BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G56170.1 Length=1440 Score E Sequences producing significant alignments: (Bits) Value Ahg486058 jgi|Araly1|486058|fgenesh2_kg.5__2050__AT3G56170.1 1901 0.0 Ahg483096 jgi|Araly1|483096|fgenesh2_kg.4__2156__AT2G40410.2 628 2e-179 Ahg940650 jgi|Araly1|940650|scaffold_601194.1 327 1e-88 > Ahg486058 jgi|Araly1|486058|fgenesh2_kg.5__2050__AT3G56170.1 Length=1146 Score = 1901 bits (1029), Expect = 0.0 Identities = 1110/1149 (97%), Gaps = 5/1149 (0%) Strand=Plus/Plus Query 294 GAAAATCAAATCTAAGAAATGGGTAACGCGATTAGGTTACTCCGGAAATGCTTGAATTCT 353 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 GAAAATCAAATCTAAGAAATGGGTAACGCGCTTAGGTTACTCCGGAAATGCTTGAATTCT 60 Query 354 CACGGCGTCTCCGCCTCTTCCGGCGGCGTCTCAGCTCTTTCTCGTGATCTCTTAAACTTC 413 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CACGGCGTCTCTGCCTCTTCCGGCGGCGTCTCAGCTCTTTCTCGTGATCTCTTAAACTTC 120 Query 414 GAGACCACTTCTCAGGTTCCTGAGAAGCTTGGGAGTTACGTTGTGTCTTCCCAAAAGGCT 473 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 GAGACCACTTCTCAGGTTCCGGAGAAGCTTGGGAGTTACGTTGTGTCTTCCCAAAAGGCT 180 Query 474 CAAGCAAACTGGTATAGAAAAATACTTGAGGCATGGAAGCAAGCTAAGCCTCGGCCTAAA 533 ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 181 CAAGCAAACTGGTATCGAAAAATACTTGAGGCATGGAAGCAAGCTAAGCCTCAGCCTAAA 240 Query 534 ACTCCTGAGGAAGCCTCCAGGCTTGTTATCGCGGCTCTAAAGAACCATCAAAAAGCAGAT 593 ||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||| Sbjct 241 ACTCCTGAGGAAGCCTCTAGGCTTGTTATCGCGACTCTAAAGAACCATCTAAAAGCAGAT 300 Query 594 GTTGAGGGACTTTTGTCTTTCTATGGACTACCTTCACCTCACAATCTCGTTGAGGTCCCT 653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GTTGAGGGACTTTTGTCTTTCTATGGACTACCTTCACCTCACAATCTCGTTGAGGTCCCT 360 Query 654 ACGGAAGCTCCTGTGTCTTTACCTAAAGGAGTTCGGTTTGAGCTTAACACGCTTCCGGTG 713 |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 361 ACGGAATCTCCTGTGTCTTTACCTAAAGGAGTTCGGTTTGAGCTTAAAACGCTTCCGGTG 420 Query 714 GATACAAAATCTGTGGCAGATGGTGATACTGTTACTGTGTATGTTAGTAGCAAAGACCCG 773 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 421 GATACAAAATCTGTGGCAGATGGAGATACCGTTACTGTGTATGTTAGTAGCAAAGACCCG 480 Query 774 CTTGTGTCATCTTCTCTTCCTAAGGACGTGAGTCTTGCAGCGGTTAAAAGAGCCAAAGCG 833 |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| Sbjct 481 CTTGTGTCATCTTCTCTTCCTAAGGAAGTCAGTCTTGCAGCAGTTAAAAGAGCCAAAGCG 540 Query 834 CGTGAGAAGAAGAATTATACTGAAGCAGATGCACTTCACAAGACGATCATAGCTTCTGGT 893 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 541 CGTGAGAAGAAGAATTATACTGAAGCAGATGCACTTCACAAGACTATCATAGCTTCTGGT 600 Query 894 TACAGGATGATAAGTTTTCAGAATGAGGAAGTGCTTGCTAAAAAGTTCAGAATTAGACTA 953 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TACAGGATGATAAGTTTTCAGAATGAGGAAGTGCTTGCTAAAAAGTTCAGAATTAGACTA 660 Query 954 AGCGGAATAGATTCACCGGAGAGCAAAATGCCGTATGGAAAAGAGGCGCATGATGAGCTA 1013 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 AGCGGAATAGATTCACCGGAGAGCAAAATGCCGTATGGAAAAGAGGCGCATGATGAGCTA 720 Query 1014 CTCAAGATGGTTGAAGGGAAATGCTTGAAGGTGTTAGTATATACAGAGGATCGTTATGGA 1073 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CTCAAGATGGTTGAAGGGAAATGCTTGAAGGTGTTAGTATATACAGAGGATCGTTATGGA 780 Query 1074 AGATGTGTAGGAGATATATACTGCAATGGAAAATTTGTACAGGAAGTAATGCTAAAGAAA 1133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 AGATGTGTAGGAGATATATACTGCAATGGAAAATTTGTACAGGAAGTAATGCTAAAGAAA 840 Query 1134 GGTCTTGCTTGGCATTATGTAGCCTATGACAAGCGTGCAGAGCTCGCAAAGTGGGAAAAT 1193 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 841 GGTCTTGCTTGGCATTATGTAGCTTACGACAAGCGTGCAGAGCTCGCAAAGTGGGAAAAT 900 Query 1194 GAGGCTAGGCAAAAGCGCGTTGGCTTGTGGGCATCTTCTAATCCAGAGAAGCCATGGGAG 1253 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 901 GAGGCTAGGCAAAAGCGTATTGGCTTGTGGGCATCTTCTAATCCAGAGAAGCCATGGGAG 960 Query 1254 TGGAGAAAGAACAAACGTGGAGGCAATTAATGATAACAAAACCAATAAAAACAACAA--T 1311 ||||||||||||||||||| |||||| |||| ||||||||||||| ||||| || || | Sbjct 961 TGGAGAAAGAACAAACGTGAAGGCAAGTAATTATAACAAAACCAAAAAAAAAAAAAAAAT 1020 Query 1312 ACAATACTATTCGATTATATGATTATTGTGAATTAAAGAACTTGTGATCTGTTGTTGTAA 1371 |||||||||||||||||| |||||||||||||| |||| |||||||||||||||| | Sbjct 1021 ACAATACTATTCGATTAT--GATTATTGTGAATTGT-GAACCTGTGATCTGTTGTTGTTA 1077 Query 1372 TTGTAAGAGAAGTATGTATATGTTTTATGTATTGACAAGTAtttttttGGCAATAGAGAA 1431 ||||||||| | |||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 1078 TTGTAAGAGCACTATGTAAATGTTTTATGTATTGATAAGTATTTTTTTGGCAATAGAGAA 1137 Query 1432 TTTCTCTTT 1440 ||||||||| Sbjct 1138 TTTCTCTTT 1146 > Ahg483096 jgi|Araly1|483096|fgenesh2_kg.4__2156__AT2G40410.2 Length=1082 Score = 628 bits (340), Expect = 2e-179 Identities = 747/940 (79%), Gaps = 42/940 (4%) Strand=Plus/Plus Query 352 CTCACGGCGTCTCCGCCTCTTCCGGCGGCGTCTCAGCTCTTTCTCGTGATCTCTTAAACT 411 ||||||||||||||||| | ||| || || |||||||| ||| || || || |||| Sbjct 142 CTCACGGCGTCTCCGCCGCCACCGTTGGTGTTTCAGCTCTCGCTCACGACCTTTTCAACT 201 Query 412 TCGAGACCACTTCTCAGGTTCCTG-AGAAGCTTGGGAGTTACGTTGTGTCTTCCCA-AAA 469 |||||| |||||| |||||||||| || ||||||||| || ||| ||| | | | ||| Sbjct 202 TCGAGATCACTTCCCAGGTTCCTGAAG-GGCTTGGGAGGTATGTTCAGTCGT-CTAGAAA 259 Query 470 GGCTCAAGCAAACTGGTATAGAAAAATACTTGAGGCATGGAAGCAAGCTAAGCCTCGGCC 529 |||||||||||||||||| |||||||||||||||||||||||||||| || |||| || Sbjct 260 AGCTCAAGCAAACTGGTATCGAAAAATACTTGAGGCATGGAAGCAAGCAAAACCTCCACC 319 Query 530 TA-AAACTCCTGAGGAAGCCTCCAGGCTTGTTATCGCG-GCTC-TAAAGAA-CCATCAAA 585 | | || | |||||||| || |||||||| | | | || |||| || |||| | Sbjct 320 -ACAGACAGCAGAGGAAGCTTCTAGGCTTGTCA-C-TGATATCTTAAA-AAGGAATCAGA 375 Query 586 AAGCAGATGTTGAGGGACTTTTGTCTTTCTATGGACTACCTTCACCTCACAATCTCGTTG 645 |||| |||||||||||||||||||||||||||||||| |||| |||| | ||| |||| Sbjct 376 AAGCTGATGTTGAGGGACTTTTGTCTTTCTATGGACTCCCTTTGTCTCATACTCTAGTTG 435 Query 646 AGGTCCCTACGGAAGCTCCTGTGTCTT-TA--CCTAAAGGAGTTCGGTTT-GAGCTT-AA 700 | ||| || |||||||||||||||| | ||| |||| |||| ||| || || || Sbjct 436 AAGTCTCTGTTGAAGCTCCTGTGTCTTCTTTGCCTGAAGGGGTTCT-TTTCGAATTTCAA 494 Query 701 CACGCTTCCGGTGGATACAAAATCTGTGGCAGATGGTGATACTGTTACTGTGTATGTTAG 760 || |||||||||||| ||||| ||||||||||||| || || | || |||||||| || Sbjct 495 -ACACTTCCGGTGGATCCAAAAGCTGTGGCAGATGGAGACACCATCACAGTGTATGTCAG 553 Query 761 TAGCAA-AGACCCGCTTGTGTCATCTTCTCTTCCTAAGG-ACGTGAGTCTTGCAGCGGTT 818 || | ||| ||| | |||||||||| | |||| |||| | || | ||||||||||||| Sbjct 554 TA-CTTCAGAGCCGGTAGTGTCATCTTATGTTCC-AAGGGAAGTCAATCTTGCAGCGGTT 611 Query 819 AAAAGAGCCAAAGCGCGTGAGAAGAAGAATTATACTGAAGCAGATGCACTTCAC-AAGAC 877 ||||||| ||||| |||||||||| |||||| | ||||||| | ||||||| || | Sbjct 612 CAAAGAGCAAAAGCACGTGAGAAGAGGAATTACCCAAAAGCAGACGAACTTCACCAAAA- 670 Query 878 GATCATAGCTTCTGGTTACAGGATGA-TAAGTTTTCAGAATGAGGAAGTGCTTGCTAA-A 935 |||||| | ||||||||||||| | | ||| | || |||||||||||||||||||| | Sbjct 671 GATCATTGATTCTGGTTACAGGGT-ACTAACTATTGAGAATGAGGAAGTGCTTGCTCGCA 729 Query 936 AAGTTCAGAATTAGACTAAGCGGAATAGATTCACCGGAGAGCAAAATGCCGTATGGAAAA 995 || ||||||||||||||||| ||||||||| |||| |||||| ||||||| | ||| ||| Sbjct 730 AA-TTCAGAATTAGACTAAGGGGAATAGATGCACCAGAGAGCCAAATGCCATTTGGGAAA 788 Query 996 GAGGCGCATGATGAGCTACTCAAGATGGTTG-AAGGGAAATGCTTGAAGGTGTTAGTATA 1054 ||||| || | | ||| || ||||| |||| |||| ||| ||||||| |||||||| || Sbjct 789 GAGGCACAACAAGGGCTCCTTAAGATTGTTGGAAGGAAAA-GCTTGAAAGTGTTAGTTTA 847 Query 1055 TACAGAGGATCGTTATGGAAGATGTGTAGGAGATATATACTGCAATGGAAAATTTGTACA 1114 | ||| |||| ||||| |||| |||| ||| ||||||||||||| | ||||| || Sbjct 848 TGGAGAAGATCAATATGGGCGATGCGTAGCTGATTTATACTGCAATGGGATTTTTGTCCA 907 Query 1115 GGAAGTAATGCTAAAGAAAGGTCTTGCTTGGCATTA-TGTAGCCTATGACAAGCGTGCAG 1173 ||| | ||||||||||||||| ||||| |||||||| | |||| ||||||||||| | | Sbjct 908 GGAGGCAATGCTAAAGAAAGGGCTTGCATGGCATTACT-TAGCTTATGACAAGCGCCCGG 966 Query 1174 AGCTCGCAAAG------T---GGGAAAATGAGGCTAGGCAAAAGCGCGTTGGCTTGTGGG 1224 ||||||||| | ||||||| ||||| ||||| ||||| |||||||||||| Sbjct 967 TTCTCGCAAAGGCAAGATTATGGGAAAAGGAGGCAAGGCAGAAGCGTATTGGCTTGTGGG 1026 Query 1225 CATCTTCTAATCCAGAGAAGCCATGGGAGTGGAGAAAGAA 1264 | ||||| |||||||||||||||||||| ||||||||||| Sbjct 1027 CTTCTTCAAATCCAGAGAAGCCATGGGACTGGAGAAAGAA 1066 > Ahg940650 jgi|Araly1|940650|scaffold_601194.1 Length=508 Score = 327 bits (177), Expect = 1e-88 Identities = 198/208 (95%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 960 ATAGATTCACCGGAGAGCAAAATGCCGTATGGAAAAGAGGCGCATGATGAGCTACTCAAG 1019 |||||||||||||||||||||||| |||||||||||||||| || |||||||||||||| Sbjct 258 ATAGATTCACCGGAGAGCAAAATGTCGTATGGAAAAGAGGCACACGATGAGCTACTCAAT 317 Query 1020 ATGGTTGAAGGGAAATGCTTGAAGGTGTTAGTATATACAGAGGATCGTTATGGAAGATGT 1079 |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| || Sbjct 318 ATGGTTGAAGGGAAATGCTTGAAGATGTTAGTTTATACAGAGGATCGTTATGGAAGACGT 377 Query 1080 GTAGGAGATATATACTGCAATGGAAAATTTGTACAGGAAGTAATGCTAAAGAAAGGTCTT 1139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 378 GTAGGAGATATATACTGCAATGGAAAATTTGTACAGGAAGTAATGCTAAAGAAAGGTCTT 437 Query 1140 G-CTTGGCATTATGTAGCCTATGACAAG 1166 | || |||||||||||||||| |||||| Sbjct 438 GTCT-GGCATTATGTAGCCTACGACAAG 464 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53859606430 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5