BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57240.1
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348799 jgi|Araly1|348799|fgenesh1_pg.C_scaffold_5002191 1447 0.0
> Ahg348799 jgi|Araly1|348799|fgenesh1_pg.C_scaffold_5002191
Length=960
Score = 1447 bits (783), Expect = 0.0
Identities = 903/961 (94%), Gaps = 7/961 (1%)
Strand=Plus/Plus
Query 101 TGGCTTCCTTCTTCGACACGGCAGTTGGACAAATCGGAGTGTGCTACGGGAGAAATGGAA 160
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2 TGGCTTCCTTCTTCGACACGGCAGTTGGGCAAATCGGAGTGTGCTACGGGAGAAATGGAA 61
Query 161 ACAACCTGCGACCCGCGTCCGAAGTCGTGGCGCTTTACCAACAACGGAACATCCGGCGGA 220
|||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 62 ACAACCTGCGTCCTGCGTCGGAAGTCGTGGCTCTTTACCAACAACGGAACATCCGGCGGA 121
Query 221 TGCGGCTGTACGATCCCAACCAGGAGACTCTCAACGCTCTCCGCGGCTCCAATATCGAGC 280
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TGCGGCTGTACGGTCCCAACCAGGAGACTCTCAACGCTCTCCGCGGCTCCAATATCGAGC 181
Query 281 TCGTGCTCGATGTTCCAAACCCTGATCTCCAGCGTCTCGCCTCCAGCCAAGCGGAAGCCG 340
||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 182 TCGTGCTCGATGTTCCAAACCCTGATCTCCAGCGTATTGCTTCCAGCCAAGCGGAAGCCG 241
Query 341 ACACATGGGTCCGCAACAACGTCCGCAACTATGCAAAC---GTCACATTTCGCTACATCT 397
|||| |||||| ||||||||||||| |||||||||||| |||| ||| ||||||||||
Sbjct 242 ACACGTGGGTCAGCAACAACGTCCGTAACTATGCAAACGGTGTCAGATTCCGCTACATCT 301
Query 398 CTGTCGGGAACGAGGTACAGCCCTCAGACCAAGCTGCGAGCTTTGTCCTCCCCGCGATGC 457
||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 302 CTGTCGGGAACGAGGTACAACCCTCAGACCAAGCCGCGAGGTTTGTCCTCCCCGCGATGC 361
Query 458 AGAACATAGAGAGAGCAGTTTCAAGCCTCGGGATCAAGGTCTCGACGGCTATAGACACCA 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 AGAACATAGAGAGAGCAGTTTCAAGCCTCGGGATCAAGGTCTCGACGGCTATAGACACCA 421
Query 518 GAGGCATTTCCGGGTTTCCGCCGTCAAGTGGGACGTTCACACCGGAGTTTAGGAGCTTTA 577
|||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct 422 GAGGAATTTCCGGGTTTCCACCGTCAAGTGGGACGTTCACACCGGAATTTAGGAACTTTA 481
Query 578 TCGCACCGGTGATAAGTTTCTTGTCAAGCAAGCAATCTCCTCTGCTCGTGAATAAT-TAC 636
|||||||||||||| |||||||| | ||||||||||||||||||||||||||| | |||
Sbjct 482 TCGCACCGGTGATAGGTTTCTTGGCGAGCAAGCAATCTCCTCTGCTCGTGAATC-TCTAC 540
Query 637 CCTTACTTCAGCTACACGGGAAACATGCGAGACATCCGGTTAGACTACACTCTGTTCACC 696
|||||||||||||| || ||||||||| |||||||||| |||||||||||||||||||||
Sbjct 541 CCTTACTTCAGCTATACAGGAAACATGAGAGACATCCGTTTAGACTACACTCTGTTCACC 600
Query 697 GCACCGTCAACTGTAGTCAATGACGGACAAAACCAATATCGAAACCTATTCCACGCAATC 756
||||| || ||||||||||||||||||||||||||||| ||||| || ||| | ||||||
Sbjct 601 GCACCATCCACTGTAGTCAATGACGGACAAAACCAATACCGAAATCTCTTCTATGCAATC 660
Query 757 TTAGACACTGTTTACGCATCATTAGAGAAAGCTGGAGGTGGTTC-GTTGGAGATCGTGGT 815
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 661 TTAGACACTGTTTACGCATCATTAGAGAAAGCTGGAGGTGGATCAGT-GGAGATCGTGGT 719
Query 816 GTCCGAGAGTGGTTGGCCGACAGCGGGAGGAGCAGCGACGGGTGTGGATAATGCGAGAAC 875
|||||||||||||||||||||||| |||||||| |||||| ||||||| |||||||| ||
Sbjct 720 GTCCGAGAGTGGTTGGCCGACAGCTGGAGGAGCCGCGACGAGTGTGGAGAATGCGAGGAC 779
Query 876 TTATGTGAACAATTTGATACAAACTGTGAAAAATGGATCTCCGAGGAGACCAGGGAGAGC 935
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 780 TTATGTGAACAATTTGATACAAACTGTGAAAAATGGATCTCCGAGAAGGCCAGGGAGAGC 839
Query 936 TACAGAGACTTATATATTTGCTATGTTCGATGAGAATTCGAAGCAGGGTCCCGAGACTGA 995
|| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||
Sbjct 840 TATAGAGACTTATATATTTGCTATGTTCGATGAGAATTTGAAGCAAGGTCCCGAGATTGA 899
Query 996 GAAGTTTTGGGGACTGTTTCTTCCAAATCTACAGCCTAAGTATGTTGTCAATTTCAACTA 1055
||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 900 GAAGTTTTGGGGACTTTTTCTTCCGAATCTACAGCCTAAGTATGGTGTCAATTTCAACTA 959
Query 1056 A 1056
|
Sbjct 960 A 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45938114985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5