BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G57020.1 Length=1370 Score E Sequences producing significant alignments: (Bits) Value Ahg938670 jgi|Araly1|938670|scaffold_502861.1 950 0.0 Ahg938669 jgi|Araly1|938669|scaffold_502860.1 610 8e-174 > Ahg938670 jgi|Araly1|938670|scaffold_502861.1 Length=1073 Score = 950 bits (514), Expect = 0.0 Identities = 581/614 (95%), Gaps = 2/614 (0%) Strand=Plus/Plus Query 576 TAGTGACAAGTATCATTTCAGGGACGTATTTTTCGTGGCTGTCAGTGGGGAGCGGTCGGG 635 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 459 TAGTGACAAGTATCATTTCAGGGACGTATTTTTCGTGGCTATCAGTGGGGAGCGGTCGGG 518 Query 636 AAGAGTGATCAGATACGATAAGAAGACGAAAGAAGCCAAAGTTATCATGGACAATCTCGT 695 ||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| Sbjct 519 AAGAGTGATCAGATACGATAAGAAGACGAAAGAGGCCAAAGTTGTCATGGACAACCTCGT 578 Query 696 TTGTAACAACGGTTTGGCTCTAAACAAAGACCGGTCTTTTCTAATTACATGCGAGTCCGG 755 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 579 TTGTAACAACGGTTTGGCTCTAAACAAAGACCGGTCTTTTCTAATAACATGCGAGTCCGG 638 Query 756 CACAAGTCTTGTCCACCGATACTGGATTAAAGGTCCCAAAGCCGGGACTCGTGATATCTT 815 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 639 CACGAGTCTTGTCCACCGATACTGGATCAAAGGTCCCAAAGCCGGGACTCGTGATATCTT 698 Query 816 TGCGAAGGTCCCAGGTTACCCTGACAACATCCGGCTGACATCAACTGGAGACTTTTGGAT 875 ||| |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 699 TGCCAAGGTCCCGGGTTACCCTGACAACATCCGGCTGACATCGAGTGGAGACTTTTGGAT 758 Query 876 TGGTTTACACTGCAAGAAAAATCTGATAGGGAGATTGATTGTGAAGTACAAATGGCTTGG 935 |||| |||||||||||||||| ||| ||||| |||||||| ||| ||| ||||||||||| Sbjct 759 TGGTATACACTGCAAGAAAAACCTGCTAGGGCGATTGATTTTGAGGTATAAATGGCTTGG 818 Query 936 GAAATTGGTAGAAAAGACAATGAAACTGGAGTACGTGATTGCTTTTATTAACGGATTTAA 995 ||||||||| ||||||||| | |||||||||||||||||||||||||| ||||||||||| Sbjct 819 GAAATTGGTTGAAAAGACAGTAAAACTGGAGTACGTGATTGCTTTTATCAACGGATTTAA 878 Query 996 ACCGCACGGAGTCGCCGTGAAAATCTCCGGCGAGAC-GGGAGAGGTACTTGAGTTACTTG 1054 |||||| ||||| ||||||||||||||||| ||||| ||| ||||| |||||| |||||| Sbjct 879 ACCGCAAGGAGTGGCCGTGAAAATCTCCGGGGAGACAGGG-GAGGTCCTTGAGGTACTTG 937 Query 1055 AGGACAAAGAAGGAAAGACAATGAAGTATGTAAGCGAGGCTTATGAAAGAGATGATGGAA 1114 ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 938 AGGACAAAGAAGGAAAGACTATGAAGTATGTAAGCGAGGCTTATGAGAGAGATGATGGAA 997 Query 1115 AGTTGTGGTTTGGGTCTGTTTACTGGCCAGCCGTTTGGGTTCTTGATCGCAAATGAGTGA 1174 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 998 AGTTATGGTTTGGGTCTGTTTACTGGCCAGCCGTTTGGGTTCTTGATCGCAAATGAGTGA 1057 Query 1175 TCATGTTGTATCTA 1188 | |||||||||||| Sbjct 1058 TTATGTTGTATCTA 1071 Score = 403 bits (218), Expect = 2e-111 Identities = 255/273 (93%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 42 TTGTTCCGGCGGAAAAATGCCCATTAATCAGAAAATTCCGACTTGGTTTGCCGTTCCGGC 101 ||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| | Sbjct 6 TTGTTCCGGCGAAAAAATGCCCACTAATCACAAAATTCCGACTTGGTTTGCCGTTCCGAC 65 Query 102 TGTTTTTGCTGTCTTGTCCGTAATCTCGTATCAAACCTTAATTGTGCCGGAAAATTTAGA 161 ||| || ||||||||||||||| ||| |||||| | ||||||||| |||||||||||||| Sbjct 66 TGTGTTGGCTGTCTTGTCCGTAGTCTTGTATCAGATCTTAATTGTTCCGGAAAATTTAGA 125 Query 162 GGGCGCCAAAAATGTATTGACAATGGCTAAGACCATACCAATTCCTGTCGCTGGACCGGA 221 |||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| Sbjct 126 GGGCACCAAAAATGTATTGACAATGGCTAAAACCATTCCAATTCCTGTTACTGGACCGGA 185 Query 222 GAGCATTGAGTTTGACCCAAAAGGAGAAGGTCCTTATGCTGCGGTCGTGGACGGCCGTAT 281 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 186 GAGCATTGAGTTTGACCCTAAAGGAGAAGGTCCTTATGCTGCGGTCGTGGACGGCCGTAT 245 Query 282 TCTCAAGTGGCGCGGCGATGATC-TCGGCTGGG 313 ||||||||||||||||||||||| ||||||||| Sbjct 246 TCTCAAGTGGCGCGGCGATGATCATCGGCTGGG 278 Score = 270 bits (146), Expect = 2e-71 Identities = 167/177 (94%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 343 GGGAACTGTTCAAAAAC-TGAAGTAGTGCCTACTTGTGGAAGGCCATTAGGACTTACTTT 401 ||||| ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 277 GGGAATTGTTC-AAAACATGAAGTAGTGCCTACTTGTGGAAGGCCATTGGGACTTACTTT 335 Query 402 CGAGAAGAAAACGGGAGATTTGTACATATGTGATGGTTACTTGGGGCTCATGAAAGTTGG 461 ||||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||| Sbjct 336 CGAGAAGAAAACGGGCGATTTGTACATCTGCGATGGTTACTTGGGGCTCATGAAGGTTGG 395 Query 462 ACCAGAGGGAGGCTTGGCCGAGTTAATTGTTGATGAAGCCGAAGGTCGTAAAGTTAT 518 ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 396 ACCAGAGGGAGGCTTGGCCGAGTTAGTTGTTGATGAAGTCGAAGGTCGTAAAGTTAT 452 > Ahg938669 jgi|Araly1|938669|scaffold_502860.1 Length=1157 Score = 610 bits (330), Expect = 8e-174 Identities = 828/1060 (78%), Gaps = 68/1060 (6%) Strand=Plus/Plus Query 147 GCCGGAAAATTTAGAGGGCGCCAAAAATGT-ATTGACA-ATGGCTAAGACCATACCAATT 204 |||||||||| || ||||| | ||| | || || | | || |||| |||||| || || Sbjct 114 GCCGGAAAATATAAAGGGCACGAAACACGTCCTTCA-AGAT-GCTATGACCATTCCTCTT 171 Query 205 CCTGTCGCTGGACCGGAGAGCATT-GAGTTTGACCCAAAAGGAGAAGGTCCTTATGCT-G 262 || | || |||||| |||||| || ||||| || ||| |||| ||||| ||||| | | | Sbjct 172 CCCGCCGATGGACCAGAGAGC-TTAGAGTTCGATCCACAAGGTGAAGGACCTTACGTTGG 230 Query 263 CGGTCGTGGACGGCCGTATTCTCAAGTGGCGCGGCGATGATCTCGGCTGGGTTGATTTTG 322 | ||| ||||| || |||||||| |||||||| || || ||||||||||| ||||||| Sbjct 231 C-GTCACCGACGGTCGCATTCTCAAATGGCGCGGTGAAGAACTCGGCTGGGTCGATTTTG 289 Query 323 CCTACACATCTCCTCACAGAGGGAACTGTTCAAAAAC-TGAAGTAGTGCCTACTTGTGGA 381 ||||||| ||||||||||||| |||||||| | | ||| ||||| || | ||||||| Sbjct 290 CCTACACTTCTCCTCACAGAGATAACTGTTC-GAGGCATGAGGTAGTACCAAGTTGTGGA 348 Query 382 AGGCCATTAGGACTTACTTTCGAGAAGAAAACGGGAGATTTGTACATATGTGATGGTTAC 441 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 349 AGGCCATTGGGACTTACTTTCGAGAAGAAAACGGGAGATTTGTACATATGTGATGGTTAC 408 Query 442 TTGGGGCTCATGAAAGTTGGACCAGAGGGAGGCTTGGCCGAGTTAATTGTTGATGAAGCC 501 || || |||||||| || ||||||||||||||||||||||||||| |||||||||||| | Sbjct 409 TTTGGCCTCATGAAGGTCGGACCAGAGGGAGGCTTGGCCGAGTTAGTTGTTGATGAAGTC 468 Query 502 GAAGGTCGTAAAGTTATGTTTGCTAACCAAGGGGATATAGACGAAGAGGAAGATGTCTTT 561 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 469 GAAGGTCGTAAAGTTATGTTTGCTAACCAAGGAGATATAGACGAAGAGGAAGATATCTTC 528 Query 562 TACTTCAATGATAGTAGTGACA-AGTATCATTTCAGGGACGTATTTTTCGTGGCT--GTC 618 |||||||||||||| || || | | || ||||||||||| ||||||| |||| || ||| Sbjct 529 TACTTCAATGATAGCAGCGATACA-TACCATTTCAGGGAAGTATTTTACGTGTCTATGTC 587 Query 619 AGTGGGGAGCGGTCGGGAAGAGTGATCAGATACGATAAGAAGACGAAAGAAGCCAAAGTT 678 | || | ||| || |||||| || |||||||||| ||||| |||||| |||||||| Sbjct 588 CG-GGACAAAGGTTGG-AAGAGTAATTAGATACGATATGAAGAAGAAAGAGGCCAAAGTA 645 Query 679 ATCATGGACAATCT-CGTTTGTAACAAC-GGTTTGGCTCTAAACAAAGACCGG-TCTTTT 735 || |||||||| || ||||| | ||| ||| | ||||||| |||| || || || ||| Sbjct 646 ATTATGGACAAACTTCGTTT--ACCAAATGGTCTAGCTCTAAGCAAAAAC-GGATCGTTT 702 Query 736 CTAATTACATGCGAGTCCGGCAC-AAG-TCTTGTCCACCGA-TACTGGATTAAAGGTCCC 792 || | ||||||||| | | || || | ||| ||| ||| || ||| | ||||||||| Sbjct 703 GTAGTCACATGCGAGAGCAGTACGAACAT-TTG-CCATCGAATA-TGGGTCAAAGGTCCC 759 Query 793 AAAGCCGGGACTCGT-GATATCTTT-GCGAAGG-TCCCAGGTTACCCTGACAACATCCGG 849 ||| | || || | || | ||| || || | |||| |||| ||||||||| |||||| Sbjct 760 AAATCTGGAAC-CAACGAGGT-TTTCGC-AACGCTCCCTGGTTCCCCTGACAATATCCGG 816 Query 850 C-TGACATCAACTGGAGACTTT-TGGATTGGT-TTACACTGCAAGAAA-AATCTGAT-AG 904 | | || |||| || || ||| ||| | || ||||| ||||| ||| ||| || | | Sbjct 817 CGT-ACGCCAACGGGCGA-TTTCTGGGT-GGCATTACATTGCAA-AAAGAATTTGTTCAC 872 Query 905 G-GAGATTGATTGTGAAGT-ACAAAT-GGCTTGGGAAA-TTGGT-A-GAAAAGACAATGA 958 | | | | ||| | ||| | || | || || || | | ||| | | |||| Sbjct 873 TCGTGCG-GCTC-TGAT-TCACAGTTTGG-TCGG-AAGGTTTTTCATGAATA--CGATGA 925 Query 959 A-ACTGGAGTAC-GTGATTGCTTTT-ATTAACGGATTTAAACCGCACGGAGTCGCCGTGA 1015 | | ||||| || || || | ||| || |||||| ||||| || ||| | | ||||| Sbjct 926 AGA-TGGAG-ACTGTAATC-CATTTCATGAACGGAGGAAAACCTCATGGAATTGTCGTGA 982 Query 1016 AAATCTCCGGCGAGACGGGAGAGGTACTTGAGTTACTTGAGGACAAAGAAGGAAAGACAA 1075 || |||| || ||||| |||||| | |||||| |||||||||||| ||||| ||||| Sbjct 983 AACTCTCTGGAGAGACAGGAGAGATCCTTGAGATACTTGAGGACAGTGAAGGGAAGACGG 1042 Query 1076 TGAAGTATG-TAAGCGAGGCTTATGAAAGAGATGATGGAAAGTTGTGGTTTGGGTCTGTT 1134 ||||||||| || | ||||||||||| | ||| ||||||||||| ||| | ||||| || Sbjct 1043 TGAAGTATGCTA-GTGAGGCTTATGAGACAGAAGATGGAAAGTTATGGATCGGGTCCGTG 1101 Query 1135 TACTGGCCAGCCGTTTGGGTTCT-TGAT-CGCAAATGAGT 1172 || ||||| |||||||||||| | |||| | ||||| ||| Sbjct 1102 TATTGGCCGGCCGTTTGGGTT-TATGATTC-CAAATAAGT 1139 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51275323365 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5