BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G56290.1 Length=753 Score E Sequences producing significant alignments: (Bits) Value Ahg938584 jgi|Araly1|938584|scaffold_502775.1 817 0.0 > Ahg938584 jgi|Araly1|938584|scaffold_502775.1 Length=559 Score = 817 bits (442), Expect = 0.0 Identities = 524/562 (93%), Gaps = 12/562 (2%) Strand=Plus/Plus Query 14 GTGAAAACCATAAGATGGGTTTTAGAGCACTGCCTCTTCAACACAGCAGTGGGTTCATCT 73 ||||||| || ||||||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 7 GTGAAAATCACAAGATGGGTCTTAGAGCACTGCCAATTCAACACAACAGTGGATTCCTCT 66 Query 74 CCACGACCAAAGTATCC-ATCTCAAGAACCTCGCCCAGGATTT-TCCGGAACCCTAGATG 131 | ||||||||||| || ||||||||||||||||| | ||||| ||||||||||||||| Sbjct 67 CTACGACCAAAGT-CCCGATCTCAAGAACCTCGCCGA-GATTTAGCCGGAACCCTAGATG 124 Query 132 GGTCGTTGTCTCAGCAAAGCAAGAGAAAGATGAGGATAAGAAGAAGAATGAAGAGGAGAC 191 ||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| Sbjct 125 GGTCGTTGTCTCAGCAAAGCAAGAGAAAGAT---GATGAGAAGAAGAAGGAAGAGGAGAC 181 Query 192 TTCGTTGTTTACTCAATTAACGGATGCCTTGGACTTCTCACAAGTTCGATCGGAGAAAGA 251 |||||||||||| ||||||| ||||| |||||||||||||||||||| ||||||||||| Sbjct 182 TTCGTTGTTTACGAAATTAACTGATGCGTTGGACTTCTCACAAGTTCGGTCGGAGAAAGA 241 Query 252 CGCTGAGCTTCTCTACGAGGCTCGAGAAGCCACCAAATCTGGTCGCAAGATGACCCAAGA 311 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 242 CGCTGAGCTTCTCTACGAGGCTCGAGAAGCCACCAAATCTGGTGGCAAGATGACCCAAGA 301 Query 312 ACAGTATGGGGCATTGAGGAGAAAAATCGGAGGAACATACAAGGACTTTTTTAAATCCTA 371 ||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct 302 ACAGTATGGGGCATTGAGGAGAAAAATCGGAGGGACGTACAAGGACTTCTTTAAATCCTA 361 Query 372 CGTTGAAGTGGATGGGCAATATGTGG-AGGAGGGATGGGTGGACAAAACATGTAAGATAT 430 |||||||||||||||| ||||||||| || |||| ||||||||||||||||||||||||| Sbjct 362 CGTTGAAGTGGATGGGAAATATGTGGAAGAAGGG-TGGGTGGACAAAACATGTAAGATAT 420 Query 431 GCAAAAAGGACACAAAGGGTGAGGCAAGACAAGTGGACAAGTTAGGGAGATATGCTCATG 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GCAAAAAGGACACAAAGGGTGAGGCAAGACAAGTGGACAAGTTAGGGAGATATGCTCATG 480 Query 491 TCTCTTGTCTTCAAAATCCTCCCTCTGGAAATTTCTTCACCAGACTCTTCTCTAGATGAT 550 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 481 TCTCTTGTCTTCAAAATCCTCCCTCTGGAAATTTCTTCACCAGGCTCTTCTCTAGATGAT 540 Query 551 GATGATCAATTTCCCAAATCAT 572 ||| |||||||||||||||| Sbjct 541 GAT---CAATTTCCCAAATCAT 559 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27753483576 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5