BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55470.1 Length=828 Score E Sequences producing significant alignments: (Bits) Value Ahg938480 jgi|Araly1|938480|scaffold_502671.1 904 0.0 > Ahg938480 jgi|Araly1|938480|scaffold_502671.1 Length=548 Score = 904 bits (489), Expect = 0.0 Identities = 528/547 (97%), Gaps = 2/547 (0%) Strand=Plus/Plus Query 102 AAAAAATAACTCTACAGAGATGGCTGTTGGAATCCTTGAGGTTAGTCTGATCAGTGGCAA 161 |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 AAAAAAAAACTCTATAGAGATGGCTGTTGGAATCCTTGAGGTTAGTCTGATCAGTGGCAA 62 Query 162 AGGTCTCAAGCGCTCTGATTTTCTTGGTAAGATAGATCCATATGTTGAGATCCAATACAA 221 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 63 AGGTCTTAAGCGCTCTGATTTTCTTGGCAAGATAGATCCATATGTTGAGATCCAATACAA 122 Query 222 AGGGCAAACCCGCAAAAGCAGCGTTGCTAAAGAAGATGGAGGTAGAAATCCGACATGGAA 281 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 AGGCCAAACCCGCAAAAGCAGCGTTGCTAAAGAAGATGGAGGTAGAAATCCGACATGGAA 182 Query 282 TGATAAATTGAAATGGAGAGCAGAGTTTCCTGGCTCCGGCGCCGACTACAAACTCATCGT 341 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 183 TGATAAATTGAAATGGAGAGCAGAGTTTCCTGGCTCCGGCGCGGACTACAAACTCATCGT 242 Query 342 CAAAGTCATGGATCATGATACTTTCTCCTCTGACGATTTCATTGGCGAAGCCACGGTACA 401 |||||||||||||||||||||||||||| | || |||||||| ||||||||||||||||| Sbjct 243 CAAAGTCATGGATCATGATACTTTCTCCACCGATGATTTCATCGGCGAAGCCACGGTACA 302 Query 402 TGTGAAAGAGCTATTGGAAATGGGAGTGGAGAAGGGAACGGCGGAGCTAAGGCCAACCAA 461 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 303 TGTGAAAGAGCTGTTGGAAATGGGAGTGGAGAAGGGAACGGCTGAGCTAAGGCCAACCAA 362 Query 462 GTACAACATTGTTGACTCCGATCTCTCCTTTGTCGGCGAGCTTCTCATTGGAGTTTCTTA 521 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 363 GTACAACATTGTTGACTCCGATCTCTCCTTTGTCGGCGAGCTTCTCATCGGAGTTTCTTA 422 Query 522 CTCTCTTTTGCAAGACAGGGGAATGGATGGAGAACAGTTTGGAGGATGGAAGCATAGCCA 581 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 423 CTCTCTTTTGCAAGACAGGGGAATGGATGGGGAACAGTTTGGAGGATGGAAGCATAGCCG 482 Query 582 AGTTGATTAGTTTGGTTTCTTAAAACTGCTGATTTTATCTTCTTCTTCTA-TCTTTAGTG 640 ||||||||||||| ||||| ||||||||||||||||||||||||||| || ||||||||| Sbjct 483 AGTTGATTAGTTTCGTTTCGTAAAACTGCTGATTTTATCTTCTTCTT-TAATCTTTAGTG 541 Query 641 TCAACAT 647 ||||||| Sbjct 542 TCAACAT 548 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30612702351 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5