BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56060.1
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938553 jgi|Araly1|938553|scaffold_502744.1 2713 0.0
Ahg916815 jgi|Araly1|916815|Al_scaffold_0008_1566 1014 0.0
Ahg495263 jgi|Araly1|495263|fgenesh2_kg.8__1079__AT5G51950.1 662 0.0
Ahg949744 jgi|Araly1|949744|scaffold_801631.1 298 1e-79
> Ahg938553 jgi|Araly1|938553|scaffold_502744.1
Length=1774
Score = 2713 bits (1469), Expect = 0.0
Identities = 1669/1767 (94%), Gaps = 8/1767 (0%)
Strand=Plus/Plus
Query 14 TATAATCTTCCTCTATAATGAATTTTCATATCTTT-CGATTTTTTCAAT-TTATCCTCGT 71
||||||||| |||| |||||||||| ||||| ||| ||||| |||| || |||||||| |
Sbjct 4 TATAATCTTGCTCTCTAATGAATTTCCATAT-TTTCCGATTATTTC-ATATTATCCTCCT 61
Query 72 CGCAGTTTTCATCTTCCACGACTCGTGTTATTCCGATGAAGCTGGAAACTATAGATTTAT 131
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 62 CGCAGTTTTCATCTTCCACGACTCGTGTTATTCCGATGAAGCTGGAAACTATGGATTTAT 121
Query 132 GAAAGATGCAACATTAGCACCAAAGTTATCTCACTTCGACTACATAATCATCGGAGGAGG 191
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 GAAAGATGCAACATCAGCACCAAAGTTATCTCACTTCGACTACATAATCATCGGAGGAGG 181
Query 192 AACCGCTGGATGTGCATTAGCCGCAACGCTCTCTCAAAACGCAACCGTTCTAGTCCTCGA 251
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 182 AACCGCTGGATGTGCATTAGCCGCAACGCTCTCTCAAAACGCAACCGTTTTAGTCCTCGA 241
Query 252 ACGCGGAGGTTCCCCTTACGACGATCCAGCGGCAACAGACATCGGA-AACTTCGCAAACA 310
|||||| ||||||||||| ||| | ||| |||| ||||||| | |||||||| ||||
Sbjct 242 ACGCGGCGGTTCCCCTTATGACAACCCAACGGCCTCAGACATAA-ACAACTTCGCGAACA 300
Query 311 CACTCTTGAACATAACTCCAAACTCATGGTCGCAGCTTTTCATCTCCGAAGACGGCGTTT 370
|||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 301 CACTCTTGGACATAACTCCAAACTCATGGTCACAGCTATTCATCTCCGAAGACGGCGTTT 360
Query 371 TCAACTCACGCGCTCGTGTACTCGGTGGAGGCACAGTCATAAACGCAGGATTCTACTCAC 430
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 361 TCAACTCACGCGCTCGTGTACTAGGTGGAGGCACGGTCATAAACGCAGGGTTCTACTCAC 420
Query 431 GTGCGGAAGAAGATTTCGTGGCGGAAGCAGGATGGGAGAGAGACGAGGTCGAAGCGGCTT 490
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 421 GTGCGGAAGAAGATTTCGTGGCGGAAGCAGGATGGGAGAGAGATGAGGTCGAAGCGGCTT 480
Query 491 ACGAGTGGGTCGAGAAGAAAGTGGTTTTTGAACCACCGGTTAACAAATGGCAATCAGCGT 550
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 481 ACGAGTGGGTCGAGAAGAAAGTGGTTTTTGAACCACCGGTTAAGGGATGGCAATCGGCGT 540
Query 551 TTCGAGATGGGCTTTTGGAAGCTGGTGTGACTCCATACAATGGTTTCACGTACGAACATA 610
|| ||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 541 TTAGAGATGGACTTTTGGAAGCTGGTGTGAGTCCGTACAATGGTTTCACGTACGAACATA 600
Query 611 TCGTTGGGACTAAATTTGGTGGTACGATATTTGACCGGGATGGTCATAGACACACGGCGG 670
|||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 601 TCGTTGGGACGAAGTTTGGTGGTACGATATTTGACCCGGATGGTCATAGACACACGGCGG 660
Query 671 CGAATTTGTTGGAGTATGCTAATCCGAACATGATAGTTGTCTACTTGCATGCTTCTGTCC 730
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 661 CGAATTTGTTGGAGTATGCTAATCCGAACACGATTGTTGTCTACTTGCATGCTTCTGTCC 720
Query 731 ATAAGATCCTCTTCACTATTAAAGGTAACCAGAGGCCCAAAGCATATGGGGTGATATTTC 790
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 721 ATAAGATCCTCTTCACTAATAAAGGTAACCAGAGGCCCAAAGCATATGGAGTGATATTTC 780
Query 791 TGGACGCAAATGGAGTGTCCTACAAGGCAGAATTGGCAACGCAAGACTCGACAATGAGTG 850
||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 781 AGGATGCAAATGGAGTGTCCTACAAGGCAGAATTGGCAACGCAAGACTCAATAATGAGTG 840
Query 851 AGGTGATCTTATCAGCAGGTGCCATCGCGAGCCCTCAACTATTGATGCTAAGTGGTGTGG 910
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 841 AGGTGATCTTATCGGCAGGTGCCATCGCGAGCCCGCAACTATTGATGCTAAGTGGTGTGG 900
Query 911 GCCCTGCGGCTCATCTTGCAGCCTATAGAGTGAACCCGGTCATCGTAGATCAACCCATGG 970
|||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 901 GCCCTGCGGCTCATCTTGCAGCCTATGGGGTGAATCCGGTCATCGTAGATCAACCCATGG 960
Query 971 TGGGCCAAGGGATGGGTGATAACCCGATGAATCCGGTTTTTATCCCTTCTCCTGAACCCG 1030
|||| ||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 961 TGGGGCAAGGGATGAGTGACAACCCGATGAATCCGGTTTTCATCCCTTCTCCTGAGCCCG 1020
Query 1031 TAGAAGTGTCTCTTGTACAAGCCGTAGGAATCACCAAGTTTGGTAGTTACATTGAAGGTG 1090
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1021 TAGAAGTGTCTCTTGTACAAGCCGTTGGAATCACCAAGTTTGGTAGTTACATTGAAGGTG 1080
Query 1091 GAAGTGCCTTAAGTCTCTCTATTAGTTTGACCCGTAGCTTCTTCGATGGTGTTTTGAATC 1150
|||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1081 GAAGTGCCTTGAGTGTCTCTATTAGTTTGACTCGTAGCTTCTTCGATGGTGTTTTGAAGC 1140
Query 1151 TTCTTAAAAAGACAAAACTT-CCTACCCAATCCATCTCAAAGTTTTTCAAATCTTTGGAT 1209
||||| ||||||||||| || |||||||||||||||||||||||||||||| ||||||||
Sbjct 1141 TTCTTGAAAAGACAAAA-TTACCTACCCAATCCATCTCAAAGTTTTTCAAAACTTTGGAT 1199
Query 1210 CTTACCTTGAACGTGACTACAAAAGCGGGTGTGATCATCCAAAAAGTGAATGGACCGCTC 1269
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1200 CTTACCTTGAACGTGACAACAAAAGCGGGTGTGATCATCCAAAAAGCGAATGGACCGCTC 1259
Query 1270 TCGAGAGGTCACTTGGAGTTGCGGAATACGAATCCAGATGATAACCCTTCAGTGACATTC 1329
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1260 TCGAGAGGTCATTTGGAGTTGCGGAACACGAATCCAGATGATAACCCTTCAGTGACATTC 1319
Query 1330 AACTACTTTAAGGATCCAGAGGATTTGAACAAGTGTGTTGAAGGACTTAGTACCATTATT 1389
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AACTACTATAAGGATCCAGAGGATTTGAACAAGTGTGTTGAAGGACTTAGTACCATTATT 1379
Query 1390 AAAGTGATAGATTCGAAGGGATACTCCAAGTACAAGTACCCTTTAGCGAGTGCACGTGGA 1449
|||||||||||||||||||||||||||||||||||||||||| | ||||||| || |||
Sbjct 1380 AAAGTGATAGATTCGAAGGGATACTCCAAGTACAAGTACCCTGCACCGAGTGCGCGCGGA 1439
Query 1450 CTACTAAATCTCATTCTTGCTCTTCCCACTAATTTAAGGCCAAGACACATAACTTCAACG 1509
|||||||||||||||||||| |||||||| ||| | |||||||||||||| |||||||||
Sbjct 1440 CTACTAAATCTCATTCTTGCCCTTCCCACCAATCTGAGGCCAAGACACATCACTTCAACG 1499
Query 1510 TTTGATTTGGAGCAGTATTGTATCGATACCGTGATGACTATTTATCATTACCATGGAGGT 1569
|| || ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1500 TTCGACTTGCAGCAGTATTGTATTGATACCGTGATGACTATTTATCATTACCATGGAGGT 1559
Query 1570 TGTCAAGTTGGAAAAGTGGTCGACAACAATTACAAAGTATTAGGGGTTGATGCTTTGAGG 1629
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1560 TGTCAAGTTGGAAAAGTGGTCGACAACAATTACAAAGTATTAGGGATTGATGCTTTGAGG 1619
Query 1630 ATCATCGATGGATCCACGTTTCTCAAGTCTCCGGGGACTAATCCACAGGCCACAATCATG 1689
||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||
Sbjct 1620 GTCATCGATGGATCCACGTTTCTCAAATCTCCAGGGACTAATCCCCAGGCCACGATCATG 1679
Query 1690 ATGCTCGGAAGATATATGGGGCAGAAGATTCTTCGAGAGAGGATGGCTTTCCGAGGAAAA 1749
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1680 ATGCTCGGAAGGTATATGGGGCAGAAGATTCTTCGAGAGAGGATGGCTTTCCAAGGGAAA 1739
Query 1750 GAGGAAGAAACATGAGATTTCTAAGTA 1776
|| ||||||||||||||||||||||||
Sbjct 1740 GAAGAAGAAACATGAGATTTCTAAGTA 1766
> Ahg916815 jgi|Araly1|916815|Al_scaffold_0008_1566
Length=1683
Score = 1014 bits (549), Expect = 0.0
Identities = 1329/1694 (78%), Gaps = 100/1694 (6%)
Strand=Plus/Plus
Query 63 TATCCTCGTCGCAGTTTTCATCTTCCA-C-GACTCGTGTTATTCCGATGAAGCTGGAAAC 120
||| ||||||||| |||| ||||| | | | ||| ||||||| |||| |||| ||| |
Sbjct 30 TATTCTCGTCGCAATTTTAATCTT--ATCTGGCTCTTGTTATTGCGATAAAGCCGGACAT 87
Query 121 TATAGATTTATGAAAGATGCAACATTAGCACCAAAGTTAT-CTCACTTCGACTACATAAT 179
|||| ||||||||| ||||||||||| ||||||||| || ||| ||| || ||||||
Sbjct 88 TATACATTTATGAATGATGCAACATTGGCACCAAAG-CATGCTCGTTTCAACGACATAAC 146
Query 180 CATCGGAGGAGGAACCGCTGGATGTGCATTAGCCGCAACGCTCTCTCAAAACGCAACCGT 239
|||||| ||||||||||| || ||||||||||||||||| |||||||||||||| | |||
Sbjct 147 CATCGGTGGAGGAACCGCAGGTTGTGCATTAGCCGCAACACTCTCTCAAAACGCCAGCGT 206
Query 240 TCTAGTCCTCGAACGCGGAGGTTC-CCCTTACGACGAT-CCAGCGGCAACAGACATCGGA 297
| | || || |||||||| || || ||| || ||| || ||| |||| | || || ||
Sbjct 207 TTTGGTTCTAGAACGCGGTGGCTCGCCC-TATGACAATCCCA-CGGCCAGTGATATTGGC 264
Query 298 AACTTCGCAAACACACTCTTGAACATA-ACTCCAAACTCATGGTCGCAGCTTTTCATCTC 356
|||||||| ||||||||||| |||| | || || |||||||||||||||| |||||||||
Sbjct 265 AACTTCGCCAACACACTCTTTAACA-ACACACCGAACTCATGGTCGCAGCATTTCATCTC 323
Query 357 CGAAGACGGCGTTTTCAACTCAC-GCGCTCGTGTACTCGGTGGAGGCACAGTCATAAACG 415
||| |||||||||| |||| ||| || | ||||| |||||||||||| | || |||||||
Sbjct 324 CGAGGACGGCGTTTACAACACACGGC-CACGTGTCCTCGGTGGAGGCTCGGTAATAAACG 382
Query 416 CAGGATTCTACTCACGTGCGGAAGAAGATTTCGTGGCGGAAGCAGGA-TGGGAGA-GAGA 473
||||||||| | ||||||| || |||| ||||| ||||| || ||||||| | ||
Sbjct 383 GTGGATTCTACACGCGTGCGGGCGATGATTACGTGGATGAAGC-TGAGTGGGAGATG-GA 440
Query 474 CGAGGTCGAAGCGGCTTACGAGTGGGTCGAGAAGAAAGTGGTTTTTGAA-CCACCGGTTA 532
|| || ||||| ||||| ||||||||||||||||| | | | || || |||| || |
Sbjct 441 GGAAGTGGAAGCTTCTTACCAGTGGGTCGAGAAGAAACTTG-TGTTCAAGCCACAAGTGA 499
Query 533 ACAAATGGCAATCAGCGTTTC-GAGATGGGCTTTTGGAAGCTGGTGTGACTCCATACAAT 591
||||||||| ||| ||| ||||||||||||||| ||||| | | ||| |||||
Sbjct 500 TGGGATGGCAATCGGCG-TTCAAAGATGGGCTTTTGGAGGCTGGAGAGTTTCCGGACAAT 558
Query 592 GGTTTCACGTACGAACATATCGT-TGGGACTAA-ATTTGGTGGTACGATATTTGACCGGG 649
|||||||||||||| |||||| | |||||||| | | ||||||||||| ||||||| |
Sbjct 559 GGTTTCACGTACGATCATATC-TACGGGACTAAGA-TCGGTGGTACGATCTTTGACCATG 616
Query 650 ATGGTCATAGACACACGGCGGCGAATTTGTTGGAGTATGCTAATCCGAACATGATAGTTG 709
||||||||||| || ||||| |||||||| ||||||||| ||||| | ||| ||||
Sbjct 617 CCGGTCATAGACATACCGCGGCCAATTTGTTAGAGTATGCTGATCCGGAGGCGATTGTTG 676
Query 710 TCTACTTGCATGCTTCTGTCCATAAGATCCTCTTCACTATTAAAGGTAACCAGAGGCCCA 769
| ||||||||||||| ||| || |||||||||||||| | ||||||| ||||| || |
Sbjct 677 TTTACTTGCATGCTTATGTTCACAAGATCCTCTTCACCACCAAAGGTAGCCAGAAACCAA 736
Query 770 AAGCATATGGGGTGATATTTCTGGACGCAAATGGAGTG-TCCTACAAGGCAGAATTGGCA 828
||||||| | ||||||||| ||||||||||||| || ||| ||||||||| | ||
Sbjct 737 AAGCATACGAAGTGATATTTGAGGACGCAAATGGAATGTTCC-ACAAGGCAG-A---GCT 791
Query 829 ACGC-AAGACTCGACAATGAGTGAGGTGATCTTATCAGCAGGTGCCATCGCG-AGCCCTC 886
| || || | || |||||| || |||||||| || || || || || | | ||||| |
Sbjct 792 A-GCAAATA-ACG-CAATGAACGAAGTGATCTTGTCTGCTGGAGCAAT-GGGTAGCCCGC 847
Query 887 AACTATTGATGCTAAGTGGTGTGGGCCCTGCGGCTCATCTTGCAGCCT-ATAGAGTGAAC 945
|||| |||||||||||||| || || ||||| || |||||||| | || | | |||||
Sbjct 848 AACTGTTGATGCTAAGTGGCGTAGGTCCTGCAGCCCATCTTGC-GGCTCACGGCGTGAAT 906
Query 946 CCGGTCATCGTAGATCAACCC-ATGG-TGGGCCAAGGGATGGGTGATAA-CCCGATGAAT 1002
|| || || |||||| |||| |||| |||| || | ||| | |||||| ||| |||||
Sbjct 907 CCACTCGTCCTAGATC-ACCCTATGGTTGGG-CATGAGATCGCTGATAATCCC-ATGAA- 962
Query 1003 CCGGTT-T-TT-ATCCCTTCTCCTGAACCCGTAGAAGTGTCTCTTGTACAAGCCGTAGGA 1059
| ||| | || |||||||||||| |||| ||||||||||| || ||||| | || ||
Sbjct 963 -C-GTTGTATTCATCCCTTCTCCTCAACCAGTAGAAGTGTCCCTCATACAAACTGTTGGG 1020
Query 1060 ATCACCAAGTTTGGTAGTTACATTGAAGGTGGAAGTGCCTTAAGTCTCTCTATTAG-TTT 1118
||||| ||||||| ||||||||||||||||||||||| ||| ||||||||| || | ||
Sbjct 1021 ATCACAAAGTTTGATAGTTACATTGAAGGTGGAAGTGGCTTGAGTCTCTCT-TTTGACTT 1079
Query 1119 GACCCGTAGCTTCTTCGATGGTGTTTTGAATCTTCTT-A--A-A-AA---G-AC-A-A-- 1165
||||||||| || ||||||||||||||||||||| || | | | || | || | |
Sbjct 1080 GACCCGTAGGTTTTTCGATGGTGTTTTGAATCTTTTTAACGAGACAAGCCGTACTACATC 1139
Query 1166 -A--ACT-TCCT-ACCCAATCCATCTCAAAGT--TTTTCAAATCTTTGGATCTTACCTTG 1218
| | | |||| ||||| || || | |||| |||| ||||||||||||||| |||
Sbjct 1140 TAGGAATATCCTGACCCACTCTAT-T-GAAGTCCTTTTGAAATCTTTGGATCTTGGATTG 1197
Query 1219 AACGTGACT-ACAAAAGCGGGTGTGATCATCCAAAAAGT-GAATGGACC-GCTCTCGAGA 1275
|||| | | | || | |||| ||||| | |||||| | | ||||||| || ||| | |
Sbjct 1198 GACGT-AATGATTAATGGGGGTTTGATCGTTCAAAAAATCG-ATGGACCGGC-CTCAAAA 1254
Query 1276 GGTCACTTGGAGTTGCGGAATACGAATCC-AGATGATAACCCTTCAGTGACATTCAACTA 1334
|| ||| ||||| | ||||| ||| | || || ||||||||||||||||||||||||||
Sbjct 1255 GGACACATGGAGCTCCGGAACACGGACCCAAG-GGATAACCCTTCAGTGACATTCAACTA 1313
Query 1335 CTTT-AAGGATCCAGAGGATTTGAACAAGTGTGTTGAAGGACTTAGTACCATTATTAA-A 1392
|| | ||| | || ||||||||||||||||||||| |||| |||| ||| ||||| | |
Sbjct 1314 CTATCAAGAA-CCTGAGGATTTGAACAAGTGTGTTAAAGGGCTTAACACCGTTATTCAGA 1372
Query 1393 GTGATAGATTCGAAGGGATACTCCAAGTACAAGTACCCTT-TAGCGAGTGCACGTG-GAC 1450
|||| |||| || | | |||||||||||||||||| | | || ||||||| | |
Sbjct 1373 C-GATAAATTCTAAAGCCTTCTCCAAGTACAAGTACCCAGGT-GTGACCGCACGTGAG-C 1429
Query 1451 TACTAAATCTCATTCTTGCTC-TTCCCA-CTAATTTAAGGCCAAGACACATAACTTCAAC 1508
| || |||||||| ||| | |||||| | ||| | ||| |||| ||| | || |||||
Sbjct 1430 TGCTCAATCTCATG-TTGGGCCTTCCCATC-AATCTGAGGACAAGGCACGTGACCTCAAC 1487
Query 1509 GTTTGATTTGGA-GCAGTATTGTATCGATACCGTGATGACTATTTATCATTACCATGGAG 1567
||| | ||| | ||||| ||| ||||| || ||||||| ||||| |||||||||||||
Sbjct 1488 GTTCAACTTG-ACGCAGTTTTGCATCGACACTGTGATGAGTATTTGGCATTACCATGGAG 1546
Query 1568 GTTGTCAAGTTGGAAAAGTGGTCGACAACAATTACAAAGT-ATTAGGGGTTGATGCTTTG 1626
|||| |||||||||| |||||| ||||| ||||||||||| || ||| | ||| | ||
Sbjct 1547 GTTGCCAAGTTGGAAGAGTGGTTGACAAGAATTACAAAGTCAT-AGGCATAGATTCCTTA 1605
Query 1627 AGGATCATCGATGGATCCACGTTTCTCAAGTCTCCGGGGACTAATCCACAGGCCACAATC 1686
||| | |||||||||||||| ||||| |||||||| ||||||||||| || ||||| ||
Sbjct 1606 AGGGTAATCGATGGATCCACATTTCTGAAGTCTCCAGGGACTAATCCCCAAGCCACGGTC 1665
Query 1687 ATGATGCTCGGAAG 1700
|||||||| |||||
Sbjct 1666 ATGATGCTTGGAAG 1679
> Ahg495263 jgi|Araly1|495263|fgenesh2_kg.8__1079__AT5G51950.1
Length=1983
Score = 662 bits (358), Expect = 0.0
Identities = 854/1090 (78%), Gaps = 48/1090 (4%)
Strand=Plus/Plus
Query 81 CATCTTCCACGACTCGTGTTATTCC-GATGAAGCTGGAAACTATAGATTTATGAAAGATG 139
||||| ||| | |||||||| | || ||| ||||||| | || || |||||||||||||
Sbjct 81 CATCTCCCATGCCTCGTGTT-TGCCAGATAAAGCTGGCTATTACAGTTTTATGAAAGATG 139
Query 140 CAACATTAGCACCAAAGTTATCTCACTTCGACTACATAATCATCGGAGGAGGAACCGCTG 199
|||||| ||||||| ||| ||| || || |||||| |||||||||||||||| | |
Sbjct 140 CAACATCGGCACCAATGTTCGCTCGGTTTGATTACATAGTCATCGGAGGAGGAACTTCGG 199
Query 200 GATG-TGCATTAGCCGCAACGCTCTCTCAAAACGCAACCGTTCTAGTCCTCGAACGCGGA 258
| || | | |||||||||||||| |||||||||| | |||| | || || ||||| ||
Sbjct 200 GTTGCT-CGTTAGCCGCAACGCTAGCTCAAAACGCTAGCGTTTTGGTTCTTGAACGTGGT 258
Query 259 GGTTC-CCCTTACGACGATCCAG-CGGCAACAGACATCGGAAACTTCGCAAACACACTCT 316
|| | ||| |||||| |||| | ||||||| || |||| |||||| || | ||||||||
Sbjct 259 GGCGCTCCC-TACGACAATCC-GACGGCAACGGATATCGAAAACTTTGCCACCACACTCT 316
Query 317 TGAACATAACTCCAAACTCATGGTCGCAGCTTTTCATCTCCGAAGACGGCGTTTTCAACT 376
|||| | | || || || |||||||||||||| ||||||| |||||||||| ||||
Sbjct 317 CAAACACATCACCCAATTCTTGGTCGCAGCTTTTTGTCTCCGAGGACGGCGTTTACAACA 376
Query 377 CACGCGCTCGTGTACTCGGTGGAGGCACAGTCATAAACGCAGGATTCTACTCACGTGCGG 436
| || || || || |||||||| ||| | || ||||||| || |||||| | |||||||
Sbjct 377 CTCGTGCACGCGTCCTCGGTGGTGGCTCGGTGTTAAACGCCGGGTTCTACACTCGTGCGG 436
Query 437 AAGAAGATTTCGTGGCGGAAGCA-GGA-TGGGAGAGAGACGAGGTCGAAGCGGCTTACGA 494
|||||| | ||| || || | || ||| |||| || || || ||||| ||||||||
Sbjct 437 GAGAAGAGTACGTTAAGG-AG-ACTGAGTGGAAGAGCGATGAAGTGGAAGCTGCTTACGA 494
Query 495 GTGGGTCGAGAAGAAAGTGGTTTTTGAACCACCGGTTAACAAATGGCAATCAGCGTTTCG 554
|||||||||||||||||||| ||| |||| ||||| | ||||||| | ||||||
Sbjct 495 GTGGGTCGAGAAGAAAGTGGCGTTTCAACCGCCGGTGATGGGATGGCAAACGGCGTTTAA 554
Query 555 AGATGGGCTTTTGGAAGCTGGTGTGACTCCATACAATGGTTTCACGTACGAACATATCGT 614
||||||||||||||| ||||||| | ||| ||||| ||||||||||| || ||||| |
Sbjct 555 AGATGGGCTTTTGGAGGCTGGTGAGTTTCCGTACAACGGTTTCACGTATGATCATATT-T 613
Query 615 -TGGGACTAA-ATTTGGTGGTACGATATTTGACCGGGATGGTCATAGACACACGGCGGC- 671
||||||||| || ||||||||||| |||||||| | |||||||||||||||||| ||
Sbjct 614 ATGGGACTAAGATC-GGTGGTACGATCTTTGACCGTGCTGGTCATAGACACACGGCCGCT 672
Query 672 GAATTTGTTGGAGTATGCTAATCCGAACATGATAGTTGTCTACTTGCATGCTTCTGTCCA 731
|| ||||||||| |||||||||||| || || ||||||||||||||||| ||||| ||
Sbjct 673 GA-TTTGTTGGAATATGCTAATCCGGGCAACATCGTTGTCTACTTGCATGCCTCTGTTCA 731
Query 732 TAAGATCCTCTTCACTATTAAAGGTAA--CCAGAGGCCCAAAGCATATGGGGTGATATTT 789
|||||||||||||| | ||||| | ||| ||||| |||||||| || |||||||||
Sbjct 732 CAAGATCCTCTTCACCACCAAAGG-ACGGCCA-AGGCCAAAAGCATACGGAGTGATATTT 789
Query 790 CTGGACGCAAATGGAGTG-TCCTACAAGGCAGAATTGGCAACGCAAGACTCGACAATGAG 848
| ||||| || || ||| | | |||||||||| || | | | |||| | | ||||||
Sbjct 790 CAAGACGCCAACGGTGTGATAC-ACAAGGCAGAGTTAG-A--G-AAGAAT-G-CAATGAA 842
Query 849 TGAGGTGATCTTATCAGCAGGTGCCATCGCGAGCCCTCAACTATTGATGCTAAGTGGTGT 908
||||||||| || || || || ||||| | |||||| ||| | |||||||| ||||| |
Sbjct 843 TGAGGTGATTTTGTCCGCGGGGGCCATTGGGAGCCCGCAATTGTTGATGCTGAGTGGCAT 902
Query 909 GGG-CCCTGCGGCTCATCTTGCAGC-CTATAG-AGTGAACCCGGTCATCGTAGATCAACC 965
|| ||| ||||||||||| |||| | | | | | |||| ||| || ||||||| ||
Sbjct 903 AGGTCCC-GCGGCTCATCTCACAGCTC-ACGGGATTAAACC-GGTGGTCTTAGATCATCC 959
Query 966 CATGGT-GGGCCAAGGGATGGGTGATAACCCGATGAAT-CCGGTTTTTATCCCTTCTCCT 1023
||||| |||| |||||||||| ||||| ||||||||| || | ||||| || ||||||
Sbjct 960 GATGGTAGGGC-AAGGGATGGGAGATAATCCGATGAATGCCA-TATTTATTCCGTCTCCT 1017
Query 1024 GAA-CCCGTAGAAGTGTCTCTTGTACAAGCCGTAGGAATCACCAAGTTTGGTAGTTACAT 1082
| ||||| || || ||||| |||||| ||| || ||||| ||||||| ||||||||
Sbjct 1018 -ACGCCCGTCGAGGTTTCTCTAATACAAGTCGTTGGGATCACAAAGTTTGAAAGTTACAT 1076
Query 1083 TGAAGGTGGAAGTGCCT-TAAGTCT-CTCT-ATTAGTTTGACCCGTAGCTTCTTCGATGG 1139
|||||| | ||||| | | | ||| |||| || |||| ||| ||||| || ||||||||
Sbjct 1077 TGAAGGAGCAAGTGG-TGTCA-TCTTCTCTTAT-AGTTGGACTCGTAGATTTTTCGATGG 1133
Query 1140 TGTTTTGAAT 1149
||||||||||
Sbjct 1134 TGTTTTGAAT 1143
> Ahg949744 jgi|Araly1|949744|scaffold_801631.1
Length=1626
Score = 298 bits (161), Expect = 1e-79
Identities = 320/395 (81%), Gaps = 18/395 (5%)
Strand=Plus/Plus
Query 125 GATTTATGAAAGATGCAACATTAGCACCAAAGTTAT-CTCACTTCGACTACATAATCATC 183
|||||||||||||||||||| ||||||| || |||| ||| ||||||||||||| |||||
Sbjct 18 GATTTATGAAAGATGCAACACTAGCACC-AACTTATGCTCGCTTCGACTACATAGTCATC 76
Query 184 GGAGGAGGAACCGCTGGATGTGCATTAGCCGCAACGCTCTCTCAAAACGC-AACCGTTCT 242
||||||||||| | || |||||||||||||||||||||||||||||||| ||| ||| |
Sbjct 77 GGAGGAGGAACTTCCGGTTGTGCATTAGCCGCAACGCTCTCTCAAAACGCTAAC-GTTTT 135
Query 243 AGTCCTCGAACGCGGAGGTTC-CCCTTACGACGATCCAGCGGCAACAGACATCGGAAACT 301
|| || ||||| || || || |||| | || |||| || || || || |||| ||| |
Sbjct 136 GGTTCTTGAACGAGGCGGCTCTCCCT-ATGATAATCCTGCCGCTACGGATATCGAAAAAT 194
Query 302 TCGCAAACACACTCTTGAACATAACTCCAAACTCATGGTCGCAGCTTTTCATCTCCGAAG 361
|||| ||||||||||| |||| || ||||| | ||||||||||||||||| ||||| |
Sbjct 195 TCGCCAACACACTCTTAAACACCACACCAAAAGCGTGGTCGCAGCTTTTCATATCCGAGG 254
Query 362 ACGGCGTTT-TCAACTCA-CGCGCTCGTGTACTCGGTGGAGGCACAGTCATAAACGCAGG 419
||||||||| | ||| || || || || || |||||||||| | | || | ||||| ||
Sbjct 255 ACGGCGTTTAT-AAC-CATCGTGCGCGCGTCCTCGGTGGAGACTCGGTGTTGAACGCTGG 312
Query 420 ATTCTACTCACGTGCGGAAGAAGATT-TCGTGGCGGAAG-CAG-GATGGGAGA-GAGACG 475
|| |||||||||||||| || ||| | |||| | ||| | | | ||||||| | || |
Sbjct 313 GTTTTACTCACGTGCGGAGGATTATTAT-GTGGAG-AAGTCTGAG-TGGGAGATG-GAGG 368
Query 476 AGGTCGAAGCGGCTTACGAGTGGGTCGAGAAGAAA 510
| || ||||| ||||||||||||||||||||||||
Sbjct 369 AAGTGGAAGCTGCTTACGAGTGGGTCGAGAAGAAA 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73628443585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5