BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G56090.1 Length=1134 Score E Sequences producing significant alignments: (Bits) Value Ahg486048 jgi|Araly1|486048|fgenesh2_kg.5__2040__AT3G56090.1 1395 0.0 Ahg940425 jgi|Araly1|940425|scaffold_600969.1 209 3e-53 Ahg940050 jgi|Araly1|940050|scaffold_600594.1 115 7e-25 Ahg339295 jgi|Araly1|339295|fgenesh1_pg.C_scaffold_2001394 110 3e-23 > Ahg486048 jgi|Araly1|486048|fgenesh2_kg.5__2040__AT3G56090.1 Length=1053 Score = 1395 bits (755), Expect = 0.0 Identities = 1001/1109 (90%), Gaps = 59/1109 (5%) Strand=Plus/Plus Query 7 ACAAAACCCTTTCTCCTCCAATTTCGTCGCACAC-AGGAAA-ACAAA-ATGCTTCTCAAA 63 |||||||||||||||||||||| |||| || ||| | |||| | ||| |||||||||||| Sbjct 1 ACAAAACCCTTTCTCCTCCAATCTCGTTGCTCACAAAGAAAGA-AAATATGCTTCTCAAA 59 Query 64 GCTGCTTCTACTTTCTCTCTATTGAACATTCATGGAGAGAAGAAAGACAtctctcctctc 123 |||||||||||||| ||||| |||||||||||||||||||||| ||||| | ||||| Sbjct 60 GCTGCTTCTACTTTTTCTCTCTTGAACATTCATGGAGAGAAGAGAGACA----T-CTCTC 114 Query 124 ttctcctcctcctcctccATTTCGTCTCCGGTTTCTTCTGGAAAATCCGGCAATCTCTCT 183 || || || | |||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 115 --CT-CT-CT--T-CTCCATTTCGTCTCCGATTTCTTCTGGAAAATCCGGGAATCTCTCG 167 Query 184 TTCCCTCTTCGTGCTTCCAAGAGTTCAACCACTACCACAAGCACGTTGAGCGGCGTTGTG 243 ||| ||||||||||||||||||| | | ||||||||||||||||||||||| Sbjct 168 TTCGCTCTTCGTGCTTCCAAGAG-T-------T----CAAGCACGTTGAGCGGCGTTGTG 215 Query 244 TTCGAGCCTTTCGAAGAGGTTAAGAAAGAGATGGATCTAGTTCCATCTGGTCAACAGCTT 303 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 216 TTCGAGCCTTTCGAAGAGGTTAAGAAGGAGATGGATCTAGTTCCATCTGGTCAACAGCTT 275 Query 304 TCTCTTGCTCGTCATTTGTACTCCCCTGAGTGCGAAGCCGCCGTCAATGAGCAGATCAAT 363 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 276 TCTCTTGCTCGTCATTTGTACTCCCCTGAGTGCGAAGCTGCCGTCAATGAGCAGATCAAT 335 Query 364 GTTGAGTATAACGTGTCGTATGTGTATCACGCTTTGTATGCATATTTCGATCGTGACAAC 423 ||||| || || ||||| ||||| ||||||||||||||||| |||||||||||||||||| Sbjct 336 GTTGAATACAATGTGTCCTATGTCTATCACGCTTTGTATGCGTATTTCGATCGTGACAAC 395 Query 424 GTTGCCCTCAAGGGTCTCGCCAAGTTTTTCAAGGAATCGAGTGTGGAAGAACGAGAGCAC 483 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 396 GTTGCCCTCAAGGGTCTCGCCAAGTTTTTCAAGGAATCCAGTGTGGAAGAACGCGAGCAC 455 Query 484 GCTGAGCTGTTGATGGAGTATCAGAACAAACGTGGTGGGAGGGTCAAGTTACAGCCCATG 543 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 456 GCTGAGCTGTTGATGGAGTATCAGAACAAACGTGGTGGGAGAGTCAAGTTACAGCCCATG 515 Query 544 GTGTTGCCTCAGTCTGAGTTTGATCATCCTGAGAAAGGAGATGCTCTCTATGCTATGGAG 603 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 516 GTGCTGCCTCAGTCTGAGTTTGATCATCCTGAGAAAGGAGATGCTCTCTATGCCATGGAG 575 Query 604 TTGGCTCTTTCATTGGAGAAACTAGTCAATGAAAAGCTCCTAAACCTGCACAGTGTGGCT 663 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 576 TTGGCTCTATCATTGGAGAAACTAGTCAATGAAAAGCTCCTAAACCTGCACAGTGTGGCT 635 Query 664 TCCAAGAACGATGATGTCCAGTTGGCAGATTTTATTGAGAGTGTGTTTCTGAACGAACAG 723 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 636 TCGAAGAACGATGATGTCCAGTTGGCAGATTTTATTGAGAGTGTGTTTCTGAATGAACAG 695 Query 724 GTGGAAGCCATTAAGAAAATCTCAGAATATGTTTCTCAACTTAGGAGACTTGGCAAAGGA 783 |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 696 GTGGAAGCGATTAAGAAAATCTCAGAATATGTTTCTCAACTTAGAAGACTCGGCAAAGGA 755 Query 784 CATGGAACATGGCATTTCGATCAGGAGCTTCTTGGTGCTGCTGCTTAATCTGAGTTTTAG 843 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 756 CATGGAACATGGCATTTCGATCAGGAGCTTCTTGGTGCTGCTGCTTAATC-GAGTTTTAG 814 Query 844 CTGTAATCTCGCAGTTTGGTTAACTTTTGAGTTATTTTGAGTATGAGATGTAACTTTTAA 903 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 815 CTGTACTCTCGCAGTTTGGTTAACTTTGGAGTTATTTTGAGTATGAGATGTAACTTTTGA 874 Query 904 GGTAGATTTGATCAATATCGATTCTGTTGTGAGAGAAAACAAGCTATTACGCTCCTTGGG 963 |||||| ||||| ||||||| |||||||||||||||||||||||||||| | || Sbjct 875 GGTAGACTTGATTAATATCGTTTCTGTTGTGAGAGAAAACAAGCTATTA---T--TT--- 926 Query 964 GTTAACTTTCTTTGTGTTTTCAGTATTATGGTTTTGTCCACTTCGTAATATCACTTTCCT 1023 | || | | | || ||||| || || || || | | ||||| |||||| Sbjct 927 -T-AAGTAT-TATG-GTTTT--GTCC-AT--TTC-GT--A------A-TATCAGTTTCCT 967 Query 1024 TTAGAACATTTCAAATCAGCAGTTGTTTTGAGGTGTAATGTAATGGTCACTGATATTTTC 1083 |||||||||||||||||||| || |||||| ||| ||||||||||| || ||||||| | Sbjct 968 TTAGAACATTTCAAATCAGCCGTGGTTTTG-GGTATAATGTAATGGGCATTGATATT--C 1024 Query 1084 TATTACCCCTGCATGAAAGTAGTATGTTT 1112 ||| ||||||||||||||||||||||||| Sbjct 1025 TATCACCCCTGCATGAAAGTAGTATGTTT 1053 > Ahg940425 jgi|Araly1|940425|scaffold_600969.1 Length=339 Score = 209 bits (113), Expect = 3e-53 Identities = 128/135 (95%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 462 GAGTGTGGAAGAACGAGAGCACGCTGAGCTGTTGATGGAGTATCAGAACAAACGTGGTGG 521 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 74 GAGTGTGGAAGAACGCGAGCACGCTGAGCTGTTGATGGAGTATCAGAACAAACGTGGTGG 133 Query 522 GAGGGTCAAGTTACAGCCCATGGTGTTGCCTCAGTCTGAGTTTGATCATCCTGAGAAAGG 581 ||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 134 GAGAGTCAAGTTACAGCCCATGGTGCTGCCACAGTCTGAGTTTGATCATCCTGAGAAAGG 193 Query 582 -AGATGCTCTCTATG 595 | ||| |||||||| Sbjct 194 TA-ATGATCTCTATG 207 > Ahg940050 jgi|Araly1|940050|scaffold_600594.1 Length=386 Score = 115 bits (62), Expect = 7e-25 Identities = 69/72 (96%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 721 CAGGTGGAAGCCATTAAGAAAATCTCAGAATATGTTTCTCAACTTAGGAGACTTGGCAAA 780 ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73 CAGGTGGAAGCGACTAAGAAAATCTCAGAATATGTTTCTCAACTTAGGAGACTTGGCAAA 132 Query 781 GGACATGG-AAC 791 |||||||| ||| Sbjct 133 GGACATGGTAAC 144 > Ahg339295 jgi|Araly1|339295|fgenesh1_pg.C_scaffold_2001394 Length=360 Score = 110 bits (59), Expect = 3e-23 Identities = 66/69 (96%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 724 GTGGAAGCCATTAAGAAAATCTCAGAATATGTTTCTCAACTTAGGAGACTTGGCAAAGGA 783 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73 GTGGAAGCGACTAAGAAAATCTCAGAATATGTTTCTCAACTTAGGAGACTTGGCAAAGGA 132 Query 784 CATGG-AAC 791 ||||| ||| Sbjct 133 CATGGTAAC 141 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42278314953 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5