BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55240.1 Length=681 Score E Sequences producing significant alignments: (Bits) Value Ahg485945 jgi|Araly1|485945|fgenesh2_kg.5__1937__AT3G55240.1 959 0.0 > Ahg485945 jgi|Araly1|485945|fgenesh2_kg.5__1937__AT3G55240.1 Length=656 Score = 959 bits (519), Expect = 0.0 Identities = 632/681 (93%), Gaps = 30/681 (4%) Strand=Plus/Plus Query 1 TTTTAGAAAGAAGACTCTCTTTTAAGTTTGGGTGTTAATTCTAGGGTTTCCATTAACAAT 60 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 TTTTAGAAAGAAGACTCTCTTCTAAGTTTGGGTGTTAATTCTAGGGTTTCCATTAACAAT 60 Query 61 GGCAGATTCTTCTTCTGCTTCTTACATTCACATGGTGCAGCACATGATAGAGAAATGTTT 120 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GGCTGACTCTTCTTCTGCTTCTTACATTCACATGGTGCAGCACATGATAGAGAAATGTTT 120 Query 121 GATCTTCCATATGAGCAAAGAAGAGTGTGTGGAAGCTCTCTCTAAGCATGCAAACATCAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GATCTTCCATATGAGCAAAGAAGAGTGTGTGGAAGCTCTCTCTAAGCATGCAAACATCAC 180 Query 181 TCCTGTCATCACCTCTACTGTGTGGAAGGAGCTGGAGAAAGAGAACAAGGAATTCTTCAA 240 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 181 TCCTGTCATCACCTCTACTGTATGGAAGGAGCTGGAGAAAGAGAACAAGGAATTCTTCAA 240 Query 241 GGCGTATGAGGAGAGGCAAAGCAAACAAGAGCAAATGTCGGAGGAAGAGACAAACCAGAT 300 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GGCATATGAGGAGAGGCAAAGCAAACAAGAGCAAATGTCGGAGGAAGAGACAAACCAGAT 300 Query 301 GATCCAGAAGATTATCTCGGATTCATCTAAAGAATCCGACGACTGATCGCGATGTTCGAT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 301 GATCCAGAAGATTATCTCGGATTCATCTAAAGAATCCGACGACTGATCGCGATGTTCG-T 359 Query 361 CGTTAGAT-TTCGAAAACCTTATAGTTTATATATATGAATCTCATGAAAACGATTTATCC 419 | |||| || ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 360 --T-AGATCTTT-AAAACCTTATAGTTTATATATATAAATCTCATGAAAACGATTTATCC 415 Query 420 CTGACGCATGCATGTTTATAAGTAAATCGTTTTTT--CATCT-TAG-CATCGGTCCAACA 475 |||||||||||||||||||| |||||||||||||| ||||| | | ||||||||||||| Sbjct 416 CTGACGCATGCATGTTTATATGTAAATCGTTTTTTTTCATCTCTTGGCATCGGTCCAACA 475 Query 476 AGCAAGACAGCaaaaaaaGGAGTGATGACACTCTTTTTGGTACGTTATACGTACGTGGTC 535 || ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 476 AGAAAGACAGCAAAAAAAGG-GTGATGACACTCCTTTTGGTACGTTATACGTACGTGGTC 534 Query 536 CACATAATATTGCCTCTGTTTAATTATATATAATGAAACGGACGCTAGCTCATACATGGA 595 ||||||||||||||| ||| |||||| ||||| | || | | | | | | | Sbjct 535 CACATAATATTGCCTTTGTATAATTA-ATATA-T-AA--------T-G---A-A-A-G-A 575 Query 596 TCGATGGTGTGGTGTTTTAATTGAATGTATCGTGTGTATATATTTTCAAATAAACTATTT 655 |||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 576 TCGATGGTGTGGCGTTTTAATTGAATGTATCATGTGTATATATCTTCAAATAAACTATTT 635 Query 656 ATTTCGGGTTTTGGTCACCTT 676 || || ||| ||||||||||| Sbjct 636 ATCTCTGGTCTTGGTCACCTT 656 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25008633552 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5