||||||||||||||||||||| || || |||||||||||||| ||||| Sbjct 592 GAGAACAAATTGTTGGCGGAGGCGGTTCTGGAGTCAATTATCGGGAAGAACGGAGTGTCG 651 Query 683 CCTGGCACTAGGTTAAGTGTTGCAGAAAGATTATCTCAGCTAATGATGAAGAACAAGGAC 742 ||||| |||||||| ||| ||||||| |||||| || | || |||| ||||||||||| Sbjct 652 CCTGGGACTAGGTTGAGTATTGCAGAGAGATTAGCTAAACTGATGACGAAGAACAAGGTT 711 Query 743 GAAAAGGAAGTTAGTGATCACTCTGTTGAGGAAAAACTAGCCAAAGAGAACTGAGAATGA 802 ||| |||| | ||| |||||||| |||| || ||||||||||||||||||||||||||| Sbjct 712 GAAGAGGACGCTAGCAATCACTCTATTGATGAGAAACTAGCCAAAGAGAACTGAGAATGA 771 Query 803 TAGatttttcttgtgt 818 |||||||||||||||| Sbjct 772 TAGATTTTTCTTGTGT 787 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34501239885 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5