BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55630.3
Length=1692
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485991 jgi|Araly1|485991|fgenesh2_kg.5__1983__AT3G55630.3 2671 0.0
> Ahg485991 jgi|Araly1|485991|fgenesh2_kg.5__1983__AT3G55630.3
Length=1681
Score = 2671 bits (1446), Expect = 0.0
Identities = 1612/1692 (95%), Gaps = 12/1692 (1%)
Strand=Plus/Plus
Query 1 AGATTAAACTGAAAGTTAGGACCTTTCATTTCCAATCTCTAAACCCATTTCTCTACGATT 60
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 AGATTAAACTGAAAGTTAGGACCTTTCATTTCCAATCCCTAAACCCATTTCTCTACGATA 60
Query 61 AGAGAAGCTGACATCAAAATTGAAACTTGGGAAATTTTTGGATTTGTTCTTCTTCTATGG 120
|||||| ||||||||||||| ||| | |||||| |||||||||||||||||||||||||
Sbjct 61 AGAGAAACTGACATCAAAATCCAAAGTCGGGAAA-TTTTGGATTTGTTCTTCTTCTATGG 119
Query 121 CAACTGAAGACGATGGTGAATTGTCAGCTCGTTACCAGAACACGTTGGATGCATTGTCGT 180
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAACTGAAGACGAAGGTGATTTGTCAGCTCGTTACCAGAACACGTTGGATGCATTGTCGT 179
Query 181 CTTTGATCACAAAACGTGGCCGTTTAGCTAGTAACAACCAATCTCACCGATTCCGTTTGC 240
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 CTTTGATCACAAAACGCGGCCGTTTTGCTAGTAACAACCAATCTCACCGATTCCGTTTGC 239
Query 241 TCTTTCATTATCTCAAGGTTCTTGAGCTTGAAGATGCAGTTTCACAAATGAAAATCATTC 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 240 TCTTTCATTATCTCAAGGTTCTTGAGCTTGAAGATGCAGTCTCACAAATGAAAATTATTC 299
Query 301 ATGTGGCCGGAACTAAAGGAAAGGGATCAACATGTACATTTGCGGAGTCTATTCTTCGTT 360
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 300 ATGTGGCTGGAACTAAAGGAAAGGGATCAACATGTACATTTGCGGAATCTATTCTTCGTT 359
Query 361 GTTACGGTCTTCGAACTGGTCTCTTCACATCTCCTCACTTAATCGATGTCCGAGAGAGAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTTACGGTCTTCGAACTGGTCTCTTCACATCTCCTCACTTAATCGATGTCCGAGAGAGAT 419
Query 421 TCCGTCTTAACGGCATTGAGATAAGCCAGGAGAAATTTGTGAACTACTTTTGGTGTTGCT 480
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 420 TCCGTCTTAATGGCATTGAGATAAGCCAGGAGAAATTTGTGGACTACTTTTGGTGTTGCT 479
Query 481 TTCATAAGCTCAAGGAGAAAACCAGCAATGAGGTTCCAATGCCTACTTATTTCTGCTTCC 540
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 480 TTCATAAGCTCAAGGAGAAAACCAGCAATGAAGTTCCAATGCCTACTTACTTCTGCTTCC 539
Query 541 TTGCTTTATTAGCTTTCAAGATTTTCACAACAGAACAGGTTGATGTTGTTATACTAGAAG 600
|||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 540 TTGCATTGTTAGCTTTCAAGATTTTCGCAACAGAACAGGTTGATGTTGTTATACTAGAAG 599
Query 601 TTGGCTTAGGTGGGAGATTCGATGCGACTAATGTGATTCAGAAACCTGTCGTCTGTGGTA 660
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGGCTTAGGTGGGAGGTTTGATGCGACTAATGTGATTCAGAAACCTGTCGTCTGTGGTA 659
Query 661 TTTCTTCTCTAGGGTATGACCATATGGAGATTCTTGGATACACACTTGCTGAAATTGCTG 720
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 660 TTTCTTCTCTAGGGTATGACCATATGGAGATTCTTGGATACACGCTTGCTGAAATCGCTG 719
Query 721 CAGAGAAAGCCGGTATCTTCAAGAGTGGAGTTCCTGCTTTTACAGTGGCTCAACCTGATG 780
||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||
Sbjct 720 CAGAGAAAGCCGGTATCTTCAAGAGTGGAGTCCCGGCTTTTACAGTGCCTCAACCTGATG 779
Query 781 AAGCAATGCGTGTACTCAATGAAAAAGCTTCAAAATTGGAGGTGAATCTTCAGGTGGTGG 840
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AAGCGATGCGTGTACTCAACGAAAAAGCTTCAAAATTGGAGGTGAATCTTCAGGTGGTGG 839
Query 841 AACCGTTGGACTCAAGCCAGAGACTCGGGCTTCAAGGCGAACATCAATATCTAAACGCTG 900
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 840 AACCATTGGACTCAAGCCAGAGACTCGGTCTTCAAGGCGAACATCAATATCTAAACGCTG 899
Query 901 GTCTTGCTGTTGCGTTGTGCTCTACATTTCTTAAAGAGATTGGTATTGAGGACAAGAATG 960
||||||||||||||||||| | ||||||||| |||||||||||||||||||| ||||||
Sbjct 900 GTCTTGCTGTTGCGTTGTGTTTTACATTTCTAAAAGAGATTGGTATTGAGGAGAAGAATT 959
Query 961 GTTTGGATCAGACAAACGGTTTACCCGAAAAATTCATCTCTGGATTGTCAAATGCTTATT 1020
|| || |||| |||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 960 GTCTGAATCAAACAAACGGTTTACCCGCAAAATTCATCTCTGGATTGTCGAATGCTTATT 1019
Query 1021 TGATGGGACGAGCTATGATAGTGCCTGATTCAGAACTCCCTGAAGAGATTGTGTATTACC 1080
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGATGGGACGAGCTATGGTAGTGCCTGATTCAGAACTCCCTGAAGAGATTGTGTATTACC 1079
Query 1081 TTGATGGAGCTCATAGTCCTGAAAGCATGGAAGCTTGCGCTATATGGTTTTCAAAACAGA 1140
||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||
Sbjct 1080 TTGATGGAGCTCATAGTCCCGAGAGCATGGTAGCTTGCGCTATATGGTTTTCAAAACAGA 1139
Query 1141 TCAAACAAAACCAAGAAAGAAACCAGAAAAGATCAGAGCAGATACTCTTGTTCAATTGTA 1200
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TCAAACAAAACCAAGAAAGTAACCAGAAAAGATCAGAGCAGATACTCTTGTTCAATTGTA 1199
Query 1201 TGTCTGTTCGTGACCCGAGTTTGCTTCTTCCGCGATTAAGGAGTAAATGCATTGATCAAG 1260
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1200 TGTCAGTTCGTGACCCGAGTTTGCTTCTTCCGCGATTAAGGAGCAAATGCATTGATCAAG 1259
Query 1261 GAGTTGATTTCAAGAGAGCCGTTTTTGTGCCAAACGTATCAGTGTACAACCAAGTGGGAT 1320
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1260 GAGTTGATTTCAAGAGAGCCATTTTTGTGCCAAACGTATCAGTGTACAACCAAGTGGGTT 1319
Query 1321 CTTCGA-CAAACGTTGGCACACGTGTCGAGTCGATGTCGTGGCAGTTCGGTCTTCAGAGG 1379
|||| | || | |||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1320 CTTC-ATCAGAGGTTGCCACACGTGTCGAGTCGATGTCGTGGCAGTTGGGTCTTCAGAGG 1378
Query 1380 ATTTGGGAGAGTTTAGCTCGAGGTGAAGCAAAATCTAATTCAAAAAGTGATTCTAAAGGC 1439
||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 1379 CTTTGGGAGAGTTTGGCTCGAGGTGAAGCAAGATCTAATTCAAGAAGTGATTCAAAAGGC 1438
Query 1440 AAAGAAGAAGAGAAGAGTTTCGTTTTCTCGTCACTTCCTGTGGCTGTTGACTGGCTCCGG 1499
|| | |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1439 AACGGAGAAGACAAGAGTTTCGTTTTCTCGTCACTTCCTTTGGCTGTTGACTGGCTCCGG 1498
Query 1500 GACAATGCTCGCCAAAGTAAACAAGTTCGTTTTCAGGTGTTGGTAACTGGTTCATTACAT 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GACAATGCTCGCCAAAGTAAACAAGTTCGTTTTCAGGTGTTGGTAACTGGTTCATTACAT 1558
Query 1560 TTGGTGGGTGATCTCTTGAGATTTATCAAGAAATGAATATGTTTCTGCCATGTATTCTTG 1619
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1559 TTGGTGGGTGATCTCTTGAGATTAATCAAGAAATGAATATGTTTCTGCCATGTATTCTTG 1618
Query 1620 GCCAATCTTTGCCTGTAATGACTATATATCTCACAACATGATTTAACAAAAGAAAAGAAA 1679
|||||||| |||||||||| | || || | | ||||||||||||||||||||||||
Sbjct 1619 GCCAATCTCTGCCTGTAAT-A--AT----CTGA-A-CATGATTTAACAAAAGAAAAGAAA 1669
Query 1680 AGATATTTCGAC 1691
||||||||||||
Sbjct 1670 AGATATTTCGAC 1681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63458348170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5