BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56680.1
Length=1550
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486108 jgi|Araly1|486108|fgenesh2_kg.5__2100__AT3G56680.1 2200 0.0
> Ahg486108 jgi|Araly1|486108|fgenesh2_kg.5__2100__AT3G56680.1
Length=1519
Score = 2200 bits (1191), Expect = 0.0
Identities = 1437/1549 (93%), Gaps = 43/1549 (3%)
Strand=Plus/Plus
Query 1 AAAGAAGGAAAAAATATAAAGTTTCCTTTCCCTCTCGTTCGTTGGCTTTGCCTTCCCGAG 60
||||||||||||||||||||||||||||||||||||| | || |||||| |||||||||
Sbjct 1 AAAGAAGGAAAAAATATAAAGTTTCCTTTCCCTCTCG-T--TT-GCTTTGGCTTCCCGAG 56
Query 61 AGAGAAAGATAAGATTTGGTTTTGCATTCCTCTTCTCTCTCGCCGCTCTCAATATGCTTC 120
||||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
Sbjct 57 AGAGAGAGATAAGATTTGG-TTAGCATTCCTCTTGTCTCTCGCCGCTCTCAATATGCTCC 115
Query 121 GATTTCTATTCTCCTCTTCCTCTTGATTT-T-GTCTTCTTCTCTTTGCTGCGGAGAGATT 178
|||||| |||||| ||||||||||||||| | |||||||||||||||||| | |||
Sbjct 116 GATTTCGATTCTCATCTTCCTCTTGATTTGTCTTCTTCTTCTCTTTGCTGC-G-GAG--- 170
Query 179 AAGAAACCCAAGGGTTTTAAGCAAGAGACGCGGCGAGGAAGCTATCCAGAACTCTCT-GA 237
|| | ||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 171 -AG-------A----TTTAAGCAAGAGACGCGGCGAGGAAGCTATCCATAACTCTCTAGA 218
Query 238 AACATCCATTCCTTTTTCTCATGGACGTAGTGTTGCCGGAAACTGCCGT-GGTAACCGGT 296
|||||||||||| |||||||||||||| || |||||||||||| ||||| ||| ||||||
Sbjct 219 AACATCCATTCCCTTTTCTCATGGACGCAGCGTTGCCGGAAACCGCCGTCGGT-ACCGGT 277
Query 297 GGT-TCGGTTATCGGAGATTA-TGGATTTAATGTGGATCCTTTTCTCGTTGAGGCGTTGC 354
||| | |||||||||||| || |||||| ||||| ||||||||||| |||||||| ||||
Sbjct 278 GGTAT-GGTTATCGGAGA-TAGTGGATTGAATGTAGATCCTTTTCTGGTTGAGGCTTTGC 335
Query 355 ACAACTCTCGCCATCGTCTCACGATTTTGCGGATGGAACTTGATGTTCAAAGGTTGTTGC 414
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 AGAACTCTCGCCATCGTCTCACGATTTTGCGGATGGAACTTGATGTTCAAAGGTTGTTGC 395
Query 415 AGAACCCTGAACAGCAGCAGTTTGAGTTCCAGCATTTTCCTACTTCGTATCTTCGTCTTG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 AGAACCCTGAACAGCAGCAGTTTGAGTTCCAGCATTTTCCTACTTCGTATCTTCGTCTTG 455
Query 475 CAGCCCATCGTGTTGCTAACCATTATGGGCTAGCTACAGCTGTCCAAGAGAGTGGTGCTG 534
|||||||||||||||||||||||||||| ||||||||||| || || || |||||||| |
Sbjct 456 CAGCCCATCGTGTTGCTAACCATTATGGACTAGCTACAGCGGTTCAGGAAAGTGGTGCAG 515
Query 535 ATGGAAATGAAAACAGAATCCTTGTGACGAAAACTACAGAGAGCAAATTTCCTGCTGTTC 594
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||
Sbjct 516 ATGGAAATGAAAACAGAATCCTTGTGACAAAAACTACAGAGAGCAAATTCCCTGCTCTTC 575
Query 595 GGTTGTCTGAAATCCCGGTGGCTAAACAATCAGAAAATGGTAAGTTTGAGAGCAGGAAAG 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 576 GGTTGTCTGAAATCCCGGTGGCTAAACAATCAGAAAATGGTAAGTTTGAGAGCATGAAAG 635
Query 655 TTTCCATCAAGACTCGACCTTCTAAAGGATCTGGATATGGCGCTGGTGATCTGGAAAAGA 714
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 636 TTTCCATCAAGACTCGACCTTCTAAAGGATCTGGATATGGCGCTGGTGAACTGGACAAGA 695
Query 715 ATCGTGGTCCTCTTAGAAGTGTTGAAGAGAGGAAAGAAGAGTATGACAAGG-CTCGAGAA 773
| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 696 AACGTGGTCCTCTTAGAAGTGTTGAAGAGAGGAAAGAAGAGTATGA-AAGGGCTCGAGAA 754
Query 774 CGCATATTCAGTGGTCTTACTGGTCTTAGTTGTGATGACTCTTCATCTGAAACTCAGGTG 833
|||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 755 CGCATATTTAGTGGTCTTACAGGTCTTAATTGTGATGACTCTTCATCTGAAACTCAGGTG 814
Query 834 TATGAGAGGAATGCAAGTCTT---AGCAGAGATGACAAGCAAGTATCTAAGAATGCTTAC 890
|||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 815 TATGGGAGGAATGCAAGTCTTCTTAGCAGAGATGACAAGCAAGTTTCTAAGAATGCTTAC 874
Query 891 GTTGAGGTCAAGAAGAACTTAAGCATCAGGGAAAGTGGTCCAACATCTCGTGTTGCAATA 950
||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 875 GTTGAGGGCAAGAAGAACTTAAGCCTCAGGGAAAGCGGTCCAACATCTCGTGTTGCAATA 934
Query 951 TTTAGAGACAGAGAGAAAGATCGGTTTGACCCTGATTATGACCGCAGACACCAAAGGTAC 1010
||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 935 TTTAGAGACAGGGAGAAAGATCGGTTTGACCCTGATTATGACCGCAGAAACGAAAGGTAT 994
Query 1011 ATTAGGAGCCTTCCGGTGAATCAGAACTTCAATCTACCACCCTTCAACATTCAGCAAATA 1070
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 995 ATTAGGAGCCTTCCGGTGAATCAGAACTTCAATTTACCACCCTTCAACATTCAGCAAATA 1054
Query 1071 CCGACACCATACTACGAAATGGGATTCACTGGATATAACCAAATTCCAAGTC-CTCCTGC 1129
|||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1055 CCGACACCATACTATGAAATGGGATTCACTGGATATAACCAAATTCCAAG-CACTCCTGC 1113
Query 1130 TCCTCTTGGCTTCGGACCACATCCTAGCTCAATCATGAGTCCCTATGGCACCACAATGGA 1189
||||||||||||||| |||| ||| ||||| ||||||||||||||||||| |||||||||
Sbjct 1114 TCCTCTTGGCTTCGGGCCACCTCCAAGCTCTATCATGAGTCCCTATGGCAGCACAATGGA 1173
Query 1190 TGCAATGTATATGCATTGGCCTAATGCAGCTATGATGTATGCTCATCCGTATGAGCAGTT 1249
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1174 TGCAATGTATATGCATTGGCCTAATACAGCTATGATGTATGCTCATCCGTATGAGCAGTT 1233
Query 1250 CAGGAATGGCTCTCTTCAGGCACAGTTCGTTCAACAACCCTTGAGCTTCGACTACATGCA 1309
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1234 TAGGAATGGCTCTCTTCAGGCACAGTTCGTTCAACAACCCTTGAGCTTCGACTGTATGCA 1293
Query 1310 GAACCGCTAGGTGCTTGCCTCTTTGTCGATCTTTATCTCTGTTTACCAtttttttttGTA 1369
||||||||||||||||| ||| ||||| |||||||||||||||||||| |||| || |||
Sbjct 1294 GAACCGCTAGGTGCTTGTCTCGTTGTCAATCTTTATCTCTGTTTACCAGTTTTCTT-GTA 1352
Query 1370 GAACCTAGGAACTGTTGTAATGGAAATTTTGGAGTTGTAATGTCAAAATTCAGAATGAAG 1429
|||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1353 GAAC-TAGGAGCTGTTGTAATGGAAATTTTGGAGTTGTAATGTCAAATTTCAGAATGAAG 1411
Query 1430 AGACCTTTTGTTCCTTTTACAATTATCAGATTCTGTCTATTATGGAAAACCAATGAACTA 1489
| ||||||||||||||||||| |||||||||||||||| |||| || | |||||||||||
Sbjct 1412 ATACCTTTTGTTCCTTTTACACTTATCAGATTCTGTCTGTTATTGATA-CCAATGAACTA 1470
Query 1490 CCT--GTGGGTCAAATCTTCATCGAAATTCTCTGTTTTGAATTGAATGT 1536
| | |||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1471 CTTTTGTGGGTCAAATCATCATCGAAATTCTCTGTTTTGAACTGAATGT 1519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58049533380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5