BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56910.1
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486132 jgi|Araly1|486132|fgenesh2_kg.5__2124__AT3G56910.1 959 0.0
Ahg486131 jgi|Araly1|486131|fgenesh2_kg.5__2123__AT3G56900.1 87.9 9e-17
> Ahg486132 jgi|Araly1|486132|fgenesh2_kg.5__2124__AT3G56910.1
Length=657
Score = 959 bits (519), Expect = 0.0
Identities = 621/667 (93%), Gaps = 19/667 (3%)
Strand=Plus/Plus
Query 1 AATCCGTTCGTTAAGAAGACACAGACAGAGAGAAGGAGAAAAAGCTTATCCACTATCAAA 60
||||||||||||||||||||||||||| || | | || ||||||||||||||||| | |
Sbjct 1 AATCCGTTCGTTAAGAAGACACAGACA-AG-G-A-GA-AAAAAGCTTATCCACTA-GAGA 54
Query 61 TGAAAGTCTGAAGACAAATTCTTCCATTAGAAGAAGAAGATGGctcttctctgcttcaat 120
| || |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 -CACAG--AGAAGACGAATTCTTCCATTAGAAGAAGAAGATGGCTCTTCTCTGCTTCAAT 111
Query 121 tctctcccttctctctcttctctttcttcttcttcttcctcgcgccttcttcaatctccg 180
|||||||||||||| |||||||| |||||||| ||||| ||||||||||||||| || ||
Sbjct 112 TCTCTCCCTTCTCTTTCTTCTCTCTCTTCTTCATCTTCGTCGCGCCTTCTTCAACCTTCG 171
Query 181 tctttcgcttctcCAGTTTTGAGCCTTAAACCCAACGCTGTCGAGTCCAAGAACAGAGTC 240
||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||
Sbjct 172 TCTTTCGCTTCTCCAGTTTGGAGCCTTAAACCCAACGCTGTTGAGTCAAAGAACAGAGTC 231
Query 241 TCTCTCAGTGCTTACAGCTTGAACTCTAGCCATGG-A-------AG-AATTGTGGTGAAG 291
||||||||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct 232 TCTCTCAGTGCTTACAGCTTGAACTCTAGCCATGGAAGGGCGGTAGCAATTGTGGTGAAG 291
Query 292 GCGGCTGCTTCTGGCGTGGACGGGGCTGAGCCTGAGAGCAAGGAGGAACCAAAGACTGTT 351
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 292 GCGGCTGCTTCTGGCGTGGACGGGGCTGAGCCCGAGAGCAATGAGGAACCAAATACTGTT 351
Query 352 GTTGCTGCTGTTCCAGTGGATAAACTACCGTTGGAATCGAAAGAAGCTAAAGAGAAACTG 411
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 352 GTTGCTGCTGTTCCAGTGGATAAACTACCATTGGAATCAAAAGAAGCTAAAGAGAAACTG 411
Query 412 CTCTTGGAATTGAGGCTGAAGATGAAGCTGGCCAAAAAGATTAGGCTACGCAGGAAACGT 471
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 412 CTCTTGGAACTGAGGCTGAAGATGAAGCTGGCCAAGAAGATTAGGCTACGCAGGAAACGT 471
Query 472 CTGGTTCGTAAGCGTAAGATGAGGAAGAAGGGTCGATGGCCACCTTCCAAGATGAAGAAA 531
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 CTGGTTCGTAAGCGTAGGATGAGGAAGAAGGGTCGATGGCCACCTTCCAAGATGAAGAAA 531
Query 532 AACAAGAATGTCTAAGTGACTCAACTGTTTGCTGCTTTTCGTATTCGTTTTTTGTAATGT 591
||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct 532 AACAAGAATGTCTAAGTGACTGAACTGTTTGCTGCTTTTCATATTCGTTTTT-GTAATGT 590
Query 592 TCTTTTTGGTGTTCAAAGACCATTAATGTACTTCAAATGCAACCATTGTTTTTGGATTTA 651
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 591 TCTTTTTGGTGTTCAAGGACCCTTAATGTACTTCAAATGCAACCATTGTTTTTGGATTTA 650
Query 652 ACTTCAA 658
|||||||
Sbjct 651 ACTTCAA 657
> Ahg486131 jgi|Araly1|486131|fgenesh2_kg.5__2123__AT3G56900.1
Length=1598
Score = 87.9 bits (47), Expect = 9e-17
Identities = 52/54 (96%), Gaps = 1/54 (2%)
Strand=Plus/Minus
Query 621 ACTTCAAATGCAACCATTGTTTTTGGATTTAACTTCAAAGCTGAGTTCTTTAAA 674
|||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1598 ACTTCAAATGCAACCATTGTTTTTGGATTTAACTTCAAT-CTGAGTTCTTTAAA 1546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25466108556
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5