BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55130.1
Length=2513
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938442 jgi|Araly1|938442|scaffold_502633.1 3262 0.0
Ahg485932 jgi|Araly1|485932|fgenesh2_kg.5__1924__AT3G55110.1 1775 0.0
Ahg488177 jgi|Araly1|488177|fgenesh2_kg.6__1311__AT5G13580.1 327 2e-88
> Ahg938442 jgi|Araly1|938442|scaffold_502633.1
Length=2231
Score = 3262 bits (1766), Expect = 0.0
Identities = 2077/2226 (93%), Gaps = 26/2226 (1%)
Strand=Plus/Plus
Query 81 AAACTCTAAACGACGCCGTCCGATGAATCTATCACTCAGCGGTAGAAAGATTGCCATGAC 140
|||| |||||||||||||| |||||||| ||||||| |||||||||||||||||||||||
Sbjct 2 AAACCCTAAACGACGCCGTACGATGAATTTATCACTTAGCGGTAGAAAGATTGCCATGAC 61
Query 141 ACGTGTTTCGGCGGAAACTCAGTATATCACTCCCATCGGATCACCAACCCTCGACGAGTT 200
||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct 62 ACGTGTTTCGGCGGAAACTCAGTGTATCACTCCCATCGGATCACCAACGCTCGAAGAGTT 121
Query 201 GCTGAAAGACTGCGACAGTTTCCGAAAAGGAGATTCCGGCGACGGCGTAAAAAGCGACGA 260
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 122 GCTGAAAGACTGCGACAGTTTCCGCAAAGGAGATCCCGGCGACGGCGTAAAAAGCGACGA 181
Query 261 TCCTGCACATCACATAATAGATGTCGAAGCCTTGTACGTAAAACCTGTCCCGTACGTCTT 320
||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 182 TCCGGCTCATCACATAATAGATGTTGAAGCCTTGTACGTAAAACCTGTTCCGTACGTCTT 241
Query 321 AAACTTTAACAATCTTCAATACGATGTCACACTTCGCCGGCGGTTTGGCTTCTCACGGC- 379
| ||||||||||||| |||||||||| | ||| || || || |||| ||||| ||||
Sbjct 242 AGCCTTTAACAATCTTGAATACGATGTTATACTACGACGTCGTTTTGATTTCTCCCGGCG 301
Query 380 AA-AA----CG---GAGTAAAGACTCTACTCGATGATGTTTCCGGAGAGGCTTCTGACGG 431
|| || || ||| ||||||||||||| || ||||||||| ||||||| ||||||
Sbjct 302 AAGAAGCTCCGCTTCAGTGAAGACTCTACTCGGTGGTGTTTCCGGCGAGGCTTGTGACGG 361
Query 432 CGATATCCTCGCCGTTCTCGGTGCAAGTGGAGCAGGAAAATCAACGTTGATCGATGCACT 491
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
Sbjct 362 CGATATCCTCGCCGTTCTTGGTGCAAGTGGAGCAGGGAAATCAACGTTGATCGATGCATT 421
Query 492 AGCGGGGAGAGTTGCTGAGGGAAGCTTGAGAGGCTCTGTAACTCTAAACGGAGAGAAAGT 551
||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||
Sbjct 422 AGCGGGGAGAGTTGCGGAGGGAAGCTTGAGAGGCACGGTAACTCTAAACGGAGAGAAAGT 481
Query 552 TTTGCAATCTCGATTGTTGAAAGTTATATCGGCGTATGTTATGCAAGACGATCTTCTTTT 611
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 482 TTTGCAATCTCGATTGTTGAAAGTGATCTCGGCGTATGTGATGCAAGACGATCTTCTTTT 541
Query 612 TCCGATGCTCACCGTTAAAGAAACCCTAATGTTCGCTTCCGAGTTTCGTCTCCCGAGAAG 671
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 CCCGATGCTCACCGTGAAAGAAACCCTAATGTTCGCTTCCGAGTTTCGTCTCCCGAGAAG 601
Query 672 TTTGTCTAAGTCGAAGAAGATGGAGCGTGTTGAAGCCCTAATTGATCAATTAGGGTTAAG 731
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 602 TTTGTCTAAGTCGAAGAAGATGGAGCGTGTTGCAGCCCTCATTGATCAATTAGGGTTAAG 661
Query 732 AAACGCGGCGAACACGGTAATCGGAGACGAAGGACACCGTGGAGTTTCTGGAGGAGAGAG 791
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 662 AAACGCGGCGAACACGGTAATCGGAGACGAAGGACACCGTGGAGTCTCTGGAGGAGAGAG 721
Query 792 ACGGCGCGTTTCAATCGGAATCGATATTATACACGATCCTATCGTCTTGTTCCTCGACGA 851
|||||| |||||||| |||||||||||||| ||||||||||||||| |||| || |||||
Sbjct 722 ACGGCGTGTTTCAATAGGAATCGATATTATCCACGATCCTATCGTCCTGTTTCTTGACGA 781
Query 852 ACCAACGTCGGGGCTGGATTCTACAAACGCGTTTATGGTGGTGCAAGTTTTGAAACGAAT 911
|||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 782 ACCAACGTCGGGATTGGATTCCACTAACGCGTTTATGGTGGTGCAAGTTTTGAAACGAAT 841
Query 912 TGCTCAAAGTGGCAGTATCGTAATTATGTCGATCCATCAACCTAGTGCTCGAATCGTGGA 971
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 842 TGCTCAAAGTGGCAGTATCGTAATTATGTCGATCCATCAACCTAGTGCTCGAATAGTGGA 901
Query 972 GTTGCTTGATCGGCTTATCATTCT-ATCTCGTGGCAAAAGTGTGTTCAATGGATCTCCGG 1030
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 902 GTTGCTTGATCGGCTTATCAT-CTTATCTCGTGGCAAAAGTGTGTTCAATGGATCTCCGG 960
Query 1031 CGAGTCTTCCCGGATTCTTCTCCGACTTCGGTCGTCCGATCCCGGAGAAAGAGAACAT-A 1089
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 961 CTAGTCTTCCCGGATTCTTCTCCGACTTCGGTCGACCGATCCCGGAGAAAGAGAACATCA 1020
Query 1090 TCAGAGTTCGCACTTGATTTAGTTCGAGAGCTTGAAGGATCCAATGAAGGTACGAAAGCT 1149
||||||||||||||||||||||||||||||| |||||||||||| |||| || ||||||
Sbjct 1021 -CAGAGTTCGCACTTGATTTAGTTCGAGAGCTCGAAGGATCCAATCAAGGAACTAAAGCT 1079
Query 1150 TTAGTAGACTTCAACGAAAAGTGGCAACAAAACAAGATCAGCCTGATCCAATCTGCTCCA 1209
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1080 TTAGTAGACTTCAACGAAAAGTGGCAACAAAACAAGATCAGTCTCATCCAATCTGCTCCA 1139
Query 1210 CAAACCAATAAGCTCGA-CCAAGACCGTTCATTATCTTTAAAAGAAGCCATTAATGCGAG 1268
||||||||| ||||||| ||| ||||| |||||||||||||||||||||| ||||| ||
Sbjct 1140 CAAACCAATGAGCTCGAGCCA-GACCGCGCATTATCTTTAAAAGAAGCCATCAATGCAAG 1198
Query 1269 TGTTTCTAGAGGCAAACTAGTCTCAGGCTCATCTAGATCCAATCCCACTTCCATGGAAAC 1328
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1199 TGTTTCTAGAGGCAAACTAGTCTCAGGCTCATCTAGATCCAATCCCACTTCGATGGAAAC 1258
Query 1329 AGTATCTTCATACGCAAACCCGTCGTTGTTCGAAACATTCATCTTAGCCAAACGGTACAT 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1259 AGTATCTTCATACGCAAACCCGTCGTTGTTCGAAACATTCATCTTAGCCAAACGGTATAT 1318
Query 1389 GAAAAACTGGATCCGGATGCCTGAGCTAGTAGGAACAAGGATTGCTACGGTAATGGTGAC 1448
||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||||||
Sbjct 1319 GAAAAACTGGATCCGGATGCCCGAGCTAGTAGGAACGCGGATCGCTACCGTAATGGTGAC 1378
Query 1449 TGGTTGTCTTTTAGCAACTGTGTATTGGAAGCTAGACCACACTCCAAGAGGAGCACAAGA 1508
||||| ||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1379 TGGTTCTCTCTTAGCCACTGTTTATTGGAAGCTAGACCACACCCCAAGAGGAGCACAAGA 1438
Query 1509 GAGATTGACTTTGTTCGCATTTGTCGT-CCCAACAATGTTCTATTGTTGTTTAGACAATG 1567
||||||||| ||||||||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 1439 GAGATTGACCTTGTTCGCATTCGTCGTGCCCA-CAATGTTCTATTGTTGTTTAGACAATG 1497
Query 1568 TCCCCGTTTTTATCCAAGAACGATACATTTTCTTAAGAGAGACAACACACAACGCGTACA 1627
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1498 TCCCCGTTTTTATCCAAGAACGATACATTTTCTTAAGAGAGACAACACACAATGCTTACA 1557
Query 1628 GAACATCTTCATACGTCATATCACACTCTCTTGTGTCCCTGCCTCAGCT-ACTTGCACCT 1686
||||||||||||| |||||||| |||||||| ||||| || |||||||| | |||| |||
Sbjct 1558 GAACATCTTCATATGTCATATCTCACTCTCTAGTGTCTCTTCCTCAGCTCA-TTGCCCCT 1616
Query 1687 TCCTTGGTATTTTCCGCGATCACATTCTGGACCGTTGGATTGAGCGGGGGATTAGAGGGT 1746
||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1617 TCCTTAGTATTTTCCGCGATCACATTCTGGACGGTTGGATTGAGCGGCGGATTAGAGGGT 1676
Query 1747 TT-TGTCTTCTATTGCCTCCTAATCTATGCCTCCTTTTGGTCTGGATCTTCCGTCGTTAC 1805
|| | |||| ||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1677 TTCT-TCTTTTATTGCCTCCTGATCTATGCCTCCTTTTGGTCTGGATCTTCCGTTGTCAC 1735
Query 1806 CTTTATATCCGGTGTTGTTCCGAATATCATGTTATGTTACATGGTCT-CCATTACCTATC 1864
||| ||||| |||||||||||| |||||||||||||||||||||| | ||||||||||||
Sbjct 1736 CTTCATATCAGGTGTTGTTCCGCATATCATGTTATGTTACATGGT-TGCCATTACCTATC 1794
Query 1865 TCGCCTACTGTTTACTGTTGAGTGGATTCTACGTCAACCGAGATCGAATACCGTTTTATT 1924
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1795 TCGCCTACTGTTTACTGTTGAGTGGATTCTACGTCAACCGAGATCGAATACCGTTTTACT 1854
Query 1925 GGACGTGGTTTCATTACATTTCAATT-CTCAAGTATCCGTATGAGGCTGTCTTAATCAAC 1983
|||| ||||||||||| |||||| || ||||||||||| |||||||| ||||| ||||||
Sbjct 1855 GGACATGGTTTCATTATATTTCA-TTGCTCAAGTATCCCTATGAGGCAGTCTTGATCAAC 1913
Query 1984 GAGTTTGATGACCCGTCTCGTTGTTTTGTTAGGGGTGTCCAGGTTTTCGACAGTACTCTT 2043
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1914 GAGTTTGATGACCCGTCTCGTTGTTTTGTTAAGGGAGTCCAGGTTTTCGACAGTACTCTT 1973
Query 2044 CTCGGGGGAGTGTCTGACTCCGGGAAGGTTAAGCTCCTTGAAACTCTCAGTAAATCTCTG 2103
||||| ||||||||||| ||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 1974 CTCGGAGGAGTGTCTGATTCCGGGAAGGTTAAGCTTCTTGAAACTCTCAGTGATTCTCTG 2033
Query 2104 AGAACGAAGATAACGGAGTCCACATGCTTGAGGACGGGGTCTGACTTACTTGCACAACAG 2163
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2034 AGAACGAGGATAACGGAGTCCACATGCTTGAGGACTGGGTCTGACTTACTTGCACAGCAA 2093
Query 2164 GGTATTACGCAATTGAGCAAGTGGGATTGCTTGTGGATTACGTTTGCTTCAGGTCTCTTC 2223
|||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2094 GGTATTACTCAATTGAACAAGTGGGATTGCTTGTGGATTACGTTTGCTTCGGGTCTCTTT 2153
Query 2224 TTTAGGATCTTATTTTACTTCGCCTTGCTGTTTGGGAGCAGGAATAAGAGGACGTGA-GG 2282
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 2154 TTTAGGATCTTATTTTACTTCGCCTTGCTGTTCGGGAGCAGGAATAAGAGGACGTGAAGG 2213
Query 2283 TTACTA 2288
||||||
Sbjct 2214 TTACTA 2219
> Ahg485932 jgi|Araly1|485932|fgenesh2_kg.5__1924__AT3G55110.1
Length=2493
Score = 1775 bits (961), Expect = 0.0
Identities = 1669/2001 (83%), Gaps = 88/2001 (4%)
Strand=Plus/Plus
Query 317 TCTTAAACTTTAACAATCTTCA-ATACGATGTCACACTTCGCCGGCGGTTTGGCTTCTCA 375
||||| ||| ||||||| ||| ||| ||||| |||||||||| |||||| |||||
Sbjct 344 TCTTATCCTTCAACAATC-TCAGTTACAATGTCGTACTTCGCCGGTGGTTTGATTTCTCC 402
Query 376 CGGC-AAA-A-CG---GAGTAAAGACTCTACTCGATGATGTTTCCGGAGAGGCTTCTGAC 429
|| | ||| | || || |||||| ||||||||||| || | || ||||||| ||||
Sbjct 403 CGACGAAAGACCGCTTCCGTGAAGACTTTACTCGATGATATTACAGGTGAGGCTTGTGAC 462
Query 430 GGCGATATCCTCGCCGTTCTCGGTGCAAGTGGAGCAGGAAAATCAACGTTGATCGATGCA 489
|| || |||||||||||||| |||| ||| ||||| |||||||| || ||||| || |||
Sbjct 463 GGAGAAATCCTCGCCGTTCTGGGTGGAAGCGGAGCTGGAAAATCCACTTTGATAGACGCA 522
Query 490 CTAGCGGGGAGAGTTGCTGAGGGA-AGCTTGAGAGGCTCTGTAACTCTAAACGGAGAGAA 548
|||| || ||||| || || ||| ||| |||||||| | ||||||||||||||||||||
Sbjct 523 TTAGCCGGAAGAGTGGCGGA-GGATAGCCTGAGAGGCACGGTAACTCTAAACGGAGAGAA 581
Query 549 AGTTTTGCAATCTCGATTGTTGAAAGTTATATCGGCGTATGTTATGCAAGACGATCTTCT 608
||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 582 AGTTTTGCAATCTCGATTGTTGAAAGTGATCTCGGCGTATGTGATGCAAGACGATCTTCT 641
Query 609 TTTTCCGATGCTCACCGTTAAAGAAACCCTAATGTTCGCTTCCGAGTTTCGTCTCCCGAG 668
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 642 TTTTCCGATGCTCACCGTCAAAGAAACCCTAATGTTCGCTTCCGAGTTTCGTCTCCCGAG 701
Query 669 AAGTTTGTCTAAGTCGAAGAAGATGGAGCGTGTTGAAGCCCTAATTGATCAATTAGGG-T 727
||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 702 AAGTTTGCCTAAATCGAAGAAGATGGAGCGTGTTGAAACCCTAATTGATCAATTAGGGCT 761
Query 728 TAAGAAACGCGGCGAACACGGTAATCGGAGACGAAGGACACCGTGGAGTTTCTGGAGGAG 787
|| ||||||||||| | |||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 762 TA-GAAACGCGGCGGATACGGTAATCGGAGATGAAGGACACCGTGGAGTCTCTGGCGGAG 820
Query 788 AGAGACGGCGCGTTTCAATCGGAATCGATATTATACACGATCCTATCGTCTTGTTCCTCG 847
|| |||||||||| |||||||| || ||||| || |||||||||||| || | |||||||
Sbjct 821 AGCGACGGCGCGTGTCAATCGGGATTGATATCATCCACGATCCTATCCTCCTCTTCCTCG 880
Query 848 ACGAACCAACGTCGGGGCTGGATTCTACAAACGCGTTTATGGTGGTGCAAGTTTTGAAAC 907
||||||||||||||||| | || || || || ||||||||||||||||| ||||||||||
Sbjct 881 ACGAACCAACGTCGGGGTTAGACTCCACCAATGCGTTTATGGTGGTGCAGGTTTTGAAAC 940
Query 908 GAATTGCTCAAAGTGGCAGTATCGTAATTATGTCGATCCATCAACCTAGTGCTCGAATCG 967
||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 941 GAATTGCGCAGAGTGGCAGTATTGTAATTATGTCGATTCATCAACCTAGTGCTCGTATCA 1000
Query 968 TGGAGTTGCTTGATCGGCTTATCATTCT-ATCTCGTGGCAAAAGTGTGTTCAATGGATCT 1026
| || ||||||||||||||||| || || ||||| || || |||||||||||||||||
Sbjct 1001 TTGATTTGCTTGATCGGCTTATTAT-CTTATCTCACGGGAAGAGTGTGTTCAATGGATCA 1059
Query 1027 CCGGCGAGTCTTCC--CGGATTCTTCTCCGACTTCGGTCGTCCGATCCCGGAGAAAGAGA 1084
||||| |||||||| || ||||||||| |||| |||||||| || |||||||||||||
Sbjct 1060 CCGGCTAGTCTTCCTTCG--TTCTTCTCCAACTTTGGTCGTCCCATTCCGGAGAAAGAGA 1117
Query 1085 ACAT-ATCAGAGTTCGCACTTGATTTAGTTCGAGAGCTTGAAGGATCCAATGAAGGTACG 1143
|||| | ||||||||||||||||| || ||||||| |||||||||||| |||||| ||
Sbjct 1118 ACATCA-CAGAGTTCGCACTTGATGTAATTCGAGAACTTGAAGGATCCTCTGAAGGAAC- 1175
Query 1144 AA-AGCTTTAGTAGACTTCAACGAAAAGTGGCAACAAAACAAGATCAGCCTGATCCAATC 1202
|| || ||||||||| |||||||||||||||||||| ||| | ||| || | | |
Sbjct 1176 AAGAGGTTTAGTAGAGTTCAACGAAAAGTGGCAACAGAACCA-ATCTGC-T---CGA--- 1227
Query 1203 TGCTCCACAA-ACCAATAAGCTCGACCAAGACCGTTCATTATCTTTAAAAGAAGCCATTA 1261
|| | |||| || || | | | | | | || || |||| ||| |||||||| |
Sbjct 1228 -GC-C-ACAACAC-AA-A-G-T-G-----G-C-GT--ATC-TCTT-AAA-GAAGCCATCA 1267
Query 1262 ATGCGAGTGTTTCTAGAGGCAAACTAGTCTCAGGCTCATCTAGATCCAATCCCACTTCCA 1321
||| |||||||||||||| ||||||||||||||||||||| || ||||||| ||| |
Sbjct 1268 CTGCAAGTGTTTCTAGAGGGAAACTAGTCTCAGGCTCATCTGGAGCCAATCCTGTTTCAA 1327
Query 1322 TGGAAACAGTATCTTCATACGCAAACCCGTCGTTGTTCG-AAACATTCATCTTAGCCAAA 1380
||||||||||||||||||||||||||||| | ||| || ||||||| ||||||||||||
Sbjct 1328 TGGAAACAGTATCTTCATACGCAAACCCGCCATTGG-CGGAAACATTTATCTTAGCCAAA 1386
Query 1381 CGGTACATGAA-AAACTGGATCCGGATGCCTGAGCT-AGTAGGAACAAGGATTGCTACGG 1438
|||||||| || |||||||||||| | ||| ||||| | |||||| |||| ||||| |
Sbjct 1387 CGGTACAT-AAGAAACTGGATCCGCACGCCGGAGCTTA-TAGGAATGCGGATCGCTACTG 1444
Query 1439 TAATGGTGACTGGT-TGTCTTTTAGCAACTGTGTATTGGAAGCTAGACCACACTCCAAGA 1497
| |||||||| ||| | ||| ||||| ||| | ||||||| ||| ||| |||||||||||
Sbjct 1445 TCATGGTGACCGGTCT-TCTCTTAGCCACTATATATTGGAGGCTTGACAACACTCCAAGA 1503
Query 1498 GGAGCACAAGAGAGATTGA-CTTTGTTCGCATTTG-TC-GTCCCAACAATGTTCTATTGT 1554
|| |||||||||||| || ||| ||||| || | | |||| | || ||||||| |||
Sbjct 1504 GGTGCACAAGAGAGAATGGGCTTC-TTCGCGTTCGGTATGTCC-ACCA-TGTTCTACTGT 1560
Query 1555 TGTTTAGACAATGTCCCCGTTTTTATCCAAGAACGATACATTTTCTTAAGAGAGACAACA 1614
||| ||||| |||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1561 TGTGCGGACAACATCCCTGTTTTTATCCAAGAACGATACATTTTCTTGAGAGAGACAACG 1620
Query 1615 CACAACGCGTACAGAACATCTTCATACGTCATATCACACTCTCTTGTGTCCCTGCCTCAG 1674
||||| || ||||||||||||||||| |||||||| ||| | ||||||||||||||||||
Sbjct 1621 CACAATGCATACAGAACATCTTCATATGTCATATCTCACGCCCTTGTGTCCCTGCCTCAG 1680
Query 1675 CTACTTGCAC-CTTCC-TTGGTATTTTCCGCGATC-ACATTCTGGACCGTTGGATTGAGC 1731
|||||||| | || || ||| |||| | || | | ||||| ||||| ||||| ||||||
Sbjct 1681 CTACTTGCTCTCT-CCATTGC-ATTTGCTGCAA-CGACATTTTGGACTGTTGGTTTGAGC 1737
Query 1732 GG-GGGATTAGAGGGTTT-TGTCTTCTATTGCCTCCTAATCTATGCCTCCTTTTGGTCTG 1789
|| ||| |||||| |||| | || ||| |||||| ||||||| || ||||||||||||
Sbjct 1738 GGCGGG-TTAGAGAGTTTCTA-CTACTACTGCCTCATAATCTACGCAGCCTTTTGGTCTG 1795
Query 1790 GATCTTCCGTCGTTACCTTT-ATATCCGGTGTTGTTCCGAATATCATGTT-ATGTTACAT 1847
| || ||| | ||||| ||| ||||||||| || |||||||| ||||| | | |||||||
Sbjct 1796 GTTCCTCCATTGTTAC-TTTCATATCCGGTCTTATTCCGAATGTCATGATGA-GTTACAT 1853
Query 1848 GGTCTCCATTACCTATCTCGCCTACTGTTTACTGTTGAGTGGATTCTACGTCAACCGAGA 1907
|| | | ||| ||||||| |||| ||||||||| || ||||||||||| ||||||| ||
Sbjct 1854 GGCCACTATTGCCTATCTTTCCTATTGTTTACTGCTGGGTGGATTCTACATCAACCGGGA 1913
Query 1908 TCGAATACCGTTTTATTGGACGTGGTTTCATTACATTTCAATTCTCAAGTATCCGTATGA 1967
||| |||||||| || |||| ||||||||||||||||| ||||||||||||| || ||
Sbjct 1914 TCGGATACCGTTGTACTGGATATGGTTTCATTACATTTCGCTTCTCAAGTATCCCTACGA 1973
Query 1968 GGCTGTCTTAATCAACGAGTTTGATGACCCGTCTCGTTGTTTTGTTAGGGGTGTCCAGGT 2027
||||||| ||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||
Sbjct 1974 GGCTGTCCTAATCAATGAGTTTGATGACCCGTCTCGTTGTTTTGTTAAGGGAGTCCAAGT 2033
Query 2028 -TTTCGACAGTACTCTTCTCGGGGGA-GTGTCTGACTCCGG-GAAGGTTAAGCTCCTTGA 2084
||| || |||| ||| | || ||| || | | | | |||||||||||| || ||
Sbjct 2034 ATTT-GATGGTACGCTTTT-GGCGGAAGTCCCCCA-TATGATGAAGGTTAAGCTTCTCGA 2090
Query 2085 AACTCTCAGTAAATCTCTGAG-AACGAAGATAACGGAGTCCACATGCTTGAGGACGGGGT 2143
|| || |||| ||| | || ||| |||||||| ||||||||||||||||| || |||
Sbjct 2091 TACACTGAGTAGCTCTTT-AGGAACCAAGATAACAGAGTCCACATGCTTGAGAACAGGGC 2149
Query 2144 CTGACTTACTTGCACAACAGGGTATTACGCAATTGAGCAAGTGGGATTGCTTGTGGATTA 2203
||||||||||| || || ||||| || ||||||||||||||||| |||||||||||||
Sbjct 2150 CTGACTTACTTATGCAGCAAGGTATAACTCAATTGAGCAAGTGGGACTGCTTGTGGATTA 2209
Query 2204 CGTTTGCTTCAGGTCTCTTCTTTAGGATCTTATTTTACTTCGCCTTGCTGTTTGGGAGCA 2263
|||| |||| |||||||||||||||||||| |||||||| |||||||||| ||||| |
Sbjct 2210 CGTTAGCTTGGGGTCTCTTCTTTAGGATCTTGTTTTACTTTTCCTTGCTGTTCGGGAGTA 2269
Query 2264 GGAATAAGAGGACGTGA-GGT 2283
|||||||||||||||| |||
Sbjct 2270 AGAATAAGAGGACGTGAAGGT 2290
> Ahg488177 jgi|Araly1|488177|fgenesh2_kg.6__1311__AT5G13580.1
Length=2487
Score = 327 bits (177), Expect = 2e-88
Identities = 483/628 (77%), Gaps = 31/628 (5%)
Strand=Plus/Plus
Query 412 TCCGGAGAGGCTTCTGACGGCGATATCCTCGCCGTTCTCGGTGCAAGTGGAGCAGGAAAA 471
|||||||||||| ||||| || || || || || ||||| |||||||| | ||||||
Sbjct 505 TCCGGAGAGGCTAGAGACGGAGAGATACTAGCTGTGCTCGGAGCAAGTGGCTCCGGAAAA 564
Query 472 TCAACGTTGATCGATGCACTAGCGGGGAGAGTTGCTGAGGGAAGCTTGAGAGG-CTCTGT 530
|| || ||||||||||| |||| || | ||| | |||||||||| ||| | ||
Sbjct 565 TCGACACTGATCGATGCATTAGCTAATCGAATCGCTAAAGGAAGCTTGAAAGGAAAC-GT 623
Query 531 AACTCTAAACGGAGAGAAAGTTTTGCAATCTCG--ATTGTTGAAAGTTATATCGGCGTAT 588
|||||||||| | ||| ||||| | |||| ||| | || ||||| || || || |||
Sbjct 624 AACTCTAAAC-G-GAG-AAGTTCT-CAAT-TCGAAAATGCAGAAAGCCATCTCAGCTTAT 678
Query 589 GTTATGCAAGACGATCTTCTTTTTCCGATGCTCACCGTTAAAGAAACCCTAATGTTCGCT 648
|| ||||||||||||||||||||||||||||| || ||| |||||||| ||||||| ||
Sbjct 679 GTGATGCAAGACGATCTTCTTTTTCCGATGCTTACAGTTGAAGAAACCTTAATGTTTGCC 738
Query 649 TCCGAGTTTCGTCTCCCGAGAAGT-TTGTCTAAGTCGAAGAAGATGGAGC-GTGTTGAAG 706
||||||||||||| ||| |||| || || || || ||||||| | | |||| |||
Sbjct 739 GCCGAGTTTCGTCTTCCGCGAAGCCTT-TCGAAATCAAAGAAGA-GTCTCCGTGTCCAAG 796
Query 707 CCCTAATTGATCAATTAGGG-TTAAGAAACGCGGCGAACACGGTAATCGGAGACGAAGGA 765
| | |||||||||||||| ||| ||||||| || || || || |||||||| |||||
Sbjct 797 CTTTGATTGATCAATTAGGACTTA-GAAACGCAGCAAATACCGTGATCGGAGATGAAGGC 855
Query 766 CACCGTGGAGTTTCTGGAGGAGAGAGACGGCGCGTTTCAATCGGAATCGATATTATACAC 825
||||||||| | |||||||||||||| ||||| |||||||| ||||| ||||| || ||
Sbjct 856 CACCGTGGAATCTCTGGAGGAGAGAGGCGGCGAGTTTCAATTGGAATTGATATCATCCAT 915
Query 826 GATCCTAT-C-GTCTTGTTCCTCGACGAACCAACGTCGGGGCTGGATTCTACAAACGCGT 883
||||| || | | ||| |||||||| |||||||| ||||| |||| ||||||| || |
Sbjct 916 GATCCGATTCTG-CTT-TTCCTCGATGAACCAACCTCGGGTTTGGACTCTACAAGTGC-T 972
Query 884 TTATG-GTGGTGCAAG-TT-TTGAAACGAATTGCTCAAAGTGGCAGTATCGTAATTATGT 940
|| | || | ||| || || |||||||| ||||| ||||| ||||| || || |||
Sbjct 973 CTAAGTGTCATT-AAGGTTCTT-AAACGAATCGCTCAGAGTGGAAGTATGGTGATCATGA 1030
Query 941 CGATCCATCAACCTAGTG-CTCGAAT-CGTGGAGTTGCTTGATCGGCTTATCATTCTA-T 997
| | |||||||||||| | || | | | || ||||||||||| ||| || |||| |
Sbjct 1031 CTCTTCATCAACCTAGTTAC-CGTCTTCTTCGA-TTGCTTGATCGTCTTCTC-TTCTTGT 1087
Query 998 CTCGTGGCAAAAGTGTGTTCAATGGATC 1025
| |||||| ||| ||| |||| |||||
Sbjct 1088 CCCGTGGCCAAACTGTCTTCAGCGGATC 1115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94730439315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5