BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55560.1
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938493 jgi|Araly1|938493|scaffold_502684.1 1624 0.0
> Ahg938493 jgi|Araly1|938493|scaffold_502684.1
Length=1032
Score = 1624 bits (879), Expect = 0.0
Identities = 977/1024 (95%), Gaps = 7/1024 (1%)
Strand=Plus/Plus
Query 356 AAGaaaaaaaGAATGGCGAATCCTTGGTGGGTAGGGAATGTTGCGATCGGTGGAGTTGAG 415
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 AAGGAAAAATCAATGGCGAATCCTTGGTGGGTAGGGAATGTTGCGATCGGTGGAGTTGAG 75
Query 416 AGTCCAGTGACGTCATCAGCTCCTTCTTTGCACCACAGAAACAGTAACAACAACAACCCA 475
|||||||| ||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 76 AGTCCAGTAACGTCATCAGCTCCTTCTTTGCACCACAGGAACAGT------AACAACCCA 129
Query 476 CCGACTATGACTCGTTCGGATCCAAGATTGGACCATGACTTCACCACCAACAACAGTGGA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 CCGACTATGACTCGTTCGGATCCAAGATTGGACCATGACTTCACCACCAACAACAGTGGA 189
Query 536 AGCCCTAATACCCAGACTCAGAGCCAAGAAGAACAGAACAGCAGAGACGAGCAACCAGCT 595
||||||||||| ||||||| |||||||||||||||||| ||| |||||||||||||||||
Sbjct 190 AGCCCTAATACTCAGACTCTGAGCCAAGAAGAACAGAATAGCCGAGACGAGCAACCAGCT 249
Query 596 GTTGAACCCGGATCCGGATCCGGGTCTACGGGTCGTCGTCCTAGAGGTAGACCTCCTGGT 655
|| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 250 GTCGAACCCGGATCCGGATCCGGGTCTACGGGTCGGCGTCCGAGAGGTAGACCTCCTGGT 309
Query 656 TCCAAGAACAAACCAAAGAGTCCAGTTGTTGTTACCAAAGAAAGCCCTAACTCTCTCCAG 715
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 310 TCCAAGAACAAACCAAAGAGTCCAGTGGTTGTTACCAAAGAAAGCCCTAACTCTCTGCAG 369
Query 716 AGCCATGTTCTTGAGATTGCTACGGGAGCTGACGTGGCGGAAAGCTTAAACGCCTTTGCT 775
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 370 AGCCATGTTCTTGAGATTGCTACGGGTGCTGACGTGGCGGAAAGCTTAAACGCCTTTGCT 429
Query 776 CGTAGACGCGGCCGGGGCGTTTCGGTGCTGAGCGGTAGTGGTTTGGTTACTAATGTTACT 835
|||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 430 CGTAGACGCGGCCGTGGCGTTTCTGTGCTTAGCGGTAGCGGTTTGGTTACTAATGTTACT 489
Query 836 CTGCGTCAGCCTGCTGCATCCGGTGGAGTTGTTAGTTTACGTGGTCAGTTTGAGATCTTG 895
||||||||||||||||| || ||||||||||| || ||||||||||||||||||||||||
Sbjct 490 CTGCGTCAGCCTGCTGCCTCTGGTGGAGTTGTGAGCTTACGTGGTCAGTTTGAGATCTTG 549
Query 896 TCTATGTGTGGGGCTTTTCTTCCTACGTCTGGCTCTCCTGCTGCAGCCGCTGGTTTAACC 955
||||||||||| |||||||||||||| ||||| ||||| |||||||| ||||||||||||
Sbjct 550 TCTATGTGTGGTGCTTTTCTTCCTACTTCTGGTTCTCCGGCTGCAGCTGCTGGTTTAACC 609
Query 956 ATTTACTTAGCTGGAGCTCAAGGTCAAGTTGTGGGAGGTGGAGTTGCTGGCCCGCTTATT 1015
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 610 ATTTACTTAGCTGGAGCTCAAGGTCAAGTTGTGGGAGGTGGAGTTGCGGGGCCGCTTATC 669
Query 1016 GCCTCTGGACCCGTTATTGTGATAGCTGCTACGTTTTGCAATGCCACTTATGAGAGGTTA 1075
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 GCCTCTGGACCGGTTATTGTGATAGCTGCTACGTTTTGCAATGCCACTTATGAGAGGTTA 729
Query 1076 CCGATTGAGGAAGAACAACAGCAAGAGCAGCCGCTTCAACTAGAAGATGGGAAGAAGCAG 1135
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 730 CCGGTTGAGGAAGAACAACAACAAGAGCAGCCGCTTCAACTAGAAGATGGGAAGAAGCAG 789
Query 1136 AAAGAAGAGAATGATGATAACGAGAGTGGGAATAACGGAAACGAAGGATCGATGCAGCCG 1195
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 790 AAAGAGGAGAATGATGATAACGAGAGTGGGAATAATGGAAACGAAGGATCGATGCAGCCA 849
Query 1196 CCGATGTATAATATGCCTCCTAATTTTATCCCAAATGGTCATCAAATGGCTCAACACGAC 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 CCGATGTATAATATGCCTCCTAATTTTATCCCAAATGGTCATCAAATGGCTCAACACGAC 909
Query 1256 GTGTATTGGGGTGGTCCTCCGCCTCGTGCTCCTCCTTCGTATTGATTAGTTAGATAGGCG 1315
||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 910 GTGTATTGGGGTGCTCCTCCGCCTCGTGCTCCTCCTTCATATTGAT-AGTTAGATAGGCG 968
Query 1316 GTGGTTGGTGCGTTCTTTTTACTGGAATGATTATATTTTCCATTAGGATGGTTAGGCTTT 1375
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 969 GTGGTTGGTGCGTTCTTTTTGCTGGAATGATTATATTTTCCATTAGGATGGTTAGGCTTT 1028
Query 1376 TGTT 1379
||||
Sbjct 1029 TGTT 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59496962690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5