BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G56940.1
Length=1493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486137 jgi|Araly1|486137|fgenesh2_kg.5__2129__AT3G56940.1 2279 0.0
> Ahg486137 jgi|Araly1|486137|fgenesh2_kg.5__2129__AT3G56940.1
Length=1435
Score = 2279 bits (1234), Expect = 0.0
Identities = 1372/1438 (95%), Gaps = 11/1438 (1%)
Strand=Plus/Plus
Query 64 CTCTTTGCTTCTGCAACTCACAGTCAATGGCGGCTGAAATGGCGTTAGTGAAACCCATCT 123
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTTTGCTTCTGCAACTCACAATCAATGGCGGCTGAAATGGCGTTAGTGAAACCCATCT 60
Query 124 CCAAGTTCTCTTCCCCAAAGCTCTCAAACCCGAGCAAATTCCTCTCCGGCCGACGTTTCT 183
|||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 CCAAATTCACTTCCCCAAAGCTCTCAAACCCGAGCAAATACCTCTCCGGCCGACGTTTCT 120
Query 184 CCACCGTGATCAGAATGTCAGCCTCTTCCTCACCGCCTCCTCCAACCACCGCCACCTCGA 243
||||||||||||||||||||||| ||||||| ||||||||||| || ||||||||||||
Sbjct 121 CCACCGTGATCAGAATGTCAGCCACTTCCTCGCCGCCTCCTCCGGCCTCCGCCACCTCGA 180
Query 244 AGTCCAAGAAGGGAACGAAGAAAGAGATTCAAGAGTCGCTTCTTACTCCGAGGTTCTACA 303
| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 AATCCAAGAAGGGGACGAAGAAAGAGATTCAGGAGTCGCTTCTTACTCCGAGGTTCTACA 240
Query 304 CGACGGACTTCGAGGAAATGGAACAGCTTTTCAACACGGAGATCAACAAGAACCTTAACG 363
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 CGACGGATTTCGAGGAAATGGAACAGCTTTTCAACACTGAGATCAACAAGAACCTTAACG 300
Query 364 AAGCAGAGTTCGAGGCTCTGCTTCAAGAGTTCAAGACCGATTACAACCAGACACATTTCG 423
| | |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 AGGAAGAGTTCGTGGCTCTGCTTCAAGAGTTCAAGACCGATTACAATCAGACACATTTCG 360
Query 424 TGAGGAACAAGGAGTTTAAAGAAGCTGCAGACAAATTGCAAGGACCTCTCCGACAGATCT 483
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 TGAGGAACAAAGAGTTTAAAGAAGCTGCAGACAAATTGCAGGGACCTCTCCGACAGATCT 420
Query 484 TCGTTGAGTTCCTTGAGCGGTCTTGTACTGCTGAGTTCTCTGGTTTCCTTCTCTACAAGG 543
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTGTTGAGTTCCTTGAGCGGTCTTGTACTGCTGAGTTCTCTGGTTTCCTTCTCTACAAGG 480
Query 544 AGCTTGGTCGAAGACTCAAGAAAACAAACCCTGTTGTGGCTGAGATCTTCTCTCTTATGT 603
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 481 AGCTTGGAAGAAGACTCAAGAAAACAAACCCTGTTGTGGCCGAGATCTTCTCTCTTATGT 540
Query 604 CTAGAGATGAAGCAAGACATGCCGGGTTCTTGAACAAGGGATTGTCTGATTTCAACTTGG 663
| |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 541 CCAGAGATGAAGCAAGGCATGCCGGGTTCTTGAACAAGGGTTTGTCTGATTTTAACTTGG 600
Query 664 CTCTTGATTTGGGTTTCCTGACAAAGGCAAGGAAATACACTTTCTTCAAGCCAAAATTCA 723
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 601 CTCTTGATTTGGGTTTCCTAACAAAGGCAAGGAAATACACTTTCTTCAAGCCGAAATTCA 660
Query 724 TCTTCTACGCGACTTACTTATCCGAGAAAATCGGGTACTGGAGATACATCACAATCTACA 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCTTCTACGCGACTTACTTATCCGAGAAAATCGGGTACTGGAGATACATCACAATCTACA 720
Query 784 GACACCTCAAGGAAAACCCTGAGTTCCAATGTTACCCAATCTTCAAGTACTTTGAGAACT 843
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GACACCTCAAGGCAAACCCTGAGTTCCAATGTTACCCAATCTTCAAGTACTTTGAGAACT 780
Query 844 GGTGTCAAGACGAGAACCGTCATGGTGATTTCTTCTCTGCTTTGATGAAAGCTCAGCCTC 903
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 781 GGTGTCAAGACGAGAACCGTCATGGAGATTTCTTCTCTGCTTTGATGAAAGCTCAGCCTC 840
Query 904 AGTTCCTCAATGACTGGCAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCGGTTTATG 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGTTCCTCAATGACTGGCAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCGGTTTATG 900
Query 964 TGACAATGTACCTCAATGACTGCCAAAGAACTAATTTCTACGAGGGTATCGGGTTAAACA 1023
||||||||||||||||||| || ||||||||| ||||||| || ||||| ||||||||||
Sbjct 901 TGACAATGTACCTCAATGATTGTCAAAGAACTGATTTCTATGAAGGTATTGGGTTAAACA 960
Query 1024 CAAAGGAGTTCGATATGCATGTCATCATCGAGACAAACCGAACCACGGCAAGAATATTCC 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CAAAGGAGTTCGATATGCATGTCATCATCGAGACAAACCGAACCACGGCAAGAATATTCC 1020
Query 1084 CTGCGGTGCTGGATGTTGAGAACCCTGAGTTCAAGAGGAAACTGGATAGAATGGTTGTGA 1143
| || |||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1021 CGGCAGTGCTGGATGTTGAGAACCCTGAGTTCAAGAGGAAACTCGACAGAATGGTTGTGA 1080
Query 1144 GCTATGAGAAGCTGCTGGCTATAGGAGAAACAGATGATGCTTCCTTCATCAAGACCCTCA 1203
|||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||
Sbjct 1081 GCTATGAGAAGCTGCTGGCTATAGGACAAACCGATGATCCTTCCTTCATCAAGACCCTCA 1140
Query 1204 AGAGGATTCCTTTGGTTACTTCTTTAGCCTCTGAGATCTTGGCTGCTTATCTCATGCCTC 1263
|| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AGCGTATTCCTTTAGTTACTTCTTTAGCCTCTGAGATCTTGGCTGCTTATCTCATGCCTC 1200
Query 1264 CTGTTGAGTCTGGCTCTGTTGATTTCGCCGAGTTTGAGCCTAATCTTGTCTATTAGTAGC 1323
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CTGTTGAGTCTGGCTCTGTCGATTTCGCCGAGTTTGAGCCTAATCTTGTCTATTAGTAGC 1260
Query 1324 TGCAATGTCAAGTCTTGAGTTTACGGCTGGTTCTTGATTTCTTGTAATTGAATGATCGAA 1383
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TGCTATGTCAAGTCTTGAGTTTACGGCTGGTTCTTGATTTCTTGTAATTGAATGATCGAA 1320
Query 1384 ACTGAGAAACATCGTCtttttttttttGCAATAAAC----T--TTT-ACTGCATATATTT 1436
|||||||||||||||||||||||||| ||||||||| | ||| |||||||||| ||
Sbjct 1321 ACTGAGAAACATCGTCTTTTTTTTTT-GCAATAAACCAAATACTTTTACTGCATATAATT 1379
Query 1437 GATCATATTGCGCATTGGACTT-ACTTAAATTTCAGATTTTATTGAACTGGTTGATAC 1493
||||| ||| | ||||||| || ||| ||||||||| |||||||||||||||||||||
Sbjct 1380 GATCAAATTACACATTGGA-TTCACT-AAATTTCAGCTTTTATTGAACTGGTTGATAC 1435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55878389415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5