BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55640.1 Length=1462 Score E Sequences producing significant alignments: (Bits) Value Ahg938506 jgi|Araly1|938506|scaffold_502697.1 1688 0.0 > Ahg938506 jgi|Araly1|938506|scaffold_502697.1 Length=1040 Score = 1688 bits (914), Expect = 0.0 Identities = 999/1041 (96%), Gaps = 1/1041 (0%) Strand=Plus/Plus Query 194 TTTGGATTTTTGGGCGGCAAAAATGGTGATGCAGACGGAAGCTAGGGTTGGTGTGAGCTC 253 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 1 TTTGGATTTTTGGGCGGC-AAAATGGTGATGCAGACGGAGGCTAGGGTTGGTGTGAGCTC 59 Query 254 AGGACATGGCGTAGCTTCGTCTTCTCATCGTTTAACGCAGGACCAGAGATCACATATCGA 313 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 AGGGCATGACGTAGCTTCGTCTTCTCATCGTTTAACGCAGGACCAGAGATCACATATCGA 119 Query 314 ATCGGCGTCGCAGCTCTTAGCCGGAGGACTCGCTGGTGCTTTTAGCAAGACTTGTACTGC 373 |||||| || ||||||||||||||||||||||| |||||||| ||||||||||| ||||| Sbjct 120 ATCGGCTTCTCAGCTCTTAGCCGGAGGACTCGCCGGTGCTTTCAGCAAGACTTGCACTGC 179 Query 374 TCCTCTATCTCGTCTCACCATTCTCTTCCAGGTGCAAGGTATGCACACAAATGCTGCAGC 433 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 180 TCCTCTCTCTCGTCTCACCATTCTCTTCCAGGTGCAAGGTATGCACACAAATGCTGAAGC 239 Query 434 TTTAAGAAAGCCAAGCATATTACACGAGGCTTCACGGATATTGAATGAAGAAGGATTGAA 493 | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 240 TCTAAGAAAGCCAAGCATATTACACGAGGCGTCACGGATATTGAATGAAGAAGGATTGAA 299 Query 494 AGCTTTTTGGAAAGGGAATCTAGTTACTATTGCTCACCGGCTTCCATATTCTTCTGTTAA 553 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 300 GGCTTTTTGGAAAGGGAATCTAGTTACTATTGCTCACCGGCTTCCATATTCTTCTGTCAA 359 Query 554 TTTCTACGCATATGAACACTACAAGAAGTTCATGTATATGGTTACTGGGATGGAAAATCA 613 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TTTCTGCGCATATGAACACTACAAGAAGTTCATGTATATGGTTACTGGGATGGAAAATCA 419 Query 614 CAAGGAGGGTATAAGTTCAAACCTTTTTGTACATTTTGTAGCCGGTGGTTTGGCTGGAAT 673 ||||| | ||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 420 CAAGGCGAGTATAAGCTCAAACGTTTTTGTACATTTTGTAGCCGGTGGTTTGGCTGGAAT 479 Query 674 CACAGCTGCTTCTGCCACTTATCCACTTGATCTTGTTAGAACTCGTCTTGCTGCTCAGAC 733 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 480 CACAGCTGCTTCTGCCACTTATCCGCTTGATCTTGTTAGAACTCGTCTTGCTGCTCAGAC 539 Query 734 AAAAGTAATCTACTACTCGGGTATCTGGCATACTCTGCGCTCTATTACAACCGATGAAGG 793 |||||||||||||||| ||||||||||||||||||||||| ||||||| | |||||||| Sbjct 540 AAAAGTAATCTACTACACGGGTATCTGGCATACTCTGCGCACTATTACTAGAGATGAAGG 599 Query 794 TATCTTGGGCCTCTACAAGGGACTAGGAACAACGCTTGTGGGTGTTGGGCCTAGTATTGC 853 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TATCTTGGGCCTCTACAAGGGACTAGGAACAACGCTTGTGGGTGTTGGGCCTAGTATTGC 659 Query 854 CATTAGCTTTTCTGTGTATGAATCATTGAGATCTTATTGGAGGTCAACTAGGCCCCATGA 913 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 CATTAGCTTTTCTGTGTATGAATCATTGAGATCTTATTGGAGGTCAACTAGGCCCCATGA 719 Query 914 TTCCCCTATCATGGTCAGTCTAGCTTGTGGAAGTCTTTCAGGAATAGCATCTTCAACAGC 973 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TTCCCCTGTCATGGTCAGTCTAGCTTGTGGAAGTCTTTCAGGAATAGCATCTTCAACAGC 779 Query 974 TACGTTTCCATTGGATCTGGTGAGAAGAAGGAAGCAGCTGGAAGGAATAGGCGGGCGAGC 1033 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 780 TACGTTTCCATTGGATCTGGTGAGAAGAAGGAAGCAGCTAGAAGGAATAGGCGGGCGAGC 839 Query 1034 GGTAGTGTACAAGACAGGTTTGTTAGGCACATTAAAGCGTATTGTTCAAACGGAAGGAGC 1093 |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| Sbjct 840 GGTAGTGTACAAGACAGGATTGTTAGGCACATTAAAGCGTATAGTTCAGACGGAAGGAGC 899 Query 1094 GAGAGGCCTGTACAGAGGAATTCTTCCAGAGTACTACAAAGTGGTACCTGGTGTAGGGAT 1153 ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 900 AAGAGGTTTGTACAGAGGAATTCTTCCAGAGTACTACAAAGTGGTACCTGGTGTTGGGAT 959 Query 1154 TTGCTTCATGACCTACGAGACACTCAAGCTTTACTTCAAGGATCTTTCTTCGAATCTATA 1213 ||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||| Sbjct 960 TTGCTTCATGACCTACGAGACACTCAAGCTTTACTTCAAAGATCTTTCCTCAAAGCTATA 1019 Query 1214 ACGGTTTAAAAGGTTGGTAGA 1234 |||||||||| |||| |||| Sbjct 1020 ACGGTTTAAACTGTTGATAGA 1040 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54697591820 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5