BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56850.1
Length=1729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938645 jgi|Araly1|938645|scaffold_502836.1 1456 0.0
Ahg888467 jgi|Araly1|888467|Al_scaffold_0007_453 82.4 1e-14
> Ahg938645 jgi|Araly1|938645|scaffold_502836.1
Length=943
Score = 1456 bits (788), Expect = 0.0
Identities = 893/942 (95%), Gaps = 14/942 (1%)
Strand=Plus/Plus
Query 600 TTTTTTGTCCGCTACAAAAGCCTATGGATTCTCAGAGGGGTATTGTTGAACAAGCTAAAT 659
|||||| |||||||| |||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1 TTTTTT-TCCGCTAC-AAAGTTTATGGATTCTCAGAGGGGTATTGTTGAAGAAGCTAAAT 58
Query 660 CTCAGTCCTTGAATAGGCAAAGCTCTCTTTACAGCTTAACACTTGATGAGGTTCAAAATC 719
|||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 59 CTCAGTCCTTGAATAGACAAGGCTCTCTCTACAGCTTAACACTTGATGAGGTTCAAAATC 118
Query 720 ACTTGGGGAGTTCTGGTAAAGCTCTGGGAAGCATGAACCTTGATGAGCTTTTGAAGAGTG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ACTTGGGGAGTTCTGGTAAAGCTCTGGGAAGCATGAACCTTGATGAGCTTTTGAAGAGTG 178
Query 780 TCTGTTCTGTTGAAGCTAATCAGCCATCGTCTATGGCTGTCAATGGTGGAGCAGCTGCTC 839
| |||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||
Sbjct 179 TGTGTTCTGTTGAAGCTAATCAGCCAACGTCTATGGCTGTCAATGGTGGA--A-CAGCTC 235
Query 840 AGGAGGGTCTTTCTCGCCAGGGGAGTTTGACTTTGCCTCGGGATCTCAGCAAAAAGACTG 899
|||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct 236 AGGAGGGTCTTTCTCGCCAGGGAAGTTTGACTTTGCCACGGGATCTTAGCAAAAAAACTG 295
Query 900 TTGATGAGGTTTGGAAAGACATTCAGCAGAATAAGAATGGAGGTAGTGCTCATGAGAGGA 959
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 296 TTGATGAGGTTTGGAAAGACATTCAGCAGAATAAGAATGGAGCTAGTGCTCATGAGAGGA 355
Query 960 GGGATAAGCAGCCTACACTTGGGGAAATGACGCTTGAAGACCTGTTGTTGAAAGCAGGAG 1019
| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 356 GAGATAAGCAGCCTACACTCGGGGAAATGACGCTTGAAGACTTGTTGTTGAAAGCAGGAG 415
Query 1020 TGGTCACTGAGACTATCCCTGGTTCGAACCATGATGGTCC---T-G-----TTGGTGGTG 1070
|||| ||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 416 TGGTGACTGAGACTATCCCTGGTTCGAACCATGATGGTCCTGGTGGTCCTATTGGTGGTG 475
Query 1071 GTAGTGCTGGTTCAGGTGCTGGTTTAGGGCAAAACATTACTCAAGTTGGCCCATGGATTC 1130
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 476 GTAGTGCTGGTTCAGGTGCTGGTTTAGGGCAAAACATAACTCAAGTTGGCCCATGGGTTC 535
Query 1131 AATATCATCAGCTCCCATCAATGCCACAGCCTCAAGCATTTATGCCCTATCCGGTTTCAG 1190
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 536 AATATCATCAGCTCCCATCAATGCCACAGCCTCAAGCATATATGCCATATCCGGTTTCAG 595
Query 1191 ATATGCAAGCAATGGTGTCTCAGTCTTCTTTGATGGGTGGTTTGTCAGATACACAAACTC 1250
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 596 ATATGCAAGCGATGGTGTCTCAGTCTTCTTTAATGGGTGGTTTGTCAGATACACAAACTC 655
Query 1251 CTGGAAGGAAGAGGGTAGCTTCAGgagaagttgtagagaagactgtagagaggaggcaga 1310
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CAGGAAGGAAGAGAGTAGCTTCAGGAGAAGTTGTAGAGAAGACTGTAGAGAGGAGGCAGA 715
Query 1311 agagaatgataaagaacagagagTCTGCTGCTCGTTCCCGAGCTAGGAAACAGGCTTACA 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AGAGAATGATAAAGAACAGAGAGTCTGCTGCTCGTTCCCGAGCTAGGAAACAGGCTTACA 775
Query 1371 CTCATGAGCTAGAGATCAAAGTTTCACGGTTAGAAGAAGAAAACGAAAGACTCAGGAAGC 1430
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 776 CTCATGAGCTAGAGATCAAAGTTTCGCGGTTAGAAGAAGAAAACGAAAGACTCAGGAGGC 835
Query 1431 AAAAGGAGGTGGAAAAAATCCTCCCAAGTGTACCACCGCCTGATCCCAAGCGGCAGCTCC 1490
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 836 AAAAGGAGGTGGAGAAAATCCTCCCAAGTGCACCACCGCCTGATCCCAAGCGGCAGCTCC 895
Query 1491 GACGGACAAGCTCGGCTCCTTTCTGATCTCTAAACTCttttt 1532
| || |||||||| ||||||||||||||| |||||||||||
Sbjct 896 GGCGAACAAGCTCATCTCCTTTCTGATCTCGAAACTCTTTTT 937
> Ahg888467 jgi|Araly1|888467|Al_scaffold_0007_453
Length=849
Score = 82.4 bits (44), Expect = 1e-14
Identities = 50/53 (94%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1316 atgataaagaacagagagTCTGCTGCTCGTTCCCGAGCTAGGAAACAGGCTTA 1368
||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 652 ATGATCAAGAACAGAGAATCTGCAGCTCGTTCCCGAGCTAGGAAACAGGCTTA 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64867687235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5