BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56360.1
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938591 jgi|Araly1|938591|scaffold_502782.1 1110 0.0
> Ahg938591 jgi|Araly1|938591|scaffold_502782.1
Length=746
Score = 1110 bits (601), Expect = 0.0
Identities = 683/724 (94%), Gaps = 0/724 (0%)
Strand=Plus/Plus
Query 139 TTGAATCTTCCGGTAGGCGAAGATGGCGACGTCTGCGAGGATTTGTTGCGGAGGAGGAAG 198
|||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct 1 TTGAATCTTCCGGTAGTCGGGGATGGCGGCGTCTGCGAGGATTTGTTGCGGAGGAGGAAG 60
Query 199 TGCATGCGCCGTTCGTTGTGATCGTCGCACGTTAAATTTGAATTCTCGATCGTCATGTGT 258
|||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 61 TGCATGTGCCGTTCGTTGTGATCGTCGTACGTTGAATTTGAATTCTCGATCGTCGTGTGT 120
Query 259 TGTTCCAGTGACGAATCGACGGAATATGTGTGCGATCGGGAAGATTTCGATGTCGATGGA 318
||| || |||||||||||||||||| ||||| |||||||||| ||||||||||||||||
Sbjct 121 TGTCCCGGTGACGAATCGACGGAATCGGTGTGAGATCGGGAAGGTTTCGATGTCGATGGA 180
Query 319 GGATTTGTCACCACCGTCTGCGGCGGTGAAGATTGAAAGGATCGGTGGAAGGAAACGCGG 378
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 181 TGATTTGACACCACCGTCTGCGGCGGTGAAGATTGAAAGGATCGGTGAAAGGAAACGTGG 240
Query 379 TGGATCTGTTGTGTCGAGGGAGAAGCTAGATGTGTGGTTGAGAGATTCGGTGGTTGAGAT 438
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 TGGATCTGTTGTGTCGAGGGAGAAGCTTGATGTGTGGTTGAGAGATTCGGTGGTTGAGAT 300
Query 439 CGTGAAGAATCTTAGAGAGTCGCCGTTATTGATGCATTTATACGCGGAGGCTAATGGTGG 498
||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGTGAAGAATCTTCGAGAATCTCCGTTATTGATGCATTTATACGCGGAGGCTAATGGTGG 360
Query 499 TTTGACGACGACGGCAACGAATCCAAAGGCGGAGGATTGGACAGAGATGGAAGGAAAGTG 558
|||||||||| ||||||||||||| |||||||||||||| | |||||||| ||||||||
Sbjct 361 TTTGACGACGTCGGCAACGAATCCTGAGGCGGAGGATTGGCCGGAGATGGAGGGAAAGTG 420
Query 559 GGGTAGAGGAGAAGAGAGGACGCCGGAAGGAGTTATATTGGTGGAGAAGCTCGCAGACGG 618
|| |||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct 421 GGATAGAGGAGAAGAGAGGACGCCGGAAGGAGTTATATTCGTGGAGAAGCTCTCTGACGG 480
Query 619 TGACATAGCAGATGATGATGATCACGATGGTGGCGCGTGTGGGGAAGATACAAGCGCGTG 678
||| |||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 481 TGATGTAGCGGATGATGATGATCACGATGGTGGCGCGTGTGGAGAAGATACGAGCGCGTG 540
Query 679 GGGGATTGTGGCGCAAGGAAGAGGATCGGATACTGGGCCGGTTTGTTATCTATTGAAAAC 738
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 541 GGGGATTGTGGCGCAAGGAAGAGGAACGGATAGTGGGCCGGTTTGTTATCTATTGAAAAC 600
Query 739 GACCCGGGTCCGGTCGGGTATGGGTACGGTTTGCACCCATTTCTGTTTGGTTAAGGTCAA 798
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GACCCGGGTCGGGTCGGGTATGGGTACGGTTTGCACCCATTTCTGTTTGGTTAAGGTCAA 660
Query 799 GAGTTTTAGGGAAACGGCTATGTCACAGTTGAATAATTCGTGGTTGGTGCAGACTGGTCA 858
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 661 GAGTTTTAGGGAAACGGCTATGTCACAGTTGAATAATTCATGGTTGGTGCAGACTGGTCA 720
Query 859 ATGA 862
||||
Sbjct 721 ATGA 724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41477733696
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5