BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G56740.1 Length=1416 Score E Sequences producing significant alignments: (Bits) Value Ahg938635 jgi|Araly1|938635|scaffold_502826.1 1561 0.0 > Ahg938635 jgi|Araly1|938635|scaffold_502826.1 Length=923 Score = 1561 bits (845), Expect = 0.0 Identities = 899/925 (97%), Gaps = 4/925 (0%) Strand=Plus/Plus Query 240 TCCTCTGTTCACCCAACGAAGATGAACGGCGGTCCCTCCGGTTTCCATAATGCTCCGGTA 299 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCCTCTGTTCACCCGACGAAGATGAACGGCGGTCCCTCCGGTTTCCATAATGCTCCGGTA 60 Query 300 ACGAAAGCCTTCGTTATTACGAGCGCTCTTTTCACTGTCTTCTTCGGGATCCAAGGTCGT 359 || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 ACCAAAGCCTTCGTTATCACGAGCGCCCTTTTCACTGTCTTCTTCGGGATCCAAGGTCGT 120 Query 360 TCTTCTAAGCTCGGTTTGTCTTACCAGGACATTTTTGAGAAATTTCGGATATGGAAGTTA 419 |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 121 TCTTCTAAGCTCGGGTTGTCTTACCAGGATATTTTTGAGAAGTTTCGGATATGGAAGTTA 180 Query 420 ATCATGTCCACTTTTGCCTTCTCCTCCACACCAGAATTGATGTTCGGATTGTATTTGCTA 479 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 181 ATCATGTCGACTTTTGCCTTCTCCTCCACACCAGAATTGATGTTCGGATTGTATTTGTTA 240 Query 480 TACTACTTCCGAGTTTTTGAGAGACAGATTGGCTCAAATAAGTACTCGGTTTTTATCTTG 539 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 241 TACTACTTCCGAGTTTTTGAGAGACAGATTGGCTCAAATAAGTACTTGGTTTTTATCTTG 300 Query 540 TTCTCAGGGACTGTATCTCTATTACTCGAGGTCATTTTGTTATCACTGCTTAAAGATACC 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTCTCAGGGACTGTATCTCTATTACTCGAGGTCATTTTGTTATCACTGCTTAAAGATACC 360 Query 600 ACAGCAAACTTACTAACCTCTGGACCATACGGCCTGATATTTGCTTCGTTTATACCCTTC 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ACAGCAAACTTACTAACCTCTGGACCATACGGCCTGATATTTGCTTCGTTTATACCCTTC 420 Query 660 TACTTGGACATTCCTGTTTCAACGAGGTTTCGCGTATTTGGTGTCAACTTCTCTGATAAG 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TACTTGGACATTCCTGTTTCAACGAGGTTTCGCGTATTTGGTGTCAACTTCTCTGATAAG 480 Query 720 TCATTCATATATCTCGCAGGAGTGCAGCTTCTACTATCTTCTTGGAAAAGATCCATCTTT 779 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 481 TCATTCATATATCTCGCAGGAGTTCAGCTTCTACTATCTTCTTGGAAAAGATCCATCTTT 540 Query 780 CCTGGAATTTGCGGCATAATTGCGGGTTCCTTGTATCGTTTGAACATCCTTGGCATCCGC 839 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 541 CCTGGAATTTGCGGCATAATTGCCGGTTCCTTGTATCGTTTGAACATCCTTGGCATCCGC 600 Query 840 AAGGCAAAGTTCCCTGAGTTTGTGGCTTCGTTCTTCTCGCGGCTTTCTTTTCCCTCTTTC 899 |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 601 AAGGCAAAGTTCCCCGAGTTTGTGGCTTCATTCTTTTCGCGGCTTTCTTTTCCCTCTTTC 660 Query 900 GGTAACTCTCCTCCTCCAGCACCAAGCAGGAACATCGTTGGGACTATATCACCTAACACA 959 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 661 GGTAACTCTCCTCCTCCAGCACCAAGCAGAAACATCGTTGGGACTATATCACCTAACACA 720 Query 960 GGGCGTCGAGCAGAGAGATCTCAGCCAGCTCC-GTTGCCCTCAAGTGTGGAGCCATCTGA 1018 |||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||| Sbjct 721 GGGCGTCGAGCAGAGAGATCTCAGCCAGCTCCAGT-GCCGTCAAGTGTGGAGCCATCTGA 779 Query 1019 GGAAGCCATAACTACATTGGTATCAATGGGATTCGACAGAAACGCAGCGAGACAGGCGCT 1078 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 780 GGAAGCCATAACTACATTGGTATCAATGGGATTCGACAGAAACGCAGCGAGACAGGCACT 839 Query 1079 TGTGCACGCCAGGAATGATGTCAACGCCGCCACAAACATCCTTCTCGAAGCACAGTCCCA 1138 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 840 TGTCCACGCCAGAAATGATGTCAACGCCGCCACAAACATCCTTCTCGAAGCACAATCCCA 899 Query 1139 CTAACTTAAAAAAGG-TTTTACTCT 1162 |||| || ||||||| ||||||||| Sbjct 900 CTAA-TTGAAAAAGGGTTTTACTCT 923 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52945440550 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5