BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56650.1
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938626 jgi|Araly1|938626|scaffold_502817.1 1264 0.0
> Ahg938626 jgi|Araly1|938626|scaffold_502817.1
Length=832
Score = 1264 bits (684), Expect = 0.0
Identities = 780/827 (94%), Gaps = 4/827 (0%)
Strand=Plus/Plus
Query 36 CTTTGTATTCCGAC-aaaaaaaTGGCGACTGCGTCTCTAGTTCCGACATCTAAAATCTTC 94
|||||||||||||| ||||||||||||||||| |||||||||| |||||||||| |||||
Sbjct 1 CTTTGTATTCCGACAAAAAAAATGGCGACTGCATCTCTAGTTCTGACATCTAAAGTCTTC 60
Query 95 TCTGTCTCTCCGAAATCCTCAGCTTCGATTAAAGCAAGGAGC-AGAGTAGTTGTTGCATC 153
||||||||| |||||| |||||||| |||||||||||||| | | ||||||||||||||
Sbjct 61 TCTGTCTCTTCGAAATGCTCAGCTTTGATTAAAGCAAGGA-CTGGCGTAGTTGTTGCATC 119
Query 154 GTCGCAACAACAACAACAACCAAGAAGGAGAGAGCTTCTGCTGAAATCGGCGGTGGCGAT 213
| ||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 120 GGCGCAACAGCAACAACAGCCAAGAAGGAGAGAGCTGCTGCTGAAATCGGCGGTTGCGAT 179
Query 214 TCCGGCGATTCTGCAATTGAAGGAAGCTCCGATATCAGCGGCGCGTGAGGTGGAAGTTGG 273
||||||||||||||||||||| |||||||||| ||| | ||||||||| |||||||||||
Sbjct 180 TCCGGCGATTCTGCAATTGAATGAAGCTCCGAAATCGGAGGCGCGTGAAGTGGAAGTTGG 239
Query 274 ATCGTACTTACCTCTGTCTCCGTCTGATCCTTCTTTCGTCCTGTTTAAAGCCAAACCTTC 333
||| |||||||||| ||| |||||||||||||| |||||||| || ||||||||||||||
Sbjct 240 ATCATACTTACCTCCGTCGCCGTCTGATCCTTCCTTCGTCCTCTTCAAAGCCAAACCTTC 299
Query 334 AGATACTCCTGCTCTCCGCGCAGGAAATGTTCAGCCCTATCAGTTTGTTCTACCGCCGAA 393
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CGATACTCCTGCTCTCCGCGCAGGAAATGTTCAGCCCTATCAGTTTGTTCTACCGCCGAA 359
Query 394 TTGGAAACAGTTGCGAATAGCCAATATTTTGTCAGGTAATTACTGTCAACCGAAATGTGC 453
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 360 TTGGAAACAGTTGCGAATAGCCAACATTTTGTCAGGTAATTACTGTCAACCGAAATGCGC 419
Query 454 AGAGCCATGGATCGAAGTGAAGTTTGAGAACGAGAAGCAAGGCAAGGTTCAAGTAGTTGC 513
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 AGAGCCATGGATCGAAGTGAAGTTTGAGAACGAGAAGCAAGGCAAGGTTCAAGTGGTTGC 479
Query 514 ATCTCCTTTAATCCGCTTAACCAACAAACCAAATGCAACTATTGAAGATCTCGGTGAGCC 573
||||||||| ||||||||||| ||||||||||||||||| ||||| ||| ||||||||||
Sbjct 480 ATCTCCTTTGATCCGCTTAACTAACAAACCAAATGCAACCATTGAGGATATCGGTGAGCC 539
Query 574 TGAGAAAGTGATTGCTTCTCTTGGTCCTTTTGTCACCGGAAACTCTTATGACTCTGATGA 633
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 TGAGAAAGTGATTGCTTCTCTTGGTCCCTTTGTCACCGGAAACTCTTATGACTCTGATGA 599
Query 634 ACTTTTGAAGACTTCAATCGAAAAAATTGGAGATCAAACGTACTATAAGTATGTGTTGGA 693
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 ACTTTTGAAGACTTCAATCGAAAAGATTGGAGATCAAACGTACTATAAGTATGTGTTGGA 659
Query 694 GACGCCATTTGCGCTCACGGGAAGTCACAATCTTGCAAAAGCGACAGCAAAGGGAAGCAC 753
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 660 GACGCCATTTGCGCTCACGGGAAGTCACAATCTTGCAAAAGCGACAGCAAAGGGAAACAC 719
Query 754 GGTTGTTTTGTTTGTTGTAAGTGCTACTGAAAAGCAATGGCAGAGCTCACAGAAGACTCT 813
|| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGTGGTTCTGTTTGTTGTGAGTGCTACTGAAAAGCAATGGCAGAGCTCACAGAAGACTCT 779
Query 814 TGAAGCCATTCTTGATTCTTTTCAACTGTAAATCA-GAGTTTTTGTT 859
|||||||||||||||||||||||||||||||||| || || |||||
Sbjct 780 TGAAGCCATTCTTGATTCTTTTCAACTGTAAATCCTGAATTATTGTT 826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39533464929
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5