BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55330.1
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485956 jgi|Araly1|485956|fgenesh2_kg.5__1948__AT3G55330.1 1393 0.0
> Ahg485956 jgi|Araly1|485956|fgenesh2_kg.5__1948__AT3G55330.1
Length=921
Score = 1393 bits (754), Expect = 0.0
Identities = 849/892 (95%), Gaps = 18/892 (2%)
Strand=Plus/Plus
Query 1 ACTGAGAAAGAAGTGAATCCATAAGAGAAGACAACAAAAGATCTATCTCTATACCACATA 60
||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1 ACTGAGAAAGAAGCGAATCCATAAGAGACGACAACAAAAGATC--TCTCTATACCACATA 58
Query 61 TTACACTTTTTCTCCAATGGCTTCTCTGAAGCTTTCACCTTCTTCTCCAATCTCCATTTC 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 59 TTACAC-TTTTCTCCAATGGCTTCTCTGAAGCTTTCACCTTCTTCTCCAATCTCCATCTC 117
Query 121 TAAGGTTGGTGTGATTCCTTCCTCTAAGAAAGGACTTTCATTTCTTGTAAAAGCAGAGCA 180
||||||| | ||| |||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 118 TAAGGTT-G-GTG-TTCCTTGCTCTAAGAAAGGACTTTCATTTCTTGTAAAAGCTGAGCA 174
Query 181 CCATTCCTCGTCTTCTTCTTCTCATCTTCAAGATAAATGTCAGAGACGTCTGATTGTAAC 240
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 CCATTCTTCGTCTTCCTCTTCTCATCTTCAAGATAAATGTCAGAGACGTCTGATTGTAAC 234
Query 241 ATTTGGTGTTGTTGCTCCTTGGATCTCATTGCTTAGTAGAGCTCCATTATCATTTGCTGC 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 235 ATTTGGTGTTGTTGCTCCTTGGATCTCATTGCTTAGTAGAGCTCCACTATCATTTGCTGC 294
Query 301 AGAAAGCAAAAAAGGATTCCTTGCTGTCTCTGACAATAAAGATGCTTATGCGTTTCTCTA 360
|||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct 295 AGAAAGCAAAAAAGGATTTCTTGCTGTCTCTGACAATAAAGATGCATATTCGTTTCTCTA 354
Query 361 TCCATTTGGTTGGCAGGAAGTTGTGATTGAAGGTCAAGATAAGGTATACAAAGATGTGAT 420
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 355 TCCATTTGGTTGGCAGGAAGTTGTGATTGAGGGTCAAGACAAGGTATACAAAGATGTGAT 414
Query 421 TGAGCCTTTAGAAAGTGTTAGTGTGAATTTGGTCCCAACTAGCAAACAGACTATTAAAGA 480
||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 415 TGAGCCTTTAGAAAGCGTTAGTGTCAATTTGATCCCAACTAGCAAACAGACTATTAAAGA 474
Query 481 ATTTGGCCCTCCCAAGCAGATAGCTGAAACACTGATAAAGAAAGTTTTGGCACCTCCAAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 ATTTGGCCCTCCCAAGCAGATAGCTGAAACACTGATAAAGAAAGTTTTGGCACCTCCAAA 534
Query 541 TCAGAAAACAACCCTTATTGATGCATCAGAGCATGATGTCGATGGGAAGACTTATTATCA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 535 TCAGAAAACAACCCTTATTGATGCATCAGAGCATGATGTCGATGGGAAGACTTATTACCA 594
Query 601 GTTTGAGTTCACTGTTCAAGCTAGAAACTACACTCGCCATGCTCTGGGTACCATCACGGT 660
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 595 GTTTGAGTTCACTGTTCAGGCTAGAAACTACACCCGCCATGCTCTGGGTACAATCACGGT 654
Query 661 TTTCAACGGAAACTTCTACACACTGACGACGGGAGCGAATGAAAGGAGGTGGGAGAAGAT 720
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 655 TTTCAACGGAAAATTCTACACACTGACGACGGGAGCGAATGAGAGGAGGTGGGAGAAGAT 714
Query 721 GAAAGATAGGCTTCACACTGTGGTAGATTCCTTCAAGATCACTGTTTGAAAATACTGTAA 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 715 GAAAGATAGGCTTCACACTGTGGTAGATTCCTTCAAGATCACTGTTTGAAAATA----A- 769
Query 781 TCAAGtttgctttggttgtctcttgttttgc------ccattt-cttgtatttttgtcca 833
||||||||| ||||||| |||||||||||| |||||| ||||||||||||||||
Sbjct 770 TCAAGTTTGGTTTGGTTATCTCTTGTTTTGAAAAAGGCCATTTTCTTGTATTTTTGTCCA 829
Query 834 ttcttcttctctctttCCCTTAACAATATTCTTTTCCTGTAAGAGAGATTCA 885
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TTCTTCTTCTCTCTTTCCCTTAACAATATTCTTTTCCTGTAAGAGAGATTCA 881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36216771150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5