BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55580.1
Length=1723
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485985 jgi|Araly1|485985|fgenesh2_kg.5__1977__AT3G55580.1 2148 0.0
> Ahg485985 jgi|Araly1|485985|fgenesh2_kg.5__1977__AT3G55580.1
Length=1449
Score = 2148 bits (1163), Expect = 0.0
Identities = 1361/1455 (94%), Gaps = 20/1455 (1%)
Strand=Plus/Plus
Query 67 ATGAATGGCGAGGGAAAATTGGAGACTGGTGGAACTAGCGCCGCCGCCACACCAAAAGAG 126
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGAATGGCGAGGGAAATTTGGAGACTGGTGGAACTAGCGCCGCCG---CACCAAAAGA- 56
Query 127 GAGAAGGAAGAAGAAGAAGTAGTTTCCCAGAGAGTAGTGTACATGTGGGGTTACTTACCC 186
| | | | | || ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 57 G-G-A-G--G-AG--GAAGTTGTTGGTCAGAGAGTAGTGTACATGTGGGGTTACTTACCG 108
Query 187 GGAGCTTCACCGCAACGGTCTCCTCTGATGTCACCAGTCGAAGTAAAGATTCCTCCGGCA 246
|||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 109 GGAGCTTCGCCGCAACGGTCTCCTCTGATGTCACCGGTCGAAGTGAAGATTCCTCCGGCT 168
Query 247 GTCGAAAGTTCATGGAAAGATGTCTCTGGTGGTGGATGCGGTTTCGCAATGGCTACTGCA 306
|| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 169 GTTGAAAGTTCCTGGAAAGATGTCTATGGTGGTGGATGCGGTTTCGCAATGGCTACTGCA 228
Query 307 GAGTCAGGGAAGCTAATTACATGGGGTTCTACAGATGATCTAGGTCAAAGCTACGTCACA 366
||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 229 GAGTCGGGGAAGCTAATTACATGGGGTTCGACAGATGATCTAGGTCAAAGCTATGTCACA 288
Query 367 TCTGGGAAACACGGGGAGACTCCAGAGCCATTTCCTCTTCCTCCAGAGGTTTGTGTACAG 426
|| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TCCGGCAAGCACGGTGAGACTCCAGAGCCATTTCCTCTTCCTCCAGAGGTTTGTGTACAG 348
Query 427 AAAGCTGAAGCTGGATGGGCTCATTGTGTGGCAGTAACAGAGAATCAACAAGTTTATACA 486
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 349 AAAGCTGAGGCTGGATGGGCTCATTGTGTGGCAGTAACAGAGAATCAAGAAGTTTATACA 408
Query 487 TGGGGATGGAGGGAATGTATACCCACTGGGAGAGTCTTCGGACAAGTAGATGGAGATTCT 546
|||||||||||||||||||||||||| |||||||| || ||||||| ||| ||||||||
Sbjct 409 TGGGGATGGAGGGAATGTATACCCACAGGGAGAGTGTTTGGACAAGCAGAGGGAGATTCG 468
Query 547 TGTGAAAGAAACATATCGTTCTCGACAGAGCAAGTGAGTTCTAGTTCTCAAGGGAAAAAA 606
|||||||||||||| || ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 469 TGTGAAAGAAACATTTCCTTCTCGACAGAGCAAGTGAGTCCCAGTTCTCAAGGGAAAAAA 528
Query 607 TCTAGTGGTGGAACGTCTTCTCAAGTTGAAGGTAGAGGTGGAGGGGAGCCAACAAAGAAA 666
|||| ||||||||||||||||||||||||| ||||||| || | ||||||||||||
Sbjct 529 TCTAACGGTGGAACGTCTTCTCAAGTTGAAGCTAGAGGT-GA----A-CCAACAAAGAAA 582
Query 667 AGGAGGATTTCACCGTCAAAGCAAGCTGCTGAAAATTCATCACAGTCTGACAACATTGAC 726
||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 583 AGGCGGGTTTCACCGTCAAAGCAAGCTGCTGAAAATGCATCACAGTCTGACAACATTGAC 642
Query 727 CTCTCGGCATTGCCTTGCCTTGTATCGTTGGCCCCAGGAGTTAGGATTGTTAGTGTTGCT 786
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 643 CTCTCGGCATTGCCTTGCCTTGTATCGTTGGCGCCTGGAGTTAGGATTGTCAGTGTTGCT 702
Query 787 GCTGGTGGTCGTCATACTCTAGCATTATCAGATATTGGACAGGTGTGGGGTTGGGGTTAT 846
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 GCTGGTGGACGTCATACTCTAGCATTATCAGATATTGGACAGGTGTGGGGTTGGGGTTAT 762
Query 847 GGAGGAGAAGGACAGCTTGGATTGGGCTCTCGTGTACGTCTAGTCTCCTCTCCTCATCCT 906
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 763 GGAGGAGAAGGACAGCTTGGATTGGGCTCCCGTGTGCGCCTAGTCTCCTCTCCTCATCCT 822
Query 907 ATTCCATGCATTGAGCCTTCTTCTTATGGAAAAGCCACCAGTTCTGGTGTAAACATGAGT 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 ATTCCATGCATTGAGCCTTCTTCTTATGGAAAAGCCACCAGTTCTGGTGTAAACATGAGT 882
Query 967 TCAGTAGTGCAATGCGGCCGAGTTCTTGGAAGTTATGTaaaaaaaaTTGCATGTGGAGGG 1026
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 TCAGAAGTGCAATGCGCCCGAGTTCTTGGAAGTTATGTAAAAAAAATTGCATGTGGAGGG 942
Query 1027 CGACACAGTGCTGTGATTACAGATACTGGAGCGCTCCTTACATTTGGTTGGGGGCTTTAT 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 CGACACAGTGCTGTGATTACAGATACTGGAGCGCTCCTTACATTTGGTTGGGGGCTTTAT 1002
Query 1087 GGACAGTGTGGCCAAGGAAGTACAGATGATGAACTAAGTCCTACATGTGTGTCGTCTTTG 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 GGACAGTGTGGCCAAGGAAGTACAGATGATGAACTAAGTCCTACATGTGTGTCGTCTTTG 1062
Query 1147 TTGGGAATCCGAATAGAAGAAGTGGCTGCAGGTCTATGGCACACGACCTGCGCTTCATCG 1206
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
Sbjct 1063 TTGGGAATCCGAATAGAAGAAGTGGCTGCAGGTCTATGGCACACGATCTGTGCTTCAGCT 1122
Query 1207 GATGGTGATGTTTATGCGTTTGGTGGAAACCAATTTGGCCAGTTAGGTACTGGTTGTGAT 1266
||||| ||||| ||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1123 GATGGGGATGTATATTCGTTTGGTGGAAACCAATTTGGACAGTTAGGTACTGGTTGTGAT 1182
Query 1267 CAAGCTGAGACTCTTCCAAAACTATTGGAGGCTCCAAATTTGGAAAACGTAAACGTCAAA 1326
|||||||||||||||||||||||||||||||||||||| |||||||| || || || |||
Sbjct 1183 CAAGCTGAGACTCTTCCAAAACTATTGGAGGCTCCAAACTTGGAAAATGTCAATGTAAAA 1242
Query 1327 ACCATCTCCTGCGGGGCTCGCCACACAGCTGTAATCACAGATGAAGGGAGAGTATTCTGC 1386
| |||||||||||| ||||| ||||| ||||||||| |||||||||||| ||||||||||
Sbjct 1243 ATCATCTCCTGCGGTGCTCGTCACACCGCTGTAATCGCAGATGAAGGGAAAGTATTCTGC 1302
Query 1387 TGGGGATGGAACAAATACGGACAGTTGGGTATAGGAGATGTGATTGACAGGAATGCACC- 1445
|||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| ||
Sbjct 1303 TGGGGATGGAACAAATACGGGCAGTTGGGTTTAGGAGATGTGATAGACAGGAATGCTCCA 1362
Query 1446 TGCAGAGGTTAGAATCAAAGATTGCTTCCCCAAAAACATTGCATGCGGTTGGTGGCATAC 1505
| |||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1363 T-CAGAAGTCAGAATCAAAGATTGCGTCCCCAAAAACATTGCATGCGGTTGGTGGCATAC 1421
Query 1506 TCTGCTTCTAGGCCA 1520
||| |||||||||||
Sbjct 1422 TCTACTTCTAGGCCA 1436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64639145765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5