BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G57320.1 Length=625 Score E Sequences producing significant alignments: (Bits) Value Ahg486174 jgi|Araly1|486174|fgenesh2_kg.5__2166__AT3G57320.1 529 1e-149 > Ahg486174 jgi|Araly1|486174|fgenesh2_kg.5__2166__AT3G57320.1 Length=538 Score = 529 bits (286), Expect = 1e-149 Identities = 361/394 (92%), Gaps = 17/394 (4%) Strand=Plus/Plus Query 68 TAACTATTCGGGAAGAGAGGTTTATGATTTGAGC-G--G-----A-AGCTG-CTG---AG 114 ||| |||||||||||||||||||||||||||||| | | | ||||| ||| || Sbjct 1 TAATTATTCGGGAAGAGAGGTTTATGATTTGAGCGGAAGCCTCCACAGCTGCCTGCCTAG 60 Query 115 AGAGGAAAATCATGGAGGATCATCATCATCTTCCCGAGAATTTGAAACCCTTCTTTCACA 174 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 61 AGAGGAAAATCATGGAGGATCATCATCATCTTCCCGAGAATCTGAAACCCTTCTTTCACA 120 Query 175 GAGCCACTGAAGCTCAGGAGCGATTGGCTAAGCTTGAAGCTGCTCTTGCGTCGACCAAGA 234 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 121 GAGCCACCGAAGCTCAGGAGCGATTGGCTAGGCTTGAAGCTGCTCTTGCGTCGACCAAGA 180 Query 235 CAGACATTCCGGATGCTAAACTTGTGGAGGAAAACAAACA-ACTTCAGTCAAAGCTCGAA 293 ||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||| Sbjct 181 CAGACATTCCGGATGCTAAACTTGTGGAGCAAAACAAACAGA-TTCAGTCAAAGCTCGAA 239 Query 294 GAAGCTAACGCCACTGTGAAGCAAGAACAGACTAAGGTGAAGGACTTGACCATTGAAAAC 353 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 240 GAAGCTAACGCCACGGTGAAGCAAGAACAGACTAAGGTGAAGGAGTTGACCATTGAAAAC 299 Query 354 GCCAAGCATAAGTACCGTATATTGCATCTTGTGCGGGC-TCTAAAGGATGCTGATCAGAA 412 || ||||| ||||| ||||||||||||||||||||||| | ||| ||| || ||| |||| Sbjct 300 GCGAAGCAAAAGTATCGTATATTGCATCTTGTGCGGGCGT-TAAGGGAAGCAGATGAGAA 358 Query 413 GCTTGAGAGGCTCTCTAAATGATTTCATTCTTCT 446 |||||||| |||||||||||||||||||||||| Sbjct 359 GCTTGAGAAACTCTCTAAATGATTTCATTCTTCT 392 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22873750200 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5