BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G57070.1 Length=1724 Score E Sequences producing significant alignments: (Bits) Value Ahg486152 jgi|Araly1|486152|fgenesh2_kg.5__2144__AT3G57070.1 2529 0.0 Ahg952326 jgi|Araly1|952326|scaffold_5900002.1 375 4e-103 Ahg912506 jgi|Araly1|912506|Al_scaffold_0001_2760 359 4e-98 Ahg934956 jgi|Araly1|934956|scaffold_402944.1 357 2e-97 Ahg916008 jgi|Araly1|916008|Al_scaffold_0008_759 353 2e-96 > Ahg486152 jgi|Araly1|486152|fgenesh2_kg.5__2144__AT3G57070.1 Length=1723 Score = 2529 bits (1369), Expect = 0.0 Identities = 1629/1747 (93%), Gaps = 47/1747 (3%) Strand=Plus/Plus Query 1 ATCAAAATCAAATCGAGAACTGTTGTTGTGTCCGAAAATCAACATCAACATCGTTTCTTT 60 |||||||||||||||||||||| || |||||||||||||||||||||||||| ||| || Sbjct 1 ATCAAAATCAAATCGAGAACTG-TG--GTGTCCGAAAATCAACATCAACATCG-TTC-TT 55 Query 61 CTTCTGCCATTAAATTTCACCATCTTCCACCTTCAACTGCCCTAGACAGCTATTCTCCAC 120 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 56 CTGCTGCCATTAAATTTCACCATCTTCCACCTCCAACTGCCCTAGACAGCTATTCTCCAC 115 Query 121 CTTTCTCTTTTCTCTCTCTGTTCTCTATCATTCCCAGAG-ATAACCAAACAATCTCAGAA 179 ||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| Sbjct 116 CTTTCTCTTTTCTCTCTCTGTTCTCTATCATTCCCAGAGCAAAACCAAA-AATCTCAGAA 174 Query 180 GAAACCAGAAAGAGCAAAGAAACTAAAAACTATTATTCAT-TAAAGTC-AGTGTTTTTAA 237 |||||||||||||||||||||||| |||| | | | | | |||||| ||||||||| | Sbjct 175 GAAACCAGAAAGAGCAAAGAAACT-AAAAGTCTAAAACCTAAAAAGTCAAGTGTTTTT-A 232 Query 238 ATTCGATTTCGTAATGGGTTCTTCTGCTTCAAAGACCGCTTCTTCCGTTTCTTCTGCTTC 297 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 233 ATTCGATTTCGTAATGGGTTCTTCTGCTTCAAAGACCGCTTCTTCTGTTTCTTCTACTTC 292 Query 298 TTCCTCATCTGCGTTTTCTCCACCGCCGACCAAATTCAGCTCCGA-T--TCATCTTCACC 354 ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 293 TTCCTCATCTGCGTTTTCTCCACCGCCGACCAAATTCAGCTCCGATTCATCATCTTCACC 352 Query 355 GGCGGTGCAGAGAGCTTTTTCGTTTCCGACGCCGTTGGTTCACCATCCTCCGGCGAGAAA 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 353 GGCGGTGCAGAGAGCTTTTTCGTTTCCGACGCCGTTGGTTCACCATCCTCCGGCGAGAAA 412 Query 415 AGGCGACTCTCATCACCTTGTTTCCCTTACATCTACATCGTACGGTTCTCTTCTCCTCCT 474 ||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct 413 AGGCGACACTCATCACCTTGTCTCCCTCACATCTACGTCGTACGGTTCTCTTCTCCTCCT 472 Query 475 TGATCTCGATGGATCCAAAAACTCCTCTTCCGACCAACAAACGCTGCCTCGTATCTCAAT 534 ||||||||||||||||| |||| | | |||||||||||||||||||||||||||||||| Sbjct 473 CGATCTCGATGGATCCAATAACT-C-C-TCCGACCAACAAACGCTGCCTCGTATCTCAAT 529 Query 535 CTCCGGGAAGAACACACCAGATCCGGTCTCTCCTGATTCAGTCATAAACACTTGGGAGCT 594 |||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| Sbjct 530 CTCCGGGAAGAACACACCAGATCCGGTCTCTCCTGACTCCGTCATAAACACGTGGGAGCT 589 Query 595 TATGGATGGCTTGGACGATGAATTCGAATTCGAAATTCCCAAACCGGGTAAGCGTCTAAA 654 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 590 TATGGATGGCTTGGACGACGAATTCGAATTCGAAATTCCCAAACCTGGTAAGCGTCTAAA 649 Query 655 TTCGGATTTTTGCTCTAAACCCGACCCGAATCGGAATGTGAGTTTAAATGGGTCTTCGTT 714 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 650 TTCGGATTTTTGCTCTAAACCCGACCCGAATCGGAATGTGAGTTTAAATGGGTCTGCGTT 709 Query 715 GAAATTGGATGAATCTTACGAGATTGTGAGAATCGAAGAAGACGATGGAGATTGGGTTCC 774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 710 GAAATTGGATGAATCTTACGAGATTGTGAGAATCGAAGAAGACGATGGAGATTGGGTTCC 769 Query 775 TTTGACTTATAAACCTAAGCAACCTTTGTGGAAGCATTTGTCTGAAGAATCATTTCTCTC 834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 770 TTTGACTTATAAACCTAAGCAACCTTTGTGGAAGCATTTGTCTGAAGAATCATTTCTCTC 829 Query 835 TGATTTAGATCCCAGCATTGTCTCATCCTACAAGAAAGCTTTGTCTTCTAAGCTATTAAG 894 ||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| Sbjct 830 TGATTTAGATCCCAGCATTGTCTCATCTTACAAGAAAGCTTTGTCTTCCAAGCAATTAAG 889 Query 895 CAATCATAGTAATACTAGAAACCCTCATAGACCCACAAAGTCTCTCTCTTGTAGCCCATC 954 |||||||||||| ||||||||||||| |||||||||||| || ||||||||||||||||| Sbjct 890 CAATCATAGTAACACTAGAAACCCTCTTAGACCCACAAAATCCCTCTCTTGTAGCCCATC 949 Query 955 ATCAAATCCATCCATCTTAATAAGCGAAGAACCAAAATCTGTATCCTCTAGTCAATTGAT 1014 ||| | ||| | | ||| || |||||||||||||||||||||||||||||| |||| Sbjct 950 ATC----C-ATC--T-T-AATCAGTGAAGAACCAAAATCTGTATCCTCTAGTCAACTGAT 1000 Query 1015 TTCATCACCAG-CCAAACCGAGATTACCAGGAACAGAAGACAAGATTGTACTCTACTTCA 1073 |||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 1001 TTCATCAC-AGGCCAAACCGAGATTACCAGGGACAGAAGACAAGATTGTGCTCTACTTCA 1059 Query 1074 CAACCCTCAGAGGAATTCGAAAGACATACGAGGATTGTTGTTGCGTTAGAGCGATATTGA 1133 |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 1060 CAACCCTCCGAGGAATTCGAAAGACATACGAGGATTGCTGTTGCGTTAGAGCGATACTGA 1119 Query 1134 GAGGAG-TTCAAGTGTCCGTAGACGAACGTGACATCTCTATGGATTCCAAATACAGGAAA 1192 |||| | ||||||| | ||||||||||||||||||||||||||||| |||||||||||| Sbjct 1120 GAGG-GCTTCAAGTCACGGTAGACGAACGTGACATCTCTATGGATTCTAAATACAGGAAA 1178 Query 1193 GAGCTTCAAAGCGTGCTTGGCGCCGCAGAGAAACCGGTTTGTTTGCCTCAGGTGTTTATC 1252 ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1179 GAGCTTCAAAGTGTGCTTGTTGCCGCAGAGAAACCGGTTTGTTTGCCTCAGGTGTTTATC 1238 Query 1253 AGAGGAACTCACATTGGTGGCGTGGAGGAGATTATGCAGCTAAATGATGGTGGTGAATTA 1312 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1239 AGAGGAACTCACATTGGTGGCGTGGAGGAGATTATGCAGCTAAACGATGGTGGTGAATTA 1298 Query 1313 GCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGCCGGAGCTGTGGT 1372 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1299 GCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGCCGGAGCTGTGGG 1358 Query 1373 GATGCAAGGTTTGTGCCTTGTACTAACTGTGATGGTAGCACCAAAGTGTTTGAAGAACAA 1432 ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| Sbjct 1359 GATGCAAGGTTTGTGCCTTGTACTAACTGCGACGGAAGCACCAAAGTGTTTGAAGAACAA 1418 Query 1433 GATGAACGGTTTAAGCGGTGTCCTAAATGCAATGAGAATGGATTGGTGCGTTGTCGTGTG 1492 || |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 1419 GACGAACGGTTCAAGCGATGTCCTAAATGCAATGAGAATGGATTGGTGCGTTGTCGCGTG 1478 Query 1493 TGTTGTCTCTAAGTGATCAGTTTGATCAAAAGATGTGTGTGAGAAAGGGGA-TATAGATT 1551 |||||||||||||||||| ||||||||||||| |||| | | ||||||||| |||||||| Sbjct 1479 TGTTGTCTCTAAGTGATCTGTTTGATCAAAAGCTGTGCGGGTGAAAGGGGAATATAGATT 1538 Query 1552 GATTGACTAAACATGGTATTTGGTTAGTAATGTATATTCAAATAAGTAAGTTGGCTCAAG 1611 |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1539 GATTGACTAAACCTGGTATTTGGTTAGTAATGTATATTGAAATAAGTAAGTTGGCTCAAG 1598 Query 1612 CCTTTTATTATTTACTCT-T-ATGAGTTGTGTTCTTTTGTTCCATTTACGCTCTTGACCT 1669 |||||||| || ||||| | |||| |||||||||||||||||||||| | |||||| || Sbjct 1599 CCTTTTATG-TT-ACTCTCTTATGACTTGTGTTCTTTTGTTCCATTTATGTTCTTGATCT 1656 Query 1670 T-----TTGAACTAAATGATTCTTACTATA-TG-A--A---GTACATCAAATGGTAGATG 1717 | || ||||||||||||||||||||| | | | |||||| ||||| |||||| Sbjct 1657 TGACCCTTAAACTAAATGATTCTTACTATACTATATTATAAGTACATAAAATGTTAGATG 1716 Query 1718 ATGATTG 1724 ||||||| Sbjct 1717 ATGATTG 1723 > Ahg952326 jgi|Araly1|952326|scaffold_5900002.1 Length=256 Score = 375 bits (203), Expect = 4e-103 Identities = 232/246 (94%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 1299 ATGGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACAT 1358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACAT 60 Query 1359 GCCGGAGCTGTGGTGATGCAAGGTTTGTGCCTTGTACTAACTGTGATGGTAGCACCAAAG 1418 |||| |||||||| ||||||||||||||||||||||||||||| || || |||||||||| Sbjct 61 GCCGTAGCTGTGGGGATGCAAGGTTTGTGCCTTGTACTAACTGCGACGGAAGCACCAAAG 120 Query 1419 TGTTTGAAGAACAAGATGAACGGTTTAAGCGGTGTCCTAAATGCAATGAGAATGGATTGG 1478 |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| Sbjct 121 TGTTTGAAGAACAAGACGAACGGTTCAAGCGATGTCCTAAATGCAATGAGAATGGATTGG 180 Query 1479 TGCGTTGTCGTGTGTGTTGTCTCTAAGTGATCAGTTTGATCAAAAGATGTGTGTGAGAAA 1538 ||||||||||||||| | |||||||||||||| ||||||||||||| |||||| | |||| Sbjct 181 TGCGTTGTCGTGTGT-T-GTCTCTAAGTGATCTGTTTGATCAAAAGCTGTGTGGGTGAAA 238 Query 1539 GGGGAT 1544 |||||| Sbjct 239 GGGGAT 244 > Ahg912506 jgi|Araly1|912506|Al_scaffold_0001_2760 Length=234 Score = 359 bits (194), Expect = 4e-98 Identities = 219/231 (95%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 1301 GGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGC 1360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGC 60 Query 1361 CGGAGCTGTGGTGATGCAAGGTTTGTGCCTTGTACTAACTGTGATGGTAGCACCAAAGTG 1420 || |||||||| ||||||||||||||||||||||||||||| || || |||||||||||| Sbjct 61 CGTAGCTGTGGGGATGCAAGGTTTGTGCCTTGTACTAACTGCGACGGAAGCACCAAAGTG 120 Query 1421 TTTGAAGAACAAGATGAACGGTTTAAGCGGTGTCCTAAATGCAATGAGAATGGATTGGTG 1480 |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 121 TTTGAAGAACAAGACGAACGGTTCAAGCGATGTCCTAAATGCAATGAGAATGGATTGGTG 180 Query 1481 CGTTGTCGTGTGTGTTGTCTCTAAGTGATCAGTTTGATCAAAAGATGTGTG 1531 ||||||||||||| | |||||||||||||| ||||||||||||| |||||| Sbjct 181 CGTTGTCGTGTGT-T-GTCTCTAAGTGATCTGTTTGATCAAAAGCTGTGTG 229 > Ahg934956 jgi|Araly1|934956|scaffold_402944.1 Length=1267 Score = 357 bits (193), Expect = 2e-97 Identities = 365/446 (82%), Gaps = 20/446 (4%) Strand=Plus/Plus Query 1050 AAG-ACAAGATTGTACTCTACTTCACAACCCTCAGAGGAATTCGAAAGACATACGAGGAT 1108 ||| ||||||| ||| | |||||||| | ||||||||||||||||||||| || || ||| Sbjct 795 AAGAACAAGATAGTATTGTACTTCACTAGCCTCAGAGGAATTCGAAAGACGTATGAAGAT 854 Query 1109 TGTTGTTGCGTTAGAGCGATATTGAGAGGAG-TTCAAG-TGTCCGTAGACGAACGTGACA 1166 ||||||||||||||| ||||||||||||| | |||| | || | ||||| ||||| |||| Sbjct 855 TGTTGTTGCGTTAGAACGATATTGAGAGG-GTTTCAGGTTG-CGGTAGAGGAACGCGACA 912 Query 1167 TCTCTATGGATTCCAAATACAGGAAAGAGCTTCAAAGCGTGCTTGGCGCCGCAGAGAAAC 1226 |||| |||||||||||||| || |||||||||| || ||| || | |||||||| Sbjct 913 TCTCAATGGATTCCAAATATAGAAAAGAGCTTC--AGAATGC-ACTCGGTGAAGAGAAAC 969 Query 1227 CGGTTTGTTTGCCTCAGGTGTTTATCAGAGGAACTCA-CATTGGTGGCGTGGAGGAGATT 1285 ||||||||||||||||||||||||| ||||| || ||||||||| | |||||||| Sbjct 970 CGGTTTGTTTGCCTCAGGTGTTTATAAGAGGTG-TCCGCATTGGTGGAATTGAGGAGATC 1028 Query 1286 ATGC-AGCTAAATGATGGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGA 1344 | | | || || ||||| || ||| | ||||||||||| |||||||||||||||||||| Sbjct 1029 AAGATA-CTCAACGATGGAGGCGAACTGGCAGAGATGTTAAAAGATTTCCCTGCTTGTGA 1087 Query 1345 A-CGCTTGGG-GACATGCCGGA-GCTGTGGTGATGCAAGGTTTGTGCCTTGTACTAACTG 1401 | | | |||| | | ||| | | |||| || ||||||||||||||||| |||||||| || Sbjct 1088 ATC-CGTGGGAGCC-TGC-GAAAGCTGCGGGGATGCAAGGTTTGTGCCGTGTACTAATTG 1144 Query 1402 TGATGGTAGCACCAAAGTGTTTGAAGAACAAGATGAACGGTTTAAGCGGTGTCC-TAAAT 1460 || |||||| || ||||||||||| ||| |||| || |||||||| | || | | ||| Sbjct 1145 TGGTGGTAGTACTAAAGTGTTTGAGGAAAAAGAAGATGGGTTTAAGAGATG-CAATGAAT 1203 Query 1461 GCAATGAGAATGGATTGGTGCGTTGT 1486 ||||||||||||||||||| |||||| Sbjct 1204 GCAATGAGAATGGATTGGTACGTTGT 1229 Score = 189 bits (102), Expect = 6e-47 Identities = 273/349 (78%), Gaps = 37/349 (11%) Strand=Plus/Plus Query 563 TCTCCTGATTCAGTCATAAACACTTGGGAGCTTATGGATGGCTTGGACGATGAATTCGAA 622 |||||||| ||||| || ||||| |||||||| ||| | ||| | ||||| || |||| | Sbjct 318 TCTCCTGACTCAGTGATCAACACATGGGAGCTCATGAACGGCCTCGACGACGATTTCG-A 376 Query 623 TTC-GA-AATTCCCAAAC-CG---G-GTAA--GCGTC-TAAATTCGGATT-TTTGCTCTA 671 || || |||||| | || | | |||| |||| |||||| ||||| ||| |||| Sbjct 377 CTCTGAGAATTCCGATACAAGTAAGCGTAATTCCGTCGTAAATTTGGATTGTTT-TTCTA 435 Query 672 AACCCGA-CCCGAATCGGA-ATGTGAGTT-TAAATGGGTCTTCGTTGAAATTGGATGAAT 728 ||||| | | ||||| || | ||| ||| | ||||||||||||||||||||||| |||| Sbjct 436 AACCC-ATCAAGAATC-GAGACGTG-GTTATTAATGGGTCTTCGTTGAAATTGGACGAAT 492 Query 729 CTTACGAGATTGTGAGAATCGAAGAAGACGATGGAGATTGGGTTCCTTTGACTTATAAAC 788 ||||| || || | || ||||| |||||| || | || ||| ||||| Sbjct 493 CTTAC--GA-----AG-CT-GAGGAAGA--TTGGAGA-----TTAC--TGCCTTTTAAAC 534 Query 789 CTAAGCAACCTTTGTGGAAGCATTTGTCTGAAGAATCATTTCTCTCTGATTTAGATCCCA 848 ||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| | Sbjct 535 CTAAGCAACCTCTGTGGAAACATATGTCTGAAGAATCATTTCTCTCTGATTTAGATCCTA 594 Query 849 GCATTGTCTCATCCTACAAGAAAGCTTTGTCTTCTAAGCTATTAAGCAA 897 |||| ||||||| ||||||||||| ||||||||||||| | ||||||| Sbjct 595 ACATTATCTCATCTTACAAGAAAGCATTGTCTTCTAAGCAACTAAGCAA 643 > Ahg916008 jgi|Araly1|916008|Al_scaffold_0008_759 Length=234 Score = 353 bits (191), Expect = 2e-96 Identities = 218/231 (94%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 1301 GGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGC 1360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGC 60 Query 1361 CGGAGCTGTGGTGATGCAAGGTTTGTGCCTTGTACTAACTGTGATGGTAGCACCAAAGTG 1420 || |||||||| ||||||||||||||||||||||||||||| || || |||||||||||| Sbjct 61 CGTAGCTGTGGGGATGCAAGGTTTGTGCCTTGTACTAACTGCGACGGAAGCACCAAAGTG 120 Query 1421 TTTGAAGAACAAGATGAACGGTTTAAGCGGTGTCCTAAATGCAATGAGAATGGATTGGTG 1480 |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 121 TTTGAAGAACAAGACAAACGGTTCAAGCGATGTCCTAAATGCAATGAGAATGGATTGGTG 180 Query 1481 CGTTGTCGTGTGTGTTGTCTCTAAGTGATCAGTTTGATCAAAAGATGTGTG 1531 ||||||||||||| | |||||||||||||| ||||||||||||| |||||| Sbjct 181 CGTTGTCGTGTGT-T-GTCTCTAAGTGATCTGTTTGATCAAAAGCTGTGTG 229 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64677236010 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5