BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56080.1
Length=2098
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938559 jgi|Araly1|938559|scaffold_502750.1 2881 0.0
Ahg348691 jgi|Araly1|348691|fgenesh1_pg.C_scaffold_5002083 353 2e-96
> Ahg938559 jgi|Araly1|938559|scaffold_502750.1
Length=1818
Score = 2881 bits (1560), Expect = 0.0
Identities = 1736/1822 (95%), Gaps = 7/1822 (0%)
Strand=Plus/Plus
Query 26 TTGTGTGGAAAAACG-AAGAAAGAATGATCAAGAACATCTTCCAAAGTCGGAAACTCTCA 84
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGTGTGG--AAACGTAAGAAAGAATGATCAAGAACATCTTCCAAAGTCGGAAACTCTCA 58
Query 85 GGTCTCTGTGTTCTCTCAATCTTGCTCGTATCAGTCACAATCCTCCTCTTGACCAATGAT 144
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 59 GGCCTCTGTGTTCTCTCAATCTTGCTCGTATCAGTCACAATCCTCCTCTTAACCAATGAC 118
Query 145 ACCATCGATCTCTTCCCTTACTTGTCTCTCCCTTATCTCCCTCGATCTTCTCTCTCCGTC 204
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
Sbjct 119 ACCATCGATCTCTTCCCTTACTTGTCTCTCTCTTATCTCCGTCGATCTTCTCTCTCCGAC 178
Query 205 ATCCCTACCTCCACGCCAATCTCGAGTCCCACCAACGACTCATCACCTCCTCTGGAATCA 264
|||||||||||||| |||||||||||||||||||||||||| || ||||||| |||| ||
Sbjct 179 ATCCCTACCTCCACACCAATCTCGAGTCCCACCAACGACTCGTCTCCTCCTCGGGAACCA 238
Query 265 CCGGTTAATCAAACCCGAGTCGATGATCATCCTG-ATGATCAAGGTTTGGAATTGGATTG 323
||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 239 CCGGTTAATCAGACCCGAGTCGATGATCATCC-GAATGATCAAGGTTTGGAATTGGATTG 297
Query 324 GCTTAAAGATGACAAACAATGGAACGTGAGTTTGAAGATAGATTGGAAGAGATGTGAGAG 383
||||||||| |||||| ||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 298 GCTTAAAGACGACAAAGAATGGAATGTGAGTTTGAAGATAGATTGGAGGAGATGTGAGAG 357
Query 384 TCCAGATTACATACCGTGTTTGGATAACACAAAAGCTATCAAGAAACTTAAGTCGAAGAG 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCCAGATTACATACCGTGTTTGGATAACACAAAAGCTATCAAGAAACTTAAGTCGAAGAG 417
Query 444 AAACATGGAGCACAGAGAGAGACATTGTCCTGAGCGTTCACCAAAATGTTTGGTTCCTTT 503
|||||||| |||||||||||||||||||| |||| | |||| |||||||||||||||||
Sbjct 418 GAACATGGAACACAGAGAGAGACATTGTCCCGAGCCTGCACCTAAATGTTTGGTTCCTTT 477
Query 504 GCCACAACATTACAAAGTTCCTCTTCCTTGGCCTCAGAGTAGAGACATGATTTGGTATGA 563
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 478 GCCACAACGTTACAAAGTTCCTCTTCCTTGGCCTCAGAGTAGGGACATGATTTGGTATGA 537
Query 564 TAATGTTCCTCATCCGAAACTTGTAGAATACAAGAAAGATCAGAATTGGGTTCGTAAATC 623
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 538 TAATGTTCCTCATCCGAAACTTGTTGAATATAAGAAAGATCAGAATTGGGTTCGTAAATC 597
Query 624 TGGACCTTTCTTTGTCTTCCCTGGAGGTGGAACTCAATTCAAAGACGGTGTTATTCACTA 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TGGACCTTTCTTTGTCTTCCCTGGAGGTGGAACTCAATTCAAAGACGGTGTTATTCACTA 657
Query 684 CATCAACTTCATACAAAAGACGTTACCTATTCTTGATTGGGGGAAGAAAGTAAGAGTGGT 743
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 658 CATCAACTTCATACAAAAGACGTTACCTGTTCTTGAATGGGGGAAGAAAGTAAGAGTGGT 717
Query 744 TCTAGATGTTGGTTGTGGTGTGGCTAGCTTTGGTGGGACTTTACTTGATAAGAACGTTAT 803
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 718 TCTTGATGTTGGTTGTGGTGTGGCTAGCTTTGGTGGGACTTTACTTGATAAAAACGTAAT 777
Query 804 CACAATGTCATTTGCTCCTAAAGACGAACACGAAGCTCAGATTCAGTTCGCACTGGAACG 863
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 778 CACAATGTCATTTGCTCCTAAAGACGAACACGAAGCTCAGATTCAGTTCGCACTAGAACG 837
Query 864 AGGGATTCCCGCTACACTCGCTGTTATTGGAACTCAAAAGCTTCCTTTTCCTGATAATGC 923
||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGGAATTCCCGCTACTCTGGCTGTTATTGGAACTCAAAAGCTTCCTTTTCCTGATAATGC 897
Query 924 TTACGACGTAATCCATTGCGCTAGATGCAGAGTCCATTGGCATGGATACGGTGGTAGACC 983
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TTATGACGTTATCCATTGCGCTAGATGCAGAGTCCATTGGCATGGATACGGTGGTAGACC 957
Query 984 ACTTTTGGAACTTAACCGGGTTCTAAGGCCTGGAGGGTTTTTTGTTTGGTCAGCTACACC 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ACTTTTGGAACTTAACCGGGTTCTAAGGCCTGGAGGGTTTTTTGTTTGGTCAGCTACACC 1017
Query 1044 AGTTTATCAACACGACGAAGGGCACCGTAATGTTTGGAAAACAATGGAGTCTTTGACTAC 1103
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GGTTTATCAACACGATGAAGGGCACCGTAATGTTTGGAAAACAATGGAGTCTTTGACTAC 1077
Query 1104 ATCAATGTGTTGGAAAGTTGTGGCTAGAACTCGATTCACTAAAGTTGGATTCGTGATTTA 1163
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1078 ATCAATGTGTTGGAAAGTTGTGGCTAGAACTCGATTCACTAAAGTTGGATTCGTTATTTA 1137
Query 1164 CCAGAAACCAGACTCAGATTCTTGTTATGAATCTCGTAAAAACAAAGATCCGCCTCTCTG 1223
|||||||||| ||||||||||||| |||||||| |||||| |||||||||||||||||||
Sbjct 1138 CCAGAAACCAAACTCAGATTCTTGCTATGAATCGCGTAAAGACAAAGATCCGCCTCTCTG 1197
Query 1224 CATTGAAGAAGAGACCAAGAAGAACAGTTCATGGTACACTCCTCTGCTTACTTGTCTACC 1283
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1198 CATCGAAGAAGAGACCAAGAAGAACAGTTCATGGTACACTCCTCTGCTCACCTGTCTACC 1257
Query 1284 GAAACTACCGGTCAGTCCAATAGGGAAATGGCCTTCCGGTTGGCCTGAGAGGTTAACGGA 1343
|||||||||||||||||||| || ||||||||||| ||||||||||| |||||||| ||
Sbjct 1258 AAAACTACCGGTCAGTCCAATCGGAAAATGGCCTTCGGGTTGGCCTGAAAGGTTAACTGA 1317
Query 1344 GACACCGGTTAGCCTCTTTAGAGAGCAGAGGAGTGAAGAGAGTTTCAGAGAAGACAGC-A 1402
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | |
Sbjct 1318 TACACCGGTTAGCCTCTTGAGAGAACAGAGGAGTGAAGAGAGTTTCAGAGAAGACA-CTA 1376
Query 1403 AACTCTGGTCTGGAGTCATGTCTAATATCTACCTATATAGTTTAGCTATAAACTGGACTA 1462
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
Sbjct 1377 AACTCTGGTCTGGAGTCATGTCAAATATCTACCTATATAGTCTAGCTATAAACTGGACCA 1436
Query 1463 GGATTCACAATGTTATGGACATGAACGCTGGTTATGGAGGATTTGCGGCTGCTCTTATAA 1522
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1437 GGATTCACAATGTTATGGACATGAACGCTGGTTATGGAGGATTTGCGACTGCTCTTATAA 1496
Query 1523 ACAAACCTCTGTGGGTGATGAATGTGATTCCTGTAGAAGGTGAAGACACGTTATCGACGA 1582
|||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1497 ACAAACCTCTCTGGGTGATGAATGTGATTCCTGTGGAAGGTGAAGACACATTATCGACGA 1556
Query 1583 TTTTTGATAGAGGTTTGATAGGGATATACCATGATTGGTGTGAGTCGTTCAATACATACC 1642
|||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||| |
Sbjct 1557 TTTTCGATAGAGGTTTGATCGGGATTTATCATGATTGGTGTGAGTCGTTCAATACATATC 1616
Query 1643 CAAGATCATATGATCTCTTGCACTCTAGTTTCCTTTTTACCAATCTTTCTCAAAGGTGTG 1702
||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||
Sbjct 1617 CAAGATCATATGATCTCTTGCACTCTAGTTTCCTTCTCACCAGTCTTTCTCAAAGGTGTG 1676
Query 1703 ATTTGATGGAGGTGGTAGTGGAAATAGACCGAATACTAAGACCAGGAGGGTATCTTGCGG 1762
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 1677 ATTTGATGGAGGTGGTAGTGGAAATAGACAGAATAGTAAGACCAGGAGGGTATCTTGTGG 1736
Query 1763 TGCAAGACACTGTCGAAATGCTAAAGAAGCTAAACCCTATTCTTTTATCACTCCGATGGT 1822
||||||||||||| |||||| | |||||| ||||||||||||||||||||||||||||||
Sbjct 1737 TGCAAGACACTGTTGAAATGTTGAAGAAGTTAAACCCTATTCTTTTATCACTCCGATGGT 1796
Query 1823 CAACGAATCTGTACAGAGGCAA 1844
|||||||| |||||||||||||
Sbjct 1797 CAACGAATATGTACAGAGGCAA 1818
> Ahg348691 jgi|Araly1|348691|fgenesh1_pg.C_scaffold_5002083
Length=399
Score = 353 bits (191), Expect = 2e-96
Identities = 213/224 (95%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 808 ATGTCATTTGCTCCTAAAGACGAACACGAAGCTCAGATTCAGTTCGCACTGGAACGAGGG 867
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1 ATGTCATTTGCTCCAAAAGACGAACACGAAGCTCAGATTCAGTTAGCACTAGAACGAGGA 60
Query 868 ATTCCCGCTACACTCGCTGTTATTGGAACTCAAAAGCTTCCTTTTCCTGATAATGCTTAC 927
||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 ATTCCCGCTACTCTGGCTGTTATTGGAACTCAAAAGCTTCCTTTTCCTGATAATGGTTAC 120
Query 928 GACGTAATCCATTGCGCTAGATGCAGAGTCCATTGGCATGGATACGGTGGTAGACCACTT 987
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACGTTATCCATTGCGCTAGATGCAGAGTCCATTGGCATGGATACGGTGGTAGACCACTT 180
Query 988 TTGGAACTTAACCGGGTTCTAAGGCCTGGAGGGTTTTTTGTTTG 1031
|||||||||||||||||||||| |||||||| |||||||||||
Sbjct 181 TTGGAACTTAACCGGGTTCTAAAGCCTGGAGTTTTTTTTGTTTG 224
Score = 283 bits (153), Expect = 3e-75
Identities = 168/175 (96%), Gaps = 1/175 (1%)
Strand=Plus/Plus
Query 1085 CAATGGAGTCTTTGACTACATCAATGTGTTGGAAAGTTGTGGCTAGAACTCGATTCACTA 1144
|||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 CAATGG-GTCATTGACCACATCAATGTGTTGGAAAGTTGTGGCTAGAACTCGATTCACTA 283
Query 1145 AAGTTGGATTCGTGATTTACCAGAAACCAGACTCAGATTCTTGTTATGAATCTCGTAAAA 1204
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 284 AAGTTGGATTCGTTATTTACCAGAAACCAGACTCAGATTCTTGTTATGAATCGCGTAAAG 343
Query 1205 ACAAAGATCCGCCTCTCTGCATTGAAGAAGAGACCAAGAAGAACAGTTCATGGTA 1259
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 344 ACAAAGATCCGCCTCTCTGCATCGAAGAAGAGACCAAGAAGAACAGTTCATGGTA 398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78922987640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5