BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55430.1 Length=1768 Score E Sequences producing significant alignments: (Bits) Value Ahg485970 jgi|Araly1|485970|fgenesh2_kg.5__1962__AT3G55430.1 2501 0.0 Ahg912297 jgi|Araly1|912297|Al_scaffold_0001_2551 505 5e-142 > Ahg485970 jgi|Araly1|485970|fgenesh2_kg.5__1962__AT3G55430.1 Length=1729 Score = 2501 bits (1354), Expect = 0.0 Identities = 1617/1740 (93%), Gaps = 34/1740 (2%) Strand=Plus/Plus Query 41 TATACACACGTATACG-CTATACAAAACGGTCATATCTATTAATTTTTATTATAAATACT 99 |||||||||||||||| ||| |||||||||||||||||||| | |||| | ||| | || Sbjct 6 TATACACACGTATACGCCTAGACAAAACGGTCATATCTATT--TATTTA-T-TAATTTCT 61 Query 100 TTCTCGATAAGAATaaaaaaaTCTATTCGTCGTAATAATAAAAACACAACTCAAACGATT 159 | | || | ||| | || | | |||| ||||||||||| | |||||||||||| Sbjct 62 AT-T--AT-A-AAT-AGTTTCTCGA-T-ATCGTCATAATAAAAACTCTACTCAAACGATT 113 Query 160 CACGGGTTTCACTTGGAATCGTTTGGTTTTCTCATTTCCG-AA-AT-ATAAAAAGATGGC 216 ||||||||||||||||||||||||| ||||||| |||||| || || ||||||| ||||| Sbjct 114 CACGGGTTTCACTTGGAATCGTTTGATTTTCTCGTTTCCGAAATATAATAAAAAAATGGC 173 Query 217 CAAAGCGCCACCGTCAATCTCTCTTCTCCTCCTCCTCTGCGCCGCCGTATTCCTCACCAT 276 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 174 CAAAGCGCCACCGTCAATCTCTCTTCTCCTCCTCCTCTCCGCCGCCGTATTCCTCACCAT 233 Query 277 CCCCGCCGTGATCTCCGCCATCGGTGTTAACTACGGAACTCTCGGAAACCTCCCACCACC 336 ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| Sbjct 234 CCCCGCCGTGATCTCCGCCATCGGTGTTAACTATGGAACTCTCGGGAACCTTCCACCACC 293 Query 337 GACTCAGGTGGCTAACTTT-ATCAAGACACAAACTTCGATTGATAGCGTCAAGATCTTCG 395 |||||| ||||| || ||| |||||||| ||||||||||| ||||||||||||||||||| Sbjct 294 GACTCAAGTGGC-AAATTTCATCAAGACTCAAACTTCGATCGATAGCGTCAAGATCTTCG 352 Query 396 ATGTGAATCCCGATATCCTACGTGCCTTCGCTGGAACTGGTATCTCCGTCGTTGTCACCG 455 ||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||| Sbjct 353 ATGTGAATCCCGATATCCTCCGTGCTTTCGCTGGAACTGGTATCTCCGTCGTCGTTACCG 412 Query 456 TTCCTAACGGTGATATTCCGGCGTTGGCTAACGGAAGACAAGCTCGTCGGTGGGTTTCGG 515 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 413 TTCCTAACGGCGATATTCCGGCGTTAGCTAACGGAAGACAAGCTCGTCGGTGGGTTTCGG 472 Query 516 TTAACATTTTGCCGTTTCATCCTCAGACGAAGATTAAGTATATCTCAGTCGGAAATGAGA 575 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 473 CTAACATTTTGCCGTTTCATCCTCAGACGAAGATTAAGTATATCTCTGTCGGAAATGAGA 532 Query 576 TTCTGCTCACCGGAGATAATAACATGATCAATAATCTCTTACCGGCGATGAGGAATCTTA 635 || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 533 TTTTGCTCACCGGAGATAATAATATGATCAATAATCTCTTACCGGCGATGAGGAATCTTA 592 Query 636 ACAACGCTTTGGTTCGTGCTGGTGTCAGAGATGTTAAGGTTACAACCGCACACTCACTTA 695 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 593 ACAATGCTTTGGTTCGTGCTGGTGTCAGAGATGTTAAGGTCACAACCGCACACTCACTTA 652 Query 696 ACATCATAGCCTATGACCTGACCGGTGCACCAAGCAGCGGTAGATTCAGGCCGGGTTGGG 755 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 653 ACATCATAGCCTATGACCTGACCGGTGCACCTAGCAGCGGTAGATTCAGGCCGGGTTGGG 712 Query 756 ACAAAGGCATATTGGCTCCAATCCTAGCTTACCATCGCCGAACCAAGTCACCTTTCATGG 815 |||| ||||||||||||||||||||||||||||||||| | |||||||| |||||||||| Sbjct 713 ACAAGGGCATATTGGCTCCAATCCTAGCTTACCATCGCAGCACCAAGTCTCCTTTCATGG 772 Query 816 TTAACCCGTACCCTTACTTTGGTTTTGACCCCAAAAACGTCAACTTCGCAATTTTCCGAA 875 ||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| | Sbjct 773 TTAACCCGTACCCTTACTTTGGTTTTGACCCTAAAAACGTCAATTTCGCCATTTTCCGTA 832 Query 876 CACCGTACAAGGCAGTCCGTGACCCGTTCACCCGCCACGTCTACACCAACATGTTTGATG 935 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 833 CACCGTACAAGGCAGTCCGTGACCCGTTCACCCGCCATGTCTACACCAACATGTTTGATG 892 Query 936 CACTCATGGACTCGACATACTCAGCCATGAAAGCTCTTGGATACGGTGATGTTAACATTG 995 |||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 893 CACTCATGGACTCGACTTATTCTGCCATGAAAGCTCTTGGATACGGTGATGTTAACATTG 952 Query 996 TCGTTGGCGAGACTGGCTGGCCATCTGCTTGTGACGCACCTTGGTGCTCGCCTGCGAATG 1055 ||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| || |||| Sbjct 953 TCGTTGGTGAGACGGGCTGGCCTTCTGCTTGTGATGCACCTTGGTGCTCGCCGGCTAATG 1012 Query 1056 CTGCTTGGTTCAACCTCAACATTATCAAACGTGCACAAGGCCAAGGGACACCTCTCATGC 1115 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1013 CTGCTTGGTTCAACCTCAACATTATCAAACGTGCACAAGGCCAAGGGACACCTCTCATGC 1072 Query 1116 CTAACAGACGGTTCGAGACATACATTTTCGGTCTCTTCAACGAAGAAGGCAAACCCGGTC 1175 |||| ||| |||| ||||| |||||||||||||||||||| ||||||||||| ||||||| Sbjct 1073 CTAAAAGAAGGTTTGAGACTTACATTTTCGGTCTCTTCAATGAAGAAGGCAAGCCCGGTC 1132 Query 1176 CGACCGCAGAGCGTAACTGGGGACTTTTCCGAGCAGATTTCTCCCCGGTTTACGATGTTG 1235 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1133 CGACCGCAGAGCGTAATTGGGGACTTTTCCGAGCAGATTTCTCCCCGGTTTACGATGTTG 1192 Query 1236 GTCTTCTCCGAAACGGACAAGGCGGTGGAGGCCGCCCAGCATTGCCCGCACCTAGTACTG 1295 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1193 GTCTTCTCCGAAACGGACAAGGCGGTGGAGGCCGTCCAGCATTGCCCGCACCTAGTACTG 1252 Query 1296 CCGGCGGTAAATGGTGTGTAGCGAGGTCCGG-GGCGACGAATACTCAGCTGCAAGACAGT 1354 ||||||||||||||||||| || || || || ||| |||||| | ||||||||||||| Sbjct 1253 CCGGCGGTAAATGGTGTGTGGCCAGATC-GGCGGCAACGAATGCACAGCTGCAAGACAAC 1311 Query 1355 ATTAATTGGGTGTGTGGTCAGGGTGTTGACTGTAAACCGATCCAAGCTGGTGGTTCGTGC 1414 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1312 ATTAATTGGGTGTGTGGTCAGGGGGTTGATTGTAAACCGATCCAAGCTGGTGGTTCGTGC 1371 Query 1415 TTTAACCCGAGCAGTTTGAGGACGCACGCATCTTTTGTTATGAATGCTTATTTCCAGAGC 1474 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1372 TTTAACCCGAGCAGTTTGAGGACGCACGCATCTTTTGTTATGAACGCTTATTTCCAGAGC 1431 Query 1475 CACGGCCGCACTGATGGTGCTTGTAACTTCAGTGGAACTGGTATGATCGTAGGGAACAAC 1534 |||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 1432 CACGGCCGCACTGACGGTGCTTGTAATTTCAGTGGAACTGGTATGGTCGTAGGGAACAAC 1491 Query 1535 CCAAGCAATGGTGCATGTAAGTACTAAGGAGATTGTCTATGT--A-GTAGTA---TTTGT 1588 |||||||||||||| ||||||||||||| ||||||||||||| | |||||| ||||| Sbjct 1492 CCAAGCAATGGTGCGTGTAAGTACTAAG-AGATTGTCTATGTCTATGTAGTAGCATTTGT 1550 Query 1589 CTGGAAAATCCTAACATAATGGTTCTGAGGAACTTTGGATTTGAGAGATCATCAGCTTTG 1648 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1551 CTGGAAAATCCTAACATAATGGTTCTGAGGAACTTTGGATTTGAGAGATCATCAGATTTG 1610 Query 1649 TGtttaatttcggattatcctaattttaagatttttttgttaattattttttcgctgatt 1708 |||||||||||||||||| ||||||||||| |||||| ||||||| ||||| || | ||| Sbjct 1611 TGTTTAATTTCGGATTATTCTAATTTTAAGGTTTTTT-GTTAATTCTTTTTCCGTTAATT 1669 Query 1709 ccttttatttaAA-TAAA----GTGGAACTTC-CATAAAATTTGCTTCAGCGTTACGCTT 1762 ||||||||||||| |||| |||||||||| |||||| |||||||||||| ||||||| Sbjct 1670 CCTTTTATTTAAACTAAATAAAGTGGAACTTCTCATAAATTTTGCTTCAGCGGTACGCTT 1729 > Ahg912297 jgi|Araly1|912297|Al_scaffold_0001_2551 Length=351 Score = 505 bits (273), Expect = 5e-142 Identities = 316/337 (94%), Gaps = 2/337 (1%) Strand=Plus/Plus Query 323 AACCTCCCACCACCGACTCAGGTGGCTAACTTT-ATCAAGACACAAACTTCGATTGATAG 381 ||||| |||||||||||||| ||||| || ||| |||||||| ||||||||||| ||||| Sbjct 1 AACCTTCCACCACCGACTCAAGTGGC-AAATTTCATCAAGACTCAAACTTCGATCGATAG 59 Query 382 CGTCAAGATCTTCGATGTGAATCCCGATATCCTACGTGCCTTCGCTGGAACTGGTATCTC 441 ||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| Sbjct 60 CGTCAAGATCTTCGATGTGAATCCCGATATCCTCCGTGCTTTTGCTGGAACTGGTATCTC 119 Query 442 CGTCGTTGTCACCGTTCCTAACGGTGATATTCCGGCGTTGGCTAACGGAAGACAAGCTCG 501 |||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 120 CGTCGTCGTTACCGTTCCTAACGGTGATATTCCGGCGTTAGCTAACGGAAGACAAGCTCG 179 Query 502 TCGGTGGGTTTCGGTTAACATTTTGCCGTTTCATCCTCAGACGAAGATTAAGTATATCTC 561 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TCGGTGGGTTTCAGCTAACATTTTGCCGTTTCATCCTCAGACGAAGATTAAGTATATCTC 239 Query 562 AGTCGGAAATGAGATTCTGCTCACCGGAGATAATAACATGATCAATAATCTCTTACCGGC 621 ||||| ||||||||| ||||||||||||||||||||||||| || |||||||||||||| Sbjct 240 TGTCGGGAATGAGATTTTGCTCACCGGAGATAATAACATGATTAACAATCTCTTACCGGC 299 Query 622 GATGAGGAATCTTAACAACGCTTTGGTTCGTGCTGGT 658 |||||||||||||||||| |||||||||||||||||| Sbjct 300 GATGAGGAATCTTAACAATGCTTTGGTTCGTGCTGGT 336 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66353206790 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5