BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56820.1
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486120 jgi|Araly1|486120|fgenesh2_kg.5__2112__AT3G56820.1 1354 0.0
> Ahg486120 jgi|Araly1|486120|fgenesh2_kg.5__2112__AT3G56820.1
Length=915
Score = 1354 bits (733), Expect = 0.0
Identities = 862/923 (93%), Gaps = 13/923 (1%)
Strand=Plus/Plus
Query 46 GAAAATGGCAAACCCTAGAAGAGTAGTGATCGAGAACCAGAGATTGTCACCTTTAATCAA 105
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1 GAAAATGGCAAACCCTAGAAGAGTAGTGATCGATAACCAGAGATTGTCACCTATAATCAA 60
Query 106 CCTACTGAAGAAGCCTCAAGCGATTCCTCTGCTTCTCTCGTTGTTCCTCTTGCTCACATG 165
|||||||||||||||||||||| ||||| | || |||||||| |||||||| ||||||||
Sbjct 61 CCTACTGAAGAAGCCTCAAGCGTTTCCTATTCTCCTCTCGTTCTTCCTCTTCCTCACATG 120
Query 166 GATCTCCCTCAGGTTACAACACTCTTCACAATCACACGTCTCTTCGTCCTCTTCACATCC 225
|||||||||||||||||| ||||||| | | ||||||||||||||||||||||||||
Sbjct 121 GATCTCCCTCAGGTTACAGCACTCTT--C--T--CACGTCTCTTCGTCCTCTTCACATCC 174
Query 226 GAAATCGACGGTAAATAGTCATCCCGATTTGAAAGT-TTACGACGACGACGATAAGGCTA 284
||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 175 AAAATCGACGCTAAATAGTCATCCCGATTTGAAAGTCTT-CGACGACGACGATAAGGTTA 233
Query 285 ATTTGGTCCGGTTCGGTTTGGCGTCGCTTTCTCCTGCTCGGAAAGACGACCGTGGTTGGT 344
|| | ||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||
Sbjct 234 ATCTAGTCCGGTTCGGTTTGGCGTCGCTTTCTCCTGTTCGGAAAGACGATCGTGGATGGT 293
Query 345 TGCTTGATCCCGTTATCCTTGCTCGTGATTCTGAGCTCAAAGGTGGAGCCGCATCGTGTG 404
|||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 294 TGCTTGATCCCGTTATACTTGCTCGTGATTCTCAGCTCAAAGGTGGAGCCGCCTCGTGTG 353
Query 405 TTTCCATTCATGTTGGTGAAATACGGCCTGGTGGATTGAGGGGAAACCATAGACACCATA 464
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 354 TTTCCATTCATGTTGGTGAAATACGGCCTGGTGGATTGAGGGGAAATCATAGACACCATA 413
Query 465 CCTGTAATGAGACGTTTGTCATATGGGGAGCCAAGACAAAATTCAGGCTGGAAAACCACG 524
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 414 CCTGTAATGAGACGTTTGTCATATGGGGAGCTAAGACAAGATTCAGGCTGGAAAACCACG 473
Query 525 AAGTCGATAAAGGTTACGCCGAAGTGTTAATTGGAGAGGATGAGGTAGCTGTAGCTGTTA 584
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 474 AAGTCGATAAAGGTTACGCCGAAGTGTTAATTGGAGAGGATGAAGTAGCTGTAGCAGTTA 533
Query 585 GTCAGAGTGGCACGGCTCATGCTCTAGTAAATGTAGATCCTGTGCGTTCTACTTTCTTCA 644
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 534 GTCCGAGTGGCACGGCTCATGCTCTAGTAAATGTTGATCCTGTGCGTTCTACTTTCTTCA 593
Query 645 TAGGCTGCCAAGACCATATGCAGAACAACAGCTCAACTAGCGACTACAAAGTATGGAATG 704
|||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||||| |
Sbjct 594 TAGGATGCCAAGACTATATACAGAACAACAGCTCAAATAGCGACTACAAAGTATGGAACG 653
Query 705 ATCTATAAACCAAAGTGGGTTAGTTTAGTTTCTCTTGTTCATTCAAATTTTCATTGGCTT 764
||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||
Sbjct 654 ATCTATAAACCAAAGTGGGTTAGTTTAGTTTCTCTCAATCGTTCAGATTTTCATTGGCTT 713
Query 765 TTCTTTCTTT-CGAGCCCTTATTTGTATAGAGTAGGCTTTGTT-TTGACTGGTCAGTCAT 822
|||||||||| ||||| |||||||||||||| ||||||||||| || ||| |||||| ||
Sbjct 714 TTCTTTCTTTTCGAGCTCTTATTTGTATAGAATAGGCTTTGTTATT-ACTTGTCAGTTAT 772
Query 823 ATTGTTACTGAGATTATAAACCTGAAACTTCCAATGTT--GTGTTCATTGATATGATGGT 880
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
Sbjct 773 ATTGTTACTGAGATTATAAAACTGAAACTTCCAATGTTTAGTGTTCATTGATATGATGAT 832
Query 881 AAGATTAGTCTGATCAGTGAGAATCAATTCGTATGTAGAGTTTGTTGTTTCTTCACAGCT 940
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 833 AAGATTAGTCTGATCAGTGAGAATCAATTCGTATGTATAGTTTGTTGTTTCTTCACAGTT 892
Query 941 GAATGTGCAATGCATGTCTTTCT 963
|||| ||||||||| || |||||
Sbjct 893 GAATTTGCAATGCAAGTATTTCT 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36026156565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5