BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G57320.1

Length=625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486174 jgi|Araly1|486174|fgenesh2_kg.5__2166__AT3G57320.1         529    1e-149


> Ahg486174 jgi|Araly1|486174|fgenesh2_kg.5__2166__AT3G57320.1
Length=538

 Score =  529 bits (286),  Expect = 1e-149
 Identities = 361/394 (92%), Gaps = 17/394 (4%)
 Strand=Plus/Plus

Query  68   TAACTATTCGGGAAGAGAGGTTTATGATTTGAGC-G--G-----A-AGCTG-CTG---AG  114
            ||| |||||||||||||||||||||||||||||| |  |     | ||||| |||   ||
Sbjct  1    TAATTATTCGGGAAGAGAGGTTTATGATTTGAGCGGAAGCCTCCACAGCTGCCTGCCTAG  60

Query  115  AGAGGAAAATCATGGAGGATCATCATCATCTTCCCGAGAATTTGAAACCCTTCTTTCACA  174
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  61   AGAGGAAAATCATGGAGGATCATCATCATCTTCCCGAGAATCTGAAACCCTTCTTTCACA  120

Query  175  GAGCCACTGAAGCTCAGGAGCGATTGGCTAAGCTTGAAGCTGCTCTTGCGTCGACCAAGA  234
            ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  121  GAGCCACCGAAGCTCAGGAGCGATTGGCTAGGCTTGAAGCTGCTCTTGCGTCGACCAAGA  180

Query  235  CAGACATTCCGGATGCTAAACTTGTGGAGGAAAACAAACA-ACTTCAGTCAAAGCTCGAA  293
            ||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||
Sbjct  181  CAGACATTCCGGATGCTAAACTTGTGGAGCAAAACAAACAGA-TTCAGTCAAAGCTCGAA  239

Query  294  GAAGCTAACGCCACTGTGAAGCAAGAACAGACTAAGGTGAAGGACTTGACCATTGAAAAC  353
            |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  240  GAAGCTAACGCCACGGTGAAGCAAGAACAGACTAAGGTGAAGGAGTTGACCATTGAAAAC  299

Query  354  GCCAAGCATAAGTACCGTATATTGCATCTTGTGCGGGC-TCTAAAGGATGCTGATCAGAA  412
            || ||||| ||||| ||||||||||||||||||||||| | ||| ||| || ||| ||||
Sbjct  300  GCGAAGCAAAAGTATCGTATATTGCATCTTGTGCGGGCGT-TAAGGGAAGCAGATGAGAA  358

Query  413  GCTTGAGAGGCTCTCTAAATGATTTCATTCTTCT  446
            ||||||||  ||||||||||||||||||||||||
Sbjct  359  GCTTGAGAAACTCTCTAAATGATTTCATTCTTCT  392



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22873750200


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5