BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57090.1
Length=818
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938681 jgi|Araly1|938681|scaffold_502872.1 902 0.0
> Ahg938681 jgi|Araly1|938681|scaffold_502872.1
Length=554
Score = 902 bits (488), Expect = 0.0
Identities = 533/555 (96%), Gaps = 2/555 (0%)
Strand=Plus/Plus
Query 78 AAAGCTCAAAATCGCCTTCAATGGATGCTAAGATCGGACAATTCTTTGACTCCGTCGGTA 137
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAGCTCAAAATCGCCTTCAATGGATGCTAAGATCGGACAATTCTTTGACTCCGTCGGTT 60
Query 138 CTTTCTTCAGCGGCAGCGATAAGATCCCATGGTGCGACGGAGATGTCATCGCTGGATGTG 197
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 CCTTCTTCAGCGGCAGCGATAAGATCCCATGGTGCGACGGAGATGTCATCGCTGGGTGTG 120
Query 198 AAAGAGAGGTTCGAGAGGCCACAGATTCTGGCACTGAAGATCTTAAGAAAGAGTGCTTGA 257
|||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||
Sbjct 121 AAAGAGAGGTTCGAGAGGCCACAGATGCTGGCTCTGAAGATCTGAAGAAAGAGTGCTTGA 180
Query 258 TGCGATTGTCATGGGCCCTTGTTCATTCCCGTCAAACGGAAGATGTTCAACGTGGAATAG 317
|||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||
Sbjct 181 TGCGATTGTCGTGGGCTCTTGTTCATTCCCGTCAAACCGAAGATGTTCAACGCGGAATAG 240
Query 318 CCATGCTTGAAGCATCTCTGGAAAGCAGTGCCCCTCCATTGGAGGACCGAGAGAAGCTCT 377
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 241 CCATGCTTGAAGCATCTCTGGAAAGCAGTGCCCCTCCTTTAGAGGACCGAGAGAAGCTCT 300
Query 378 ATCTTCTTGCTGTTGGGTATTACAGAAGTGGGAATTACTC-AAGGAGCAGGCAGCTCGTG 436
|||||||||||||||| ||||||||||||||| | ||||| || ||||||||||||||||
Sbjct 301 ATCTTCTTGCTGTTGGATATTACAGAAGTGGGGACTACTCGAA-GAGCAGGCAGCTCGTG 359
Query 437 GACCGCTGTATCGAGATGCAAGCTGATTGGAGACAAGCTTTGGTCCTAAAGAAGACCATC 496
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GACCGCTGTATTGAGATGCAAGCTGATTGGAGACAAGCTTTGGTCCTAAAGAAGACCATC 419
Query 497 GAAGACAAAATCACAAAGGATGGTGTTATAGGGATAGGGATCACGGCTACAGCCTTTGGA 556
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 GAAGACAAAATCACAAAGGATGGTGTTATAGGGATAGGGATCACTGCTACAGCCTTTGGC 479
Query 557 GCTGTGGGTCTCATAGCCGGTGGTATCGTAGCAGCGATGTCTCGCAAGAAATGAAAACCA 616
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 480 GCCGTGGGTCTCATAGCCGGTGGTATCGTAGCAGCGATGTCTCGCAAAAAATGAAAACCA 539
Query 617 CAACCATGACTTCTT 631
|||||||||||||||
Sbjct 540 CAACCATGACTTCTT 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30231473181
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5