BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55710.1 Length=1530 Score E Sequences producing significant alignments: (Bits) Value Ahg486005 jgi|Araly1|486005|fgenesh2_kg.5__1997__AT3G55710.1 1808 0.0 Ahg486004 jgi|Araly1|486004|fgenesh2_kg.5__1996__AT3G55700.1 1594 0.0 Ahg898513 jgi|Araly1|898513|Al_scaffold_0005_2479 1225 0.0 > Ahg486005 jgi|Araly1|486005|fgenesh2_kg.5__1997__AT3G55710.1 Length=1417 Score = 1808 bits (979), Expect = 0.0 Identities = 1274/1414 (90%), Gaps = 29/1414 (2%) Strand=Plus/Plus Query 1 ATGGAAGAGAGAAAAGTGAAGAGAATTATCATGTTCCCTCTACCGTTTACAGGACACTTC 60 |||||||||||||||| || |||||| ||||||||||||||||| ||||| ||||||||| Sbjct 1 ATGGAAGAGAGAAAAGGGAGGAGAATAATCATGTTCCCTCTACCATTTACGGGACACTTC 60 Query 61 AACCCTATGATCGAGCTTGCTGGAATATTCCACAACCGTGGCTTCTCCGTCACGATACTC 120 ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 61 AACCCGATGATCGAGCTTGCTGGAATATTCCACCACCGTGGCTTCTCCGTCACGATCCTC 120 Query 121 CACACTTCTTTCAACTTCCCGGATCCTTCTCGCCATCCACAGTTTACTTTTCGAACTATC 180 |||||||| | ||||||||| |||||||||||||||||||| || ||||||||||| ||| Sbjct 121 CACACTTCCTACAACTTCCCTGATCCTTCTCGCCATCCACACTTCACTTTTCGAACCATC 180 Query 181 ACTCACAAAAACGAAGGAGAAGAAGACCCTCTCTCTCAATCAGAAACTTCTTCGGGTAAG 240 |||||| ||||||||||||||||||||||||| ||||||||||| || |||||||||||| Sbjct 181 ACTCACGAAAACGAAGGAGAAGAAGACCCTCTGTCTCAATCAGAGACGTCTTCGGGTAAG 240 Query 241 GACCTCGTCGTCCTTATTAGTCTGCTGAAACAATAC--TA-C-A-CCG---AGCC-GTCT 291 ||||| |||||||| ||||||||||||||||||| | || | | ||| ||| |||| Sbjct 241 GACCTTGTCGTCCTCATTAGTCTGCTGAAACAATGCTATACCGAGCCGTTTCGCCAGTCT 300 Query 292 CTTGCAGAGGAAGTAGGCGAAGGAGGGACGGTGTGTTGTTTGGTCTCCGACGCTCTATGG 351 ||||||| |||||||| || |||||||||||||||||||||| |||| |||||||||||| Sbjct 301 CTTGCAGCGGAAGTAGCCGGAGGAGGGACGGTGTGTTGTTTGATCTCTGACGCTCTATGG 360 Query 352 GGGAGGAACACGGAGATTGTAGCGAAAGAGATTGGAGTGT-GTACAATGGTGATGAGGAC 410 ||||||||||| ||| |||||||| ||||| ||||||| | ||| ||||||| ||||||| Sbjct 361 GGGAGGAACACCGAGGTTGTAGCGGAAGAGGTTGGAGT-TCGTAGAATGGTGTTGAGGAC 419 Query 411 TA-GTGGTGCGGCAACGTTTTGTGCTTATACAGCTTTCCCTCTCCTTATAGATAAGGGTT 469 | ||||||| | | |||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 420 -AGGTGGTGCCGTATCGTTTTGTGCTTATGCAGCTTTCCCTCTCCTTAGAGATAAGGGTT 478 Query 470 ACCTTCCTATACAAGGTTCTAGATTAGATGAGCTAGTGACAGAGCTTCCACCTTTGAAAG 529 |||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 479 ACCTCCCTATACAAGATTCTAGATTAGATGAGCTAGTGACAGAGCTTCCACCTTTAAAAG 538 Query 530 TGAAGGATCTTCCTGTAATAAAAACGAAAGAGCCTGAGGGACTAAACCGAATACTTAACG 589 ||||||||||||| |||||| |||| |||||||| |||| ||| |||| || |||||| Sbjct 539 TGAAGGATCTTCCGGTAATAGAAACAAAAGAGCCGGAGGAACTTTACCGGGTAGTTAACG 598 Query 590 ACATGGTGGAAGGAGCCAAGT-TATCTTCCGGAGTCGTATGGAACACATTTGAAGATCTT 648 ||||||||||||||||||||| | ||||| |||||| ||||||||| |||||||||||| Sbjct 599 ACATGGTGGAAGGAGCCAAGTCT-TCTTCAGGAGTCATATGGAACAGTTTTGAAGATCTT 657 Query 649 GAAAGACAT-TCACTCATGGATTGTCGCAGCAAGTTACAAGTTCCGTTGTTCCCAATCGG 707 ||||||| | ||||||||||||| ||||||||||||||||||||| || ||||| ||||| Sbjct 658 GAAAGAC-TCTCACTCATGGATTCTCGCAGCAAGTTACAAGTTCCTTTCTTCCCTATCGG 716 Query 708 ACCGTTTCACAAACATAG-AACCGATCTTCCACCGAAGCCAAAGAACAAGGACAAGGACG 766 |||||||||||||||| | || |||||||||||||||| ||||| | ||||||||| Sbjct 717 ACCGTTTCACAAACATTGCAA-CGATCTTCCACCGAAGACAAAG----A--ACAAGGACG 769 Query 767 ATGATGAAATATTAACCGATTGGCTTAACAAGCAAGCTCCGCAGTCTGTGGTCTATGTGA 826 |||||||||||||||||||||||||| ||||| ||| ||| ||||||||||||||||||| Sbjct 770 ATGATGAAATATTAACCGATTGGCTTGACAAGGAAGATCCACAGTCTGTGGTCTATGTGA 829 Query 827 GTTTTGGAAGCCTTGCAGCTATAGAAGAGAATGAGTTTTTCGAAATTGCTTGGGGTCTAA 886 |||||||||||||||||||||||||||| || |||||| |||| |||||||||||||||| Sbjct 830 GTTTTGGAAGCCTTGCAGCTATAGAAGAAAAGGAGTTTCTCGAGATTGCTTGGGGTCTAA 889 Query 887 GAAACAGCGAACTACCATTCTTGTGGGTGGTTAGGCCCGGGATGGTCCG-GGGAACCGAG 945 ||||||||||| |||||||||||||||||||||||| |||||||| || |||| ||| | Sbjct 890 AAAACAGCGAACGACCATTCTTGTGGGTGGTTAGGCCGGGGATGGTGCGAGGGA-CCGGG 948 Query 946 TGGCTTGAGTCATTGCCTTGTGGGTTTTTGGAAAATATTGGTCATCAGGGAAAAATTGTG 1005 ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| Sbjct 949 TGGCTTGAGTCATTGCCTTGTGGGTTTTTGGAAAACATTGGTCATAAGGGAAAATTTGTG 1008 Query 1006 AAATGGGTGAATCAACTAGAGACATTGGCCCATCCTGCGGTTGGAGCGTTTTGGACGCAC 1065 ||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| Sbjct 1009 AAATGGGTGAATCAACTAGAGGTATTGGCTCATCCTGCCGTTGGAGCGTTTTGGACGCAC 1068 Query 1066 TGTGGATGGAACTCAACAATAGAGAGCATATGTGAAGGTGTTCCAATGATATGTACGCCG 1125 || ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 1069 TGCGGATGGAACTCAACAATAGAGAGCATATGTGAAGGCGTTCCAATGATTTGTACGCCG 1128 Query 1126 TGTTTCTCGGACCAGCATGTGAACGCGAGGTACATCGTTGATGTATGGCGAGTCGGGATG 1185 |||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||| Sbjct 1129 TGTTTCTCGGACCAGCATGTAAACGCTAGGTACATTGTTGATGTATGGCGAGTTGGGATG 1188 Query 1186 ATGTTAGAGAGATGTAAGATGGAAAGGACGGAGATTGAGAAGGTAG-TAACAAGTGTAAT 1244 ||||||||||| | ||||| ||||||| |||||||||||| | | ||| || |||||| Sbjct 1189 GTGTTAGAGAGAAGCAAGATAGAAAGGAAGGAGATTGAGAATGC-GCTAAGAATTGTAAT 1247 Query 1245 GATGGAGAATGGAGCTGGATTGACAGAGATGTGTTTGGAGTTGAAAGAGAAAGCTAATGT 1304 ||||||||| |||| |||||||| ||||| | ||||| |||||||||||| |||| || | Sbjct 1248 GATGGAGAAAGGAGATGGATTGAGAGAGAGGAGTTTGAAGTTGAAAGAGAGAGCTGATTT 1307 Query 1305 TTGCTTAAGTGAAGATGGGTCTTCTTCCAAGTATCTAGACAAACTTGTCAGTCATGTCCT 1364 |||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 1308 TTGCTTAAGTAAAGATGGTTCTTCTTCCAAGTATCTAGATGAACTTGTCAGTCATGTCCT 1367 Query 1365 GTCTTTTGATTCCTCGGCTTTTGCAAGTTAAAAT 1398 |||||||||||||| ||||||||||||||||||| Sbjct 1368 GTCTTTTGATTCCTAGGCTTTTGCAAGTTAAAAT 1401 > Ahg486004 jgi|Araly1|486004|fgenesh2_kg.5__1996__AT3G55700.1 Length=1526 Score = 1594 bits (863), Expect = 0.0 Identities = 1266/1457 (87%), Gaps = 42/1457 (3%) Strand=Plus/Plus Query 1 ATGGAAGAGAGAAAAGTGAAGAGAATTATCATGTTCCCTCTACCGTTTACAGGACACTTC 60 ||||||||||||| || || |||||| ||||||||||||||||| ||| | ||||||||| Sbjct 62 ATGGAAGAGAGAAGAGGGAGGAGAATAATCATGTTCCCTCTACCATTTGCGGGACACTTC 121 Query 61 AACCCTATGATCGAGCTTGCTGGAATATTCCACAACCGTGGCTTCTCCGTCACGATACTC 120 ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 122 AACCCGATGATCGAGCTTGCTGGAATATTCCACCACCGTGGCTTCTCCGTCACGATCCTC 181 Query 121 CACACTTCTTTCAAC-TTCCCGGATCCTTCTCGCCATCCACAGTTTACTTTTCGAACTAT 179 |||||||| | |||| ||||| |||||||||||||| || || || ||||||||| | || Sbjct 182 CACACTTCCTACAACTTTCCC-GATCCTTCTCGCCACCCTCACTTCACTTTTCGATCCAT 240 Query 180 CACTCACAA-AAACGAAGGAGAAGAAGACCCTCTCTCTCAATCAGAAACTTCTTCGGGTA 238 | ||||||| ||| |||||||||||||||||||| ||||| ||||||| ||||| ||| Sbjct 241 CCCTCACAACAAA-GAAGGAGAAGAAGACCCTCTATCTCAGTCAGAAA---CTTCGAGTA 296 Query 239 AGGACCTCGTCGTCCTTATTAGTCTGCTGAAACAATACTACACCGAG-C----CGTC--T 291 ||||||| |||| || || ||| ||||||||||| |||| ||||| | |||| | Sbjct 297 TGGACCTCATCGTTCTCATGCGTCGGCTGAAACAATGCTACGCCGAGACGTTTCGTCAGT 356 Query 292 C-TT-GCAGAGGAAGTAGGCGAAGGAGGGACGGTGTGTTGTTTGGTCTCCGACGCTCTAT 349 | || |||||||||||||| | ||||| |||| ||||||||||||||||||||||| ||| Sbjct 357 CTTTGGCAGAGGAAGTAGGTGGAGGAGAGACGATGTGTTGTTTGGTCTCCGACGCTATAT 416 Query 350 GGGGGAGGAACACGGAGATTGTAGCGAAAGAGATTGGAGTGT-GTACAATGGTGATGAGG 408 |||| | || | ||||| |||||||| ||||||||||||| | ||| ||||| ||||| Sbjct 417 GGGGAAAGATCTCGGAGGTTGTAGCGGAAGAGATTGGAGT-TCGTAGGGTGGTGTTGAGG 475 Query 409 ACTA-GTGGTGCGGCAACGTTTTGTGCTTATACAGCTTTCCCTCTCCTTATAGATAAGGG 467 || | |||||||| | |||||||||||| | | |||| |||||| |||| |||||||| Sbjct 476 AC-AGGTGGTGCGTCGTCGTTTTGTGCTTTTGCCGCTTACCCTCTGCTTAGGGATAAGGG 534 Query 468 TTACCTTCCTATACAAGGTTCTAGATTAGATGAGCTAGTGACAGAGCTTCCACCTTTGAA 527 ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 535 ATACCTCCCTATACAAGATTCTAGATTAGATGAGCTAGTGACAGAGCTTCCACCTTTGAA 594 Query 528 AGTGAAGGATCTTCCTGTAATAAAAACGAAAGAGCCTGAGGGACTAAACCGAATACTTAA 587 ||| || |||||||| ||||| ||||||||||||| |||| ||| |||| || |||| Sbjct 595 AGTTAAAGATCTTCCGGTAATGGAAACGAAAGAGCCGGAGGAACTTTACCGGGTAGTTAA 654 Query 588 CGACATGGTGGAAGGAGCCAAGT-TATCTTCCGGAGTCGTATGGAACACATTTGAAGATC 646 ||| ||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||| Sbjct 655 CGATATGGTGGAAGGAGCCAAGTCT-TCTTCAGGAGTCATATGGAACACATTTGAAGATC 713 Query 647 TTGAAAGACAT-TCACTCATGGATTGTCGCAGCAAGTTACAAGTTCCGTTGTTCCCAATC 705 ||||||||| | ||||||||||||||| ||| |||||||||||||||||| ||||||||| Sbjct 714 TTGAAAGAC-TCTCACTCATGGATTGTAGCAACAAGTTACAAGTTCCGTTTTTCCCAATC 772 Query 706 GGACCGTTTCACAAACATAG-AACCGATCTTCCACCGAAGCCAAAGAACAAGGACAAGGA 764 |||||||||||||||||||| | ||||| ||||| |||| |||||||||||||| || Sbjct 773 GGACCGTTTCACAAACATAGCGA-CGATCATCCACTGAAGACAAAGAACAAGGAC---GA 828 Query 765 CGATGATGAAATATTAACC-GATTGGCTTAACAAGCAAGCTCCGCAGTCTGTGGTCTATG 823 | ||| ||| | |||| | ||||||| ||||||||| ||| |||||||| ||||| | Sbjct 829 C---GAT-AAA-A-CAACCTG-TTGGCTTGACAAGCAAGATCCACAGTCTGTAGTCTACG 881 Query 824 TGAGTTTTGGAAGCCTTGCAGCTATAGAAGAGAATGAGTTTTTCGAAATTGCTTGGGGTC 883 |||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| Sbjct 882 TGAGTTTTGGAAGCCTTGCAGCTATAGAAGAGAAGGAGTTTCTCGAGATTGCTTGGGGTC 941 Query 884 TAAGAAACAGCGAACTACCATTCTTGTGGGTGGTTAGGCCCGGGATGGTCCG-GGGAACC 942 |||||||||| || ||||||||||||||||||||||||| ||||||||||| ||| ||| Sbjct 942 TAAGAAACAGTAAATTACCATTCTTGTGGGTGGTTAGGCCAGGGATGGTCCGAGGG-ACC 1000 Query 943 GAGTGGCTTGAGTCATTGCCTTGTGGGTTTTTGGAAAATATTGGTCATCAGGGAAAAATT 1002 |||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| Sbjct 1001 GAGTGGCTTGAGTCATTGCCTTGTGGGTTTTTGGAAGACATTGGTCATAAGGGAAAAATT 1060 Query 1003 GTGAAATGGGTGAATCAACTAGAGACATTGGCCCATCCTGCGGTTGGAGCGTTTTGGACG 1062 |||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| Sbjct 1061 GTGAAATGGGTGAATCAACTAGAGGTTTTGGCGCATCCTGCCGTTGGAGCGTTTTGGACG 1120 Query 1063 CACTGTGGATGGAACTCAACAATAGAGAGCATATGTGAAGGTGTTCCAATGATATGTACG 1122 ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1121 CACTGCGGATGGAACTCAACACTAGAGAGCATATGTGAAGGTGTTCCAATGATATGTACG 1180 Query 1123 CCGTGTTTCTCGGACCAGCATGTGAACGCGAGGTACATCGTTGATGTATGGCGAGTCGGG 1182 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1181 CCGTGTTTCTCAGACCAGCATGTGAACGCGAGGTACATCGTTGATGTATGGCGAGTCGGT 1240 Query 1183 ATGATGTTAGAGAGATGTAAGATGGAAAGGACGGAGATTGAGAAGGTAGTAACAAGTGTA 1242 ||| ||||||||||| |||||||||||| || |||||||||||| | | ||| ||||||| Sbjct 1241 ATGGTGTTAGAGAGAAGTAAGATGGAAATGAAGGAGATTGAGAATGCACTAAGAAGTGTA 1300 Query 1243 ATGATGGAGAATGGAGCTGGATTGACAGAGATGTGTTTGGAGTTGAAAGAGAAAGCTAAT 1302 ||||||||||| |||| || ||||| ||||| | || || |||| ||||||| ||| || Sbjct 1301 ATGATGGAGAAGGGAGATGAATTGAGAGAGAGGAGTCTGAAGTTAAAAGAGAGTGCTGAT 1360 Query 1303 GTTTGCTTAAGTGAAGATGGGTCTTCTTCCAAGTATCTAGACAAACTTGTCAGTCATGTC 1362 ||||||||| | ||||||| ||||| |||||| || |||| |||||||| ||||||||| Sbjct 1361 TTTTGCTTAACTAAAGATGGATCTTCGTCCAAGAATTTAGAAAAACTTGTGAGTCATGTC 1420 Query 1363 CTGTCTTTTGATTCCTCGGCTTTTGCAAGTTAAAATAAATTAC-AAGGAGCAAAATGT-C 1420 ||||||||| |||| | |||||||||||||| || |||| | || ||| || | | | Sbjct 1421 CTGTCTTTTAATTCTTATGCTTTTGCAAGTTAGAA-AAATCATGAATGAGTAATGTATTC 1479 Query 1421 TAGGCACTTTTCAAAAT 1437 || ||||| |||||||| Sbjct 1480 TAAGCACTCTTCAAAAT 1496 > Ahg898513 jgi|Araly1|898513|Al_scaffold_0005_2479 Length=1392 Score = 1225 bits (663), Expect = 0.0 Identities = 1178/1421 (83%), Gaps = 57/1421 (4%) Strand=Plus/Plus Query 1 ATGGAAGAGAGAAAAGTGAAGAGAATTATCATGTTCCCTCTACCGTTTACAGGACACTTC 60 ||||| ||||||||||||| || ||| |||||||||||| |||||||| | ||||||||| Sbjct 1 ATGGATGAGAGAAAAGTGAGGAAAATAATCATGTTCCCTTTACCGTTTCCGGGACACTTC 60 Query 61 AACCCTATGATCGAGCTTGCTGGAATATTCCACAACCGTGGCTTCTCCGTCACGATACTC 120 ||||| |||||| | || || ||||||||||| |||||||||||||||||||||| ||| Sbjct 61 AACCCAATGATCCAACTCGCCAGAATATTCCACCACCGTGGCTTCTCCGTCACGATCCTC 120 Query 121 CACACTTCTTTCAACTTCCCGGATCCTTCTCGCCATCCACAGTTTACTTTTCGAACTATC 180 |||||||| ||||||| ||| ||||||||| | | |||| || ||||||||||| ||| Sbjct 121 CACACTTCATTCAACTCCCCAAATCCTTCTCACTACCCACTCTTCACTTTTCGAACCATC 180 Query 181 ACTCACAAAAACGAAGGAGAAGAAGACCCTCTCTCTCAATCAGAAACTTCTTCGGGTAAG 240 ||||||| |||||||||| |||||| ||||| ||||| ||||| |||| | ||| | Sbjct 181 CCTCACAACAACGAAGGAGGAGAAGATCCTCTGACTCAACCAGAAGCTTC-T--AGTATG 237 Query 241 GACCTCGTCGTCC-TTATTAGTCTGCTGAAACAATA-CTACACCGAG-C----CGTC--T 291 || || |||| || ||||| | ||||||| |||| | ||| | ||| | |||| | Sbjct 238 GATCTTGTCG-CCTTTATTCGACTGCTGAGACAA-ACCTATGCGGAGACGTTTCGTCAGT 295 Query 292 CT-T-GCAGAGGAAGTAGGCGAAGGAGGGACGGTGTGTTGTTTGGTCTCCGACGCTCTAT 349 || | || | ||||||||| | ||||| |||| |||||||||| |||||||| ||| | | Sbjct 296 CTCTGGCGGCGGAAGTAGGTGGAGGAGAGACGATGTGTTGTTTTGTCTCCGATGCTGTTT 355 Query 350 GGGGGAGGAACACGGAGATTGTAG-CGAAAGAGATTGGAGTGTGTACAATGGTGATGAGG 408 ||| ||||||||||||| | | || ||||| || | ||||| ||| | | ||| ||| Sbjct 356 GGGCGAGGAACACGGAGGTCGCAGCCGAAA-AGGTCGGAGTACGTAGAGTAGTGTTGATT 414 Query 409 ACTAGTGGTGCGGCAACGTTTTGTGCTTATACAGCTTTCCCTCTCCTTATAGATAAGGGT 468 || ||||||| ||| |||||||||||| | | |||||||||||||||| ||||||| | Sbjct 415 ACAAGTGGTGTGGCGTCGTTTTGTGCTTTTGCTGCTTTCCCTCTCCTTAGAGATAAGCAT 474 Query 469 TACCTTCCTATACAAGGTTCTAGATTAGATGAGCTAGTGACAGAGCTTCCACCTTTGAAA 528 ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 475 TACCTCCCTATACAAGAATCTAGATTAGATGAGCTAGTGACAGAGCTTCCACCTTTGAAA 534 Query 529 GTGAAGGATCTTCCTGTAATAAAAACGAAAGAGCCTGAGGGACTAAACCGAATACTTAAC 588 || ||||||||||| ||||| ||||||| ||||| |||| |||| |||| || ||||| Sbjct 535 GTTAAGGATCTTCCGGTAATGGAAACGAATGAGCCGGAGGAACTATACCGGGTAGTTAAC 594 Query 589 GACATGGTGGAAGGAGCCAAGT-TATCTTCCGGAGTCGTATGGAACACATTTGAAGATCT 647 || ||||| |||||||| ||| | ||||| ||| || ||||||||||||| |||||||| Sbjct 595 GATATGGTTAAAGGAGCCGAGTCT-TCTTCAGGACTCATATGGAACACATTCGAAGATCT 653 Query 648 TGAAAGACAT-TCACTCATGGATTGTCGCAGCAAGTTACAAGTTCCGTTGTTCCCAATCG 706 |||||||| | ||||||||||||| | | |||||||| |||||||| | ||||| || | Sbjct 654 TGAAAGAC-TCTCACTCATGGATTTTAGGAGCAAGTTTCAAGTTCCCATATTCCCGATTG 712 Query 707 GACCGTTTCACAAACATA--GAACCGATCTTCCACCGAAGCCAAAGAACAAGGACAAGGA 764 |||||||||||||||||| ||| |||||| ||||| | ||||||||| | || || Sbjct 713 GACCGTTTCACAAACATAGCGAA--AATCTTCTACCGATGATAAAGAACAA--AGAA-GA 767 Query 765 CGATGATGAAATATTAACCGATTGGCTTAACAAGCAAGCTCCGC-AGTCTGTGGTCTATG 823 | ||| | | | |||||||||||| || ||||||| ||| | ||||||| ||||||| Sbjct 768 CCATG-T---A-A-CAACCGATTGGCTCAATAAGCAAGATCC-CAAGTCTGTAGTCTATG 820 Query 824 TGAGTTTTGGAAGCCTTGCAGCTATAGAAGAGAATGAGTTTTTCGAAATTGCTTGGGGTC 883 | |||||||| ||||||||| |||||| ||||| |||||| |||| ||||||||||||| Sbjct 821 TAAGTTTTGGGAGCCTTGCAAATATAGAGGAGAAGGAGTTTCTCGAGATTGCTTGGGGTC 880 Query 884 TAAGAAACAGCGAACTACCATTCTTGTGGGTGGTTAGGCCCGGGATGGTCCG-GGGAACC 942 |||||||||| |||| ||| || ||||||||||||||||| ||| | ||||| || || Sbjct 881 TAAGAAACAGTGAACGACCCTTTTTGTGGGTGGTTAGGCCAGGGTTAGTCCGAAGG-ACT 939 Query 943 GAGTGGCTTG-AGTCATTGCCTTGTGGGTTTTTGGAAAATATTGGTCATCAGGGAAAAAT 1001 |||||||| | || |||||||| |||| ||| ||||||| ||||| || |||||||| | Sbjct 940 GAGTGGCTGGAAG-CATTGCCTAGTGGATTTGTGGAAAACATTGGCCAGAAGGGAAAATT 998 Query 1002 TGTGAAATGGGTGAATCAACTAGAGACATTGGCCCATCCTGCGGTTGGAGCGTTTTGGAC 1061 ||| ||||||||||||||| ||||| |||||| ||| |||| ||||| || |||||||| Sbjct 999 TGTAAAATGGGTGAATCAATTAGAGGTATTGGCGCATTCTGCTGTTGGGGCATTTTGGAC 1058 Query 1062 GCACTGTGGATGGAACTCAACAATAGAGAGCATATGTGAAGGTGTTCCAATGATATGTAC 1121 ||| |||||||||||||| ||| |||| |||||||||||||||||||||||||||||||| Sbjct 1059 GCATTGTGGATGGAACTCGACACTAGAAAGCATATGTGAAGGTGTTCCAATGATATGTAC 1118 Query 1122 GCCGTGTTTCTCGGACCAGCATGTGAACGCGAGGTACATCGTTGATGTATGGCGAGTCGG 1181 ||||||||| |||||||| |||||| ||||||||||| ||||||||||||||| |||| Sbjct 1119 ACCGTGTTTCACGGACCAGTTTGTGAATGCGAGGTACATTGTTGATGTATGGCGAATCGG 1178 Query 1182 GAT-GATGTTAGAGAGATG-TAAGATGGAAAGGACGGAGATTGAGAAGGTAGTAAC-AAG 1238 ||| || |||||||||| | || |||||| |||| ||||||||||||||| || || ||| Sbjct 1179 GATTGA-GTTAGAGAGA-GCTACGATGGATAGGAAGGAGATTGAGAAGGT-GTTACGAAG 1235 Query 1239 TGTAATGATGGAG-AATGGAGCTGGA-TTGACAGAGATGTGTTTGGAGTTGAAAGAGAAA 1296 ||||||||| || || |||| | || || | ||||||||||||| | |||||||||| | Sbjct 1236 TGTAATGATAAAGGAA-GGAGATTGAATT-AGAGAGATGTGTTTGAAATTGAAAGAGAGA 1293 Query 1297 GCTAATGTTTGCTTAAGTGA-AGATGGGTCTTCTTCCA-AGTATCTAGACAAACTTGTCA 1354 |||||||||||||||||| | ||||||||||||||||| | |||||||||| |||||| | Sbjct 1294 GCTAATGTTTGCTTAAGT-ATAGATGGGTCTTCTTCCATA-TATCTAGACACACTTGTGA 1351 Query 1355 GTCATGTCCTGTCTTTTGATTCCTCG-GCTTTTGCAAGTTA 1394 ||||||||||||||||||| ||| | | |||||||||| Sbjct 1352 ATCATGTCCTGTCTTTTGAT-CCTTATGATGTTGCAAGTTA 1391 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57287728480 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5