BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G57070.1

Length=1724
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486152 jgi|Araly1|486152|fgenesh2_kg.5__2144__AT3G57070.1        2529    0.0   
  Ahg952326 jgi|Araly1|952326|scaffold_5900002.1                       375    4e-103
  Ahg912506 jgi|Araly1|912506|Al_scaffold_0001_2760                    359    4e-98 
  Ahg934956 jgi|Araly1|934956|scaffold_402944.1                        357    2e-97 
  Ahg916008 jgi|Araly1|916008|Al_scaffold_0008_759                     353    2e-96 


> Ahg486152 jgi|Araly1|486152|fgenesh2_kg.5__2144__AT3G57070.1
Length=1723

 Score = 2529 bits (1369),  Expect = 0.0
 Identities = 1629/1747 (93%), Gaps = 47/1747 (3%)
 Strand=Plus/Plus

Query  1     ATCAAAATCAAATCGAGAACTGTTGTTGTGTCCGAAAATCAACATCAACATCGTTTCTTT  60
             |||||||||||||||||||||| ||  |||||||||||||||||||||||||| ||| ||
Sbjct  1     ATCAAAATCAAATCGAGAACTG-TG--GTGTCCGAAAATCAACATCAACATCG-TTC-TT  55

Query  61    CTTCTGCCATTAAATTTCACCATCTTCCACCTTCAACTGCCCTAGACAGCTATTCTCCAC  120
             || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  56    CTGCTGCCATTAAATTTCACCATCTTCCACCTCCAACTGCCCTAGACAGCTATTCTCCAC  115

Query  121   CTTTCTCTTTTCTCTCTCTGTTCTCTATCATTCCCAGAG-ATAACCAAACAATCTCAGAA  179
             ||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||
Sbjct  116   CTTTCTCTTTTCTCTCTCTGTTCTCTATCATTCCCAGAGCAAAACCAAA-AATCTCAGAA  174

Query  180   GAAACCAGAAAGAGCAAAGAAACTAAAAACTATTATTCAT-TAAAGTC-AGTGTTTTTAA  237
             |||||||||||||||||||||||| |||| | | |  | |  |||||| ||||||||| |
Sbjct  175   GAAACCAGAAAGAGCAAAGAAACT-AAAAGTCTAAAACCTAAAAAGTCAAGTGTTTTT-A  232

Query  238   ATTCGATTTCGTAATGGGTTCTTCTGCTTCAAAGACCGCTTCTTCCGTTTCTTCTGCTTC  297
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct  233   ATTCGATTTCGTAATGGGTTCTTCTGCTTCAAAGACCGCTTCTTCTGTTTCTTCTACTTC  292

Query  298   TTCCTCATCTGCGTTTTCTCCACCGCCGACCAAATTCAGCTCCGA-T--TCATCTTCACC  354
             ||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||
Sbjct  293   TTCCTCATCTGCGTTTTCTCCACCGCCGACCAAATTCAGCTCCGATTCATCATCTTCACC  352

Query  355   GGCGGTGCAGAGAGCTTTTTCGTTTCCGACGCCGTTGGTTCACCATCCTCCGGCGAGAAA  414
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  353   GGCGGTGCAGAGAGCTTTTTCGTTTCCGACGCCGTTGGTTCACCATCCTCCGGCGAGAAA  412

Query  415   AGGCGACTCTCATCACCTTGTTTCCCTTACATCTACATCGTACGGTTCTCTTCTCCTCCT  474
             ||||||| ||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct  413   AGGCGACACTCATCACCTTGTCTCCCTCACATCTACGTCGTACGGTTCTCTTCTCCTCCT  472

Query  475   TGATCTCGATGGATCCAAAAACTCCTCTTCCGACCAACAAACGCTGCCTCGTATCTCAAT  534
              ||||||||||||||||| |||| | | ||||||||||||||||||||||||||||||||
Sbjct  473   CGATCTCGATGGATCCAATAACT-C-C-TCCGACCAACAAACGCTGCCTCGTATCTCAAT  529

Query  535   CTCCGGGAAGAACACACCAGATCCGGTCTCTCCTGATTCAGTCATAAACACTTGGGAGCT  594
             |||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct  530   CTCCGGGAAGAACACACCAGATCCGGTCTCTCCTGACTCCGTCATAAACACGTGGGAGCT  589

Query  595   TATGGATGGCTTGGACGATGAATTCGAATTCGAAATTCCCAAACCGGGTAAGCGTCTAAA  654
             |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct  590   TATGGATGGCTTGGACGACGAATTCGAATTCGAAATTCCCAAACCTGGTAAGCGTCTAAA  649

Query  655   TTCGGATTTTTGCTCTAAACCCGACCCGAATCGGAATGTGAGTTTAAATGGGTCTTCGTT  714
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  650   TTCGGATTTTTGCTCTAAACCCGACCCGAATCGGAATGTGAGTTTAAATGGGTCTGCGTT  709

Query  715   GAAATTGGATGAATCTTACGAGATTGTGAGAATCGAAGAAGACGATGGAGATTGGGTTCC  774
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  710   GAAATTGGATGAATCTTACGAGATTGTGAGAATCGAAGAAGACGATGGAGATTGGGTTCC  769

Query  775   TTTGACTTATAAACCTAAGCAACCTTTGTGGAAGCATTTGTCTGAAGAATCATTTCTCTC  834
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  770   TTTGACTTATAAACCTAAGCAACCTTTGTGGAAGCATTTGTCTGAAGAATCATTTCTCTC  829

Query  835   TGATTTAGATCCCAGCATTGTCTCATCCTACAAGAAAGCTTTGTCTTCTAAGCTATTAAG  894
             ||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||
Sbjct  830   TGATTTAGATCCCAGCATTGTCTCATCTTACAAGAAAGCTTTGTCTTCCAAGCAATTAAG  889

Query  895   CAATCATAGTAATACTAGAAACCCTCATAGACCCACAAAGTCTCTCTCTTGTAGCCCATC  954
             |||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||||
Sbjct  890   CAATCATAGTAACACTAGAAACCCTCTTAGACCCACAAAATCCCTCTCTTGTAGCCCATC  949

Query  955   ATCAAATCCATCCATCTTAATAAGCGAAGAACCAAAATCTGTATCCTCTAGTCAATTGAT  1014
             |||    | |||  | | ||| || |||||||||||||||||||||||||||||| ||||
Sbjct  950   ATC----C-ATC--T-T-AATCAGTGAAGAACCAAAATCTGTATCCTCTAGTCAACTGAT  1000

Query  1015  TTCATCACCAG-CCAAACCGAGATTACCAGGAACAGAAGACAAGATTGTACTCTACTTCA  1073
             |||||||| || ||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct  1001  TTCATCAC-AGGCCAAACCGAGATTACCAGGGACAGAAGACAAGATTGTGCTCTACTTCA  1059

Query  1074  CAACCCTCAGAGGAATTCGAAAGACATACGAGGATTGTTGTTGCGTTAGAGCGATATTGA  1133
             |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct  1060  CAACCCTCCGAGGAATTCGAAAGACATACGAGGATTGCTGTTGCGTTAGAGCGATACTGA  1119

Query  1134  GAGGAG-TTCAAGTGTCCGTAGACGAACGTGACATCTCTATGGATTCCAAATACAGGAAA  1192
             |||| | |||||||  | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1120  GAGG-GCTTCAAGTCACGGTAGACGAACGTGACATCTCTATGGATTCTAAATACAGGAAA  1178

Query  1193  GAGCTTCAAAGCGTGCTTGGCGCCGCAGAGAAACCGGTTTGTTTGCCTCAGGTGTTTATC  1252
             ||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct  1179  GAGCTTCAAAGTGTGCTTGTTGCCGCAGAGAAACCGGTTTGTTTGCCTCAGGTGTTTATC  1238

Query  1253  AGAGGAACTCACATTGGTGGCGTGGAGGAGATTATGCAGCTAAATGATGGTGGTGAATTA  1312
             |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1239  AGAGGAACTCACATTGGTGGCGTGGAGGAGATTATGCAGCTAAACGATGGTGGTGAATTA  1298

Query  1313  GCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGCCGGAGCTGTGGT  1372
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1299  GCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGCCGGAGCTGTGGG  1358

Query  1373  GATGCAAGGTTTGTGCCTTGTACTAACTGTGATGGTAGCACCAAAGTGTTTGAAGAACAA  1432
             ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct  1359  GATGCAAGGTTTGTGCCTTGTACTAACTGCGACGGAAGCACCAAAGTGTTTGAAGAACAA  1418

Query  1433  GATGAACGGTTTAAGCGGTGTCCTAAATGCAATGAGAATGGATTGGTGCGTTGTCGTGTG  1492
             || |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct  1419  GACGAACGGTTCAAGCGATGTCCTAAATGCAATGAGAATGGATTGGTGCGTTGTCGCGTG  1478

Query  1493  TGTTGTCTCTAAGTGATCAGTTTGATCAAAAGATGTGTGTGAGAAAGGGGA-TATAGATT  1551
             |||||||||||||||||| ||||||||||||| |||| | | ||||||||| ||||||||
Sbjct  1479  TGTTGTCTCTAAGTGATCTGTTTGATCAAAAGCTGTGCGGGTGAAAGGGGAATATAGATT  1538

Query  1552  GATTGACTAAACATGGTATTTGGTTAGTAATGTATATTCAAATAAGTAAGTTGGCTCAAG  1611
             |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1539  GATTGACTAAACCTGGTATTTGGTTAGTAATGTATATTGAAATAAGTAAGTTGGCTCAAG  1598

Query  1612  CCTTTTATTATTTACTCT-T-ATGAGTTGTGTTCTTTTGTTCCATTTACGCTCTTGACCT  1669
             ||||||||  || ||||| | |||| |||||||||||||||||||||| | |||||| ||
Sbjct  1599  CCTTTTATG-TT-ACTCTCTTATGACTTGTGTTCTTTTGTTCCATTTATGTTCTTGATCT  1656

Query  1670  T-----TTGAACTAAATGATTCTTACTATA-TG-A--A---GTACATCAAATGGTAGATG  1717
             |     || ||||||||||||||||||||| |  |  |   |||||| ||||| ||||||
Sbjct  1657  TGACCCTTAAACTAAATGATTCTTACTATACTATATTATAAGTACATAAAATGTTAGATG  1716

Query  1718  ATGATTG  1724
             |||||||
Sbjct  1717  ATGATTG  1723


> Ahg952326 jgi|Araly1|952326|scaffold_5900002.1
Length=256

 Score =  375 bits (203),  Expect = 4e-103
 Identities = 232/246 (94%), Gaps = 2/246 (1%)
 Strand=Plus/Plus

Query  1299  ATGGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACAT  1358
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1     ATGGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACAT  60

Query  1359  GCCGGAGCTGTGGTGATGCAAGGTTTGTGCCTTGTACTAACTGTGATGGTAGCACCAAAG  1418
             |||| |||||||| ||||||||||||||||||||||||||||| || || ||||||||||
Sbjct  61    GCCGTAGCTGTGGGGATGCAAGGTTTGTGCCTTGTACTAACTGCGACGGAAGCACCAAAG  120

Query  1419  TGTTTGAAGAACAAGATGAACGGTTTAAGCGGTGTCCTAAATGCAATGAGAATGGATTGG  1478
             |||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct  121   TGTTTGAAGAACAAGACGAACGGTTCAAGCGATGTCCTAAATGCAATGAGAATGGATTGG  180

Query  1479  TGCGTTGTCGTGTGTGTTGTCTCTAAGTGATCAGTTTGATCAAAAGATGTGTGTGAGAAA  1538
             ||||||||||||||| | |||||||||||||| ||||||||||||| |||||| | ||||
Sbjct  181   TGCGTTGTCGTGTGT-T-GTCTCTAAGTGATCTGTTTGATCAAAAGCTGTGTGGGTGAAA  238

Query  1539  GGGGAT  1544
             ||||||
Sbjct  239   GGGGAT  244


> Ahg912506 jgi|Araly1|912506|Al_scaffold_0001_2760
Length=234

 Score =  359 bits (194),  Expect = 4e-98
 Identities = 219/231 (95%), Gaps = 2/231 (1%)
 Strand=Plus/Plus

Query  1301  GGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGC  1360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1     GGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGC  60

Query  1361  CGGAGCTGTGGTGATGCAAGGTTTGTGCCTTGTACTAACTGTGATGGTAGCACCAAAGTG  1420
             || |||||||| ||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct  61    CGTAGCTGTGGGGATGCAAGGTTTGTGCCTTGTACTAACTGCGACGGAAGCACCAAAGTG  120

Query  1421  TTTGAAGAACAAGATGAACGGTTTAAGCGGTGTCCTAAATGCAATGAGAATGGATTGGTG  1480
             |||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct  121   TTTGAAGAACAAGACGAACGGTTCAAGCGATGTCCTAAATGCAATGAGAATGGATTGGTG  180

Query  1481  CGTTGTCGTGTGTGTTGTCTCTAAGTGATCAGTTTGATCAAAAGATGTGTG  1531
             ||||||||||||| | |||||||||||||| ||||||||||||| ||||||
Sbjct  181   CGTTGTCGTGTGT-T-GTCTCTAAGTGATCTGTTTGATCAAAAGCTGTGTG  229


> Ahg934956 jgi|Araly1|934956|scaffold_402944.1
Length=1267

 Score =  357 bits (193),  Expect = 2e-97
 Identities = 365/446 (82%), Gaps = 20/446 (4%)
 Strand=Plus/Plus

Query  1050  AAG-ACAAGATTGTACTCTACTTCACAACCCTCAGAGGAATTCGAAAGACATACGAGGAT  1108
             ||| ||||||| ||| | |||||||| | ||||||||||||||||||||| || || |||
Sbjct  795   AAGAACAAGATAGTATTGTACTTCACTAGCCTCAGAGGAATTCGAAAGACGTATGAAGAT  854

Query  1109  TGTTGTTGCGTTAGAGCGATATTGAGAGGAG-TTCAAG-TGTCCGTAGACGAACGTGACA  1166
             ||||||||||||||| ||||||||||||| | |||| | || | ||||| ||||| ||||
Sbjct  855   TGTTGTTGCGTTAGAACGATATTGAGAGG-GTTTCAGGTTG-CGGTAGAGGAACGCGACA  912

Query  1167  TCTCTATGGATTCCAAATACAGGAAAGAGCTTCAAAGCGTGCTTGGCGCCGCAGAGAAAC  1226
             |||| |||||||||||||| || ||||||||||  ||  |||    ||  | ||||||||
Sbjct  913   TCTCAATGGATTCCAAATATAGAAAAGAGCTTC--AGAATGC-ACTCGGTGAAGAGAAAC  969

Query  1227  CGGTTTGTTTGCCTCAGGTGTTTATCAGAGGAACTCA-CATTGGTGGCGTGGAGGAGATT  1285
             ||||||||||||||||||||||||| |||||   ||  |||||||||  | |||||||| 
Sbjct  970   CGGTTTGTTTGCCTCAGGTGTTTATAAGAGGTG-TCCGCATTGGTGGAATTGAGGAGATC  1028

Query  1286  ATGC-AGCTAAATGATGGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGA  1344
             | |  | || || ||||| || ||| | ||||||||||| ||||||||||||||||||||
Sbjct  1029  AAGATA-CTCAACGATGGAGGCGAACTGGCAGAGATGTTAAAAGATTTCCCTGCTTGTGA  1087

Query  1345  A-CGCTTGGG-GACATGCCGGA-GCTGTGGTGATGCAAGGTTTGTGCCTTGTACTAACTG  1401
             | | | |||| | | ||| | | |||| || ||||||||||||||||| |||||||| ||
Sbjct  1088  ATC-CGTGGGAGCC-TGC-GAAAGCTGCGGGGATGCAAGGTTTGTGCCGTGTACTAATTG  1144

Query  1402  TGATGGTAGCACCAAAGTGTTTGAAGAACAAGATGAACGGTTTAAGCGGTGTCC-TAAAT  1460
             || |||||| || ||||||||||| ||| |||| ||  |||||||| | || |  | |||
Sbjct  1145  TGGTGGTAGTACTAAAGTGTTTGAGGAAAAAGAAGATGGGTTTAAGAGATG-CAATGAAT  1203

Query  1461  GCAATGAGAATGGATTGGTGCGTTGT  1486
             ||||||||||||||||||| ||||||
Sbjct  1204  GCAATGAGAATGGATTGGTACGTTGT  1229


 Score =  189 bits (102),  Expect = 6e-47
 Identities = 273/349 (78%), Gaps = 37/349 (11%)
 Strand=Plus/Plus

Query  563  TCTCCTGATTCAGTCATAAACACTTGGGAGCTTATGGATGGCTTGGACGATGAATTCGAA  622
            |||||||| ||||| || ||||| |||||||| ||| | ||| | ||||| || |||| |
Sbjct  318  TCTCCTGACTCAGTGATCAACACATGGGAGCTCATGAACGGCCTCGACGACGATTTCG-A  376

Query  623  TTC-GA-AATTCCCAAAC-CG---G-GTAA--GCGTC-TAAATTCGGATT-TTTGCTCTA  671
             || || |||||| | ||  |   | ||||   |||| |||||| ||||| |||  ||||
Sbjct  377  CTCTGAGAATTCCGATACAAGTAAGCGTAATTCCGTCGTAAATTTGGATTGTTT-TTCTA  435

Query  672  AACCCGA-CCCGAATCGGA-ATGTGAGTT-TAAATGGGTCTTCGTTGAAATTGGATGAAT  728
            ||||| | |  ||||| || | ||| ||| | ||||||||||||||||||||||| ||||
Sbjct  436  AACCC-ATCAAGAATC-GAGACGTG-GTTATTAATGGGTCTTCGTTGAAATTGGACGAAT  492

Query  729  CTTACGAGATTGTGAGAATCGAAGAAGACGATGGAGATTGGGTTCCTTTGACTTATAAAC  788
            |||||  ||     ||  | || |||||   ||||||     || |  || ||| |||||
Sbjct  493  CTTAC--GA-----AG-CT-GAGGAAGA--TTGGAGA-----TTAC--TGCCTTTTAAAC  534

Query  789  CTAAGCAACCTTTGTGGAAGCATTTGTCTGAAGAATCATTTCTCTCTGATTTAGATCCCA  848
            ||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct  535  CTAAGCAACCTCTGTGGAAACATATGTCTGAAGAATCATTTCTCTCTGATTTAGATCCTA  594

Query  849  GCATTGTCTCATCCTACAAGAAAGCTTTGTCTTCTAAGCTATTAAGCAA  897
             |||| ||||||| ||||||||||| ||||||||||||| | |||||||
Sbjct  595  ACATTATCTCATCTTACAAGAAAGCATTGTCTTCTAAGCAACTAAGCAA  643


> Ahg916008 jgi|Araly1|916008|Al_scaffold_0008_759
Length=234

 Score =  353 bits (191),  Expect = 2e-96
 Identities = 218/231 (94%), Gaps = 2/231 (1%)
 Strand=Plus/Plus

Query  1301  GGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGC  1360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1     GGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGC  60

Query  1361  CGGAGCTGTGGTGATGCAAGGTTTGTGCCTTGTACTAACTGTGATGGTAGCACCAAAGTG  1420
             || |||||||| ||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct  61    CGTAGCTGTGGGGATGCAAGGTTTGTGCCTTGTACTAACTGCGACGGAAGCACCAAAGTG  120

Query  1421  TTTGAAGAACAAGATGAACGGTTTAAGCGGTGTCCTAAATGCAATGAGAATGGATTGGTG  1480
             ||||||||||||||  ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct  121   TTTGAAGAACAAGACAAACGGTTCAAGCGATGTCCTAAATGCAATGAGAATGGATTGGTG  180

Query  1481  CGTTGTCGTGTGTGTTGTCTCTAAGTGATCAGTTTGATCAAAAGATGTGTG  1531
             ||||||||||||| | |||||||||||||| ||||||||||||| ||||||
Sbjct  181   CGTTGTCGTGTGT-T-GTCTCTAAGTGATCTGTTTGATCAAAAGCTGTGTG  229



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 64677236010


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5