BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55440.1
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938476 jgi|Araly1|938476|scaffold_502667.1 1327 0.0
> Ahg938476 jgi|Araly1|938476|scaffold_502667.1
Length=805
Score = 1327 bits (718), Expect = 0.0
Identities = 771/797 (97%), Gaps = 1/797 (0%)
Strand=Plus/Plus
Query 86 CTGaaaaaaaTTTGAGATAATGGCCAGAAAGTTCTTCGTCGGAGGCAACTGGAAATGTAA 145
||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3 CTG-AAAAAGCTTGAGATAATGGCCAGAAAGTTCTTCGTCGGAGGTAACTGGAAATGTAA 61
Query 146 CGGAACTGCTGAGGAGGTGAAGAAGATTGTGAACACTCTTAATGAAGCTCAGGTTCCTTC 205
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 62 CGGAACTGCTGAGGAGGTGAAGAAGATTGTGAACACTCTTAATGAAGCTCAAGTACCTTC 121
Query 206 ACAGGATGTTGTAGAGGTTGTGGTTAGCCCTCCATATGTTTTTCTTCCCCTGGTTAAGAG 265
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 122 ACAGGATGTTGTAGAGGTTGTGGTTAGCCCTCCATATGTTTTCCTTCCCCTGGTTAAGAG 181
Query 266 CACATTGAGGTCTGACTTTTTTGTTGCGGCACAAAACTGTTGGGTTAAGAAAGGAGGTGC 325
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 182 CACATTGAGGTCTGACTTTTTTGTTGCGGCACAAAACTGTTGGGTTAAGAAGGGAGGTGC 241
Query 326 TTTCACTGGTGAAGTGAGTGCGGAGATGCTTGTGAACTTGGATATTCCATGGGTTATCCT 385
|| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 242 TTACACTGGTGAAGTGAGTGCTGAGATGCTTGTGAACTTGGATATCCCATGGGTTATCCT 301
Query 386 TGGTCACTCTGAAAGGAGGGCAATCCTTAATGAATCAAGCGAGTTCGTCGGAGACAAGGT 445
|||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 302 TGGTCACTCTGAAAGGAGGGCAATCCTTAATGAATCAAACGAGTTTGTTGGAGACAAGGT 361
Query 446 TGCCTATGCACTTGCTCAAGGTTTGAAAGTGATTGCTTGTGTTGGTGAGACTCTTGAGGA 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TGCCTATGCACTTGCTCAAGGTTTGAAAGTGATTGCTTGTGTTGGTGAGACTCTTGAGGA 421
Query 506 GCGGGAAGCTGGATCGACCATGGATGTTGTGGCTGCCCAGACCAAGGCTATTGCCGATCG 565
|||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 422 GCGGGAAGCTGGGTCGACCATGGATGTTGTGGCTGCCCAGACCAAAGCTATCGCTGATCG 481
Query 566 GGTGACAAACTGGTCAAATGTTGTCATAGCCTATGAACCAGTGTGGGCCATTGGAACCGG 625
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 482 GGTGTCAAACTGGTCAAATGTTGTCATAGCCTATGAGCCAGTGTGGGCCATTGGAACCGG 541
Query 626 AAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAGTACACGATGAGCTGAGGAAATGGCTGGC 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 AAAGGTCGCTAGCCCAGCCCAAGCTCAAGAAGTACACGATGAGCTGAGGAAATGGCTGGC 601
Query 686 CAAGAACGTGAGTGCTGATGTCGCTGCTACAACCCGCATCATTTATGGAGGATCCGTCAA 745
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 602 CAAGAACGTGAGTGCTGATGTTGCTGCTACAACCCGCATCATTTATGGAGGATCCGTCAA 661
Query 746 TGGTGGTAACTGCAAGGAGCTAGGTGGACAGGCCGATGTTGATGGTTTCTTGGTCGGTGG 805
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 662 TGGTGGTAACTGCAAGGAGCTAGGTGGTCAGGCCGATGTTGATGGTTTCTTGGTCGGTGG 721
Query 806 TGCTTCTCTAAAGCCTGAGTTTATCGACATCATTAAGGCCGCAGAGGTGAAGAAAAGTGC 865
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 722 TGCTTCTCTAAAGCCTGAGTTTATCGACATCATTAAGGCTGCAGAGGTGAAGAAAAGCGC 781
Query 866 CTAATGAGCTCATTAAG 882
||||||| ||||||||
Sbjct 782 TTAATGAGTTCATTAAG 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50550987942
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5