BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G57400.1 Length=1796 Score E Sequences producing significant alignments: (Bits) Value Ahg486184 jgi|Araly1|486184|fgenesh2_kg.5__2176__AT3G57400.1 2194 0.0 Ahg357492 jgi|Araly1|357492|fgenesh1_pg.C_scaffold_8001279 481 9e-135 Ahg359415 jgi|Araly1|359415|fgenesh1_pg.C_scaffold_205000001 464 9e-130 > Ahg486184 jgi|Araly1|486184|fgenesh2_kg.5__2176__AT3G57400.1 Length=1707 Score = 2194 bits (1188), Expect = 0.0 Identities = 1584/1756 (90%), Gaps = 103/1756 (6%) Strand=Plus/Plus Query 29 agagaaTGCTCTCAGTCTCAGCCTCTCCTCACCACCACTAACCCCAGAAGAATCCTCACA 88 ||||||||||||||||||||||||||| ||| || ||||| ||||||||||| || | Sbjct 1 AGAGAATGCTCTCAGTCTCAGCCTCTCTTCA-CA--ACTAA-CCCAGAAGAAT--TCTGA 54 Query 89 GACagagagagagagagagaATCAGAATGGGTTTGATATCAGCGAAAGAGACGAAG---A 145 || |||||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 55 GAGAGAGAGAGAGAGAGAGAATC--AATGGGTTTGATATCAGCGAAAGAGACGAAGAACA 112 Query 146 ACAACACTAGAGGAATGGGTTTGCTCTTAGTCTTCTTCCCCGACCACCACAACAACAACG 205 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 113 ACAACACTAGAGGAATGGGTTTGCTCTTAGTCTTCTTCCCCGACCACCACAACGACGAC- 171 Query 206 ACGAC-TC-TCcttcttcttcttcttcttctccggcaacaacaactctcttccgctccag 263 | | || ||| ||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 172 TCTCCTTCTTCC-TCTTCCTCTTCTTCTTCTCCGG---CAACAACTCTCTTCCGCTCCAG 227 Query 264 atcttctcgtcttctcctctccaaagctcaatccacaatctcaatctgcatcctcctcct 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 228 ATCTTCTCGTCTTCTCCTCTCCAAAGCTCAATCCACAATCTCAATCTGCATCCTCCTCCT 287 Query 324 cttcctcactctcttcctcttcactctctccaccttcgaaccttcctctGGCTTTCCCGC 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 288 CTTCCTCACTCTCTTCCTCTTCACTCTCTCCACCTTCGAACCTTCCTCTGGCTTTCCCGC 347 Query 384 CGTTTCTTCTTCTCGTCCTCACCGTCGATTTCTCCTCAACCGCGACATCTCCGCCTCTTC 443 || | |||||||||||||||||| |||||||||||||| ||||||||||||| | || Sbjct 348 CG--T-TTCTTCTCGTCCTCACCGCCGATTTCTCCTCAATCGCGACATCTCCG--GC-TC 401 Query 444 TGAATCTCGTCGTCGTTATAACCGATTCGCTCTCCAAGGTATGGGTACTCTGTTTCTCAG 503 ||||||||||||||||||||||||||||||||| || || |||||||||||||||||||| Sbjct 402 TGAATCTCGTCGTCGTTATAACCGATTCGCTCTGCAGGGAATGGGTACTCTGTTTCTCAG 461 Query 504 AGGAACCAAGAGCATGCACGATTTGATTGTTGTTCATATCTCTTCCGATACTACGGAAGA 563 |||||||||||||||||||||||||||||||| |||| | |||||||||| |||||||| Sbjct 462 AGGAACCAAGAGCATGCACGATTTGATTGTTGCTCATGTAGCTTCCGATACGACGGAAGA 521 Query 564 CGATCTCCGTCTCTTCATGCGCTTGATCCACCGCTCCGGTGTCACTTCCAAATCCGACGT 623 ||||||||||||||||||||| ||| | ||||||||||| |||||||||||||||||||| Sbjct 522 CGATCTCCGTCTCTTCATGCGGTTGCTTCACCGCTCCGGAGTCACTTCCAAATCCGACGT 581 Query 624 CGTTTTACTCTTCAATTCGGGTACGAGATTCACT-GAAATGATCGAAGAAGAGAACGACT 682 |||| ||||||||||||||||| |||||||| | ||| ||||||||||||||||||||| Sbjct 582 CGTTCTACTCTTCAATTCGGGTTCGAGATTC-GTCGAATTGATCGAAGAAGAGAACGACT 640 Query 683 CGTTCTTAAAACTCGTTGATGTTCATC-G-----GAATTCGTCGAATCAAATCGACTCCG 736 | ||||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 641 CCTTCTTAAAACTCGTTGATGTTCATCGGAATTCGAATTCGTCGAATCAAATCGACTCCG 700 Query 737 TTTGGGGATTTAATCTCACGAAATTCATGAAGAAGCAAT----C------GA-A-ATCAT 784 |||||||||||||||| ||||||||||||||||||||| | || | ||||| Sbjct 701 TTTGGGGATTTAATCTGGCGAAATTCATGAAGAAGCAATGGAGCAAGAAGGAGACATCAT 760 Query 785 CATCGTC-T--GAGCCAATTTGGGGGAAGAAGACGCATCGAGC---TAATTACAACGATA 838 ||||||| | ||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct 761 CATCGTCATCAGAGCCAATTTGGGGGAAGAAGACTCATCGAGCGAATAATTTCAACGATT 820 Query 839 CGTCGTCGTTGAATAACTCGACCGAGTCAACCGAGTTGTTGACACATGGCTCAGTAGTGG 898 ||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 821 CGTCGTCATTGAACAACTCGACCGAGTCAACCGAGTTGTTGACTCATGGCTCAGTAGTGG 880 Query 899 GTTTCGACGTGACTGAGTTGGATCCTGAAAACTCGCTATCCGGGTTTATGGATCACGTTC 958 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 881 GTTTCGACGTGACTGAGCTGGATCCTGAAAACTCGCTATCCGGGTTTATGGATCACGTTC 940 Query 959 CGATAAGTTTGAGAAGATGGGCGTGTTACCCAATGCTGCTAGGTCGAGTAAGACGCAATT 1018 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 941 CGATAAGCTTGAGAAGATGGGCGTGTTACCCAATGCTGCTAGGTCGAGTAAGGCGCAATT 1000 Query 1019 TCAAACACGTTATGCTCGTGGACGCTAAAACCTCCTTGTTCCTCGGTGACCCGCTAACCC 1078 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 1001 TCAAACACGTTATGCTCGTGGACGCTAAAACCTCCTTGTTCCTCGGTGACCCGTTAGCCC 1060 Query 1079 GGATTCGTAACCGGAGCCTTGAGTCAGTCCTCTTCTTCTCTAAACACAGTAGTAGTAGCA 1138 |||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| Sbjct 1061 GGATTCGTAACCGGAGCCCCGAGTCAGTCCTCTTCTTCTCTAAACAC---ACTAGTAGCA 1117 Query 1139 AGAAAAGCTCCGAGGTTAATCCGGCGATTCTGATCGGTGGAGCTAAAGGAATCAGGAGGT 1198 ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 1118 AGAAAAGCTCCGACGTTAATCCGGCGATTTTGATCGGTGGAGCTAAAGGAATCAGGAGAT 1177 Query 1199 TATCGAGCTCGATGCACACTGAGATCGTGAGAGCGACGATTCAGCAGCAGCATAAGAAGA 1258 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1178 TATCGAGCTCGATGCACACTGAGATTGTGAGAGCGACGATTCAGCAGCAGCATAAGAAGA 1237 Query 1259 AGAACTCGGTTACGGAATCGGTGGTGT-TGAGCCAACTCGTTGGGAATGTTCACATGACG 1317 ||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| Sbjct 1238 AGAACTCGGTTACGGAATCGGTGGT-TCTGAGTCAACTCGTTGGGAATGTTCACATGACG 1296 Query 1318 AAGAATTTTGAAGTGGTTACGAGTGAGTCGGTGGTACCGGAAGCGAGTTCACTGGCTGAG 1377 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1297 AAGAATTTTGAGGTGGTTACGAGTGAGTCGGTGGTACCGGAAGCGAGTTCACTGGCTGAG 1356 Query 1378 TTAAGGACGAGAAACTCGGCGGCTTCGTCGATAAAGAATCATGATATAATACAAAGAGGT 1437 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 1357 TTAAGGACGAGAAACTCGGCGGCTTCGTCGATGAAGAATCATGATATAATACAACGAGGT 1416 Query 1438 GGTGGTAATAGTAATAGTAATCATATTATTGATATTATGGCGATTATTATGAAACGTATT 1497 ||| | |||||||||||| |||||||||| |||||||||||||||||| Sbjct 1417 GGT-G-----GTAATAGTAATC---------ATATTATGGCTATTATTATGAAACGTATT 1461 Query 1498 TGTTCTTGTGAATTAGATTCTTCTGTTTATAATTACTGTTAGCATTATTTTAAAAGAGTT 1557 ||||||||||||||||||||||||| | ||| || |||| | | | Sbjct 1462 TGTTCTTGTGAATTAGATTCTTCTG----T--TTA----TA--ATTA--CT------G-T 1500 Query 1558 TACGAAACaaaaaaaaTAGGGAAAattttaatttatttgtttgaaagttttgtacacatt 1617 || | |||||||||||| ||||||| |||| | |||| || | ||||||||||||| Sbjct 1501 TA-G-----AAAAAAATAGGG-AAATTTTTATTT-TGTGTTCGAGATTTTTGTACACATT 1552 Query 1618 tgacatttgttatgttctttagatttttgatttttcacagatgtttttattaGTGTGTCC 1677 |||||||||||||||| |||||||||||||||||||| |||| || ||||||||||||| Sbjct 1553 TGACATTTGTTATGTT-GTTAGATTTTTGATTTTTCACGGATG-TTCTATTAGTGTGTCC 1610 Query 1678 ACGTTCTGTATTCATTATTGATTTGGTCTCCTTCGAAATAATCATTTGATAAAATCAGCA 1737 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 1611 ACG--ATGTATTCATTATTGATTTGGTCTCCTTCGATATAATCATTTGATAAAATCAGGA 1668 Query 1738 AAATACCATTATTTTT 1753 |||||| ||| ||||| Sbjct 1669 AAATACGATTGTTTTT 1684 > Ahg357492 jgi|Araly1|357492|fgenesh1_pg.C_scaffold_8001279 Length=594 Score = 481 bits (260), Expect = 9e-135 Identities = 394/454 (87%), Gaps = 28/454 (6%) Strand=Plus/Plus Query 876 GTTGACACATGGCTCAG-TAGTGGGTTTCGACGTGACTGAGTTGGATCCTGAAAACTCGC 934 |||||| |||| ||| | ||||||||||||||||||||||||||||| |||||||||||| Sbjct 153 GTTGACTCATGTCTC-GATAGTGGGTTTCGACGTGACTGAGTTGGATACTGAAAACTCGC 211 Query 935 TATCCGGGTTTATGGATCACGTTCCGATAAGTTTGAGAAGATGGGCGTGTTACCCAATGC 994 ||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||| Sbjct 212 TATCCGGGTTTATGGATCAAGTTCCGATAAGCTTGAGGAGATGGGCTTGTTACCCAATGC 271 Query 995 TGCTAGGTCGAGTAAGACGCAATTTCAAACACGTTATGCTCGTGGACGCTAAAACCTCCT 1054 |||| ||| ||||||| |||| |||||||||||||||||| || |||||||||||||| | Sbjct 272 TGCTTGGTAGAGTAAGTCGCAGTTTCAAACACGTTATGCTTGTCGACGCTAAAACCTCAT 331 Query 1055 TGTTCCTCGGTGACCCGCTAACCCGGATTCGTAACCGGAGCCTTGA-GTCAGTCCTCTTC 1113 ||||| ||||||||||| |||||||||||||||||||||||| || || |||||||||| Sbjct 332 TGTTCATCGGTGACCCGTTAACCCGGATTCGTAACCGGAGCCCCGACGT-AGTCCTCTTC 390 Query 1114 TTCT-CTAAACACAGTAGTAGTAGCAAGAAAAGC-TCCGAGGTTAATCCGGCGATTCTGA 1171 |||| || || | | | || ||||||| || ||||||||||||||||||||| ||| Sbjct 391 TTCTACT---CA-A--A--A-TA-CAAGAAA-GCCTCCGAGGTTAATCCGGCGATTTTGA 439 Query 1172 TCGGTGGAGCTAAAGGAATCAGGAGGTTATCGAGCTCGATGCACACTGAGATCGTGAGAG 1231 ||||||||||||||||||||||||| ||||||||||| ||||| ||| |||| ||||||| Sbjct 440 TCGGTGGAGCTAAAGGAATCAGGAGATTATCGAGCTCCATGCATACTCAGATTGTGAGAG 499 Query 1232 C--GA-CGATT-CAGC-A-GCA-GCAT-AAGAAGAAGAACTCGGTTACGGAATCGGTGGT 1283 | || | | | || | | | | | || |||||||||||||| |||||||||||||| || Sbjct 500 CAAGAGCAAGTGCAACGATG-ATG-ATCAAGAAGAAGAACTCAGTTACGGAATCGGTTGT 557 Query 1284 GTTGAGCCAACTCGTTGGGAATGTTC-ACATGAC 1316 |||||| ||||||||||||||| ||| | ||||| Sbjct 558 GTTGAGTCAACTCGTTGGGAATTTTCCATATGAC 591 > Ahg359415 jgi|Araly1|359415|fgenesh1_pg.C_scaffold_205000001 Length=594 Score = 464 bits (251), Expect = 9e-130 Identities = 391/454 (86%), Gaps = 28/454 (6%) Strand=Plus/Plus Query 876 GTTGACACATGGCTCAG-TAGTGGGTTTCGACGTGACTGAGTTGGATCCTGAAAACTCGC 934 |||||| |||| ||| | ||||||||||||||||||||||||||||| |||||||||||| Sbjct 153 GTTGACTCATGTCTC-GATAGTGGGTTTCGACGTGACTGAGTTGGATACTGAAAACTCGC 211 Query 935 TATCCGGGTTTATGGATCACGTTCCGATAAGTTTGAGAAGATGGGCGTGTTACCCAATGC 994 ||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||| Sbjct 212 TATCCGGGTTTATGGATCAAGTTCCGATAAGCTTGAGGAGATGGGCTTGTTACCCAATGC 271 Query 995 TGCTAGGTCGAGTAAGACGCAATTTCAAACACGTTATGCTCGTGGACGCTAAAACCTCCT 1054 |||| ||| ||||||| |||| |||||||||||||||||| || |||||||||||||| | Sbjct 272 TGCTTGGTAGAGTAAGTCGCAGTTTCAAACACGTTATGCTTGTCGACGCTAAAACCTCAT 331 Query 1055 TGTTCCTCGGTGACCCGCTAACCCGGATTCGTAACCGGAGCCTTGA-GTCAGTCCTCTTC 1113 ||||| ||||||||||| |||||||||||||||||||||||| || || || ||||||| Sbjct 332 TGTTCATCGGTGACCCGTTAACCCGGATTCGTAACCGGAGCCCCGACGT-AGCCCTCTTC 390 Query 1114 TTCT-CTAAACACAGTAGTAGTAGCAAGAAAAGC-TCCGAGGTTAATCCGGCGATTCTGA 1171 || | || || | | | | ||||||| || ||||||||||||||||||||| ||| Sbjct 391 TTGTACT---CA-A--A--AC-A-CAAGAAA-GCCTCCGAGGTTAATCCGGCGATTTTGA 439 Query 1172 TCGGTGGAGCTAAAGGAATCAGGAGGTTATCGAGCTCGATGCACACTGAGATCGTGAGAG 1231 ||||||||||||||||||||||||| ||||||||||| ||||| ||| |||| ||||||| Sbjct 440 TCGGTGGAGCTAAAGGAATCAGGAGATTATCGAGCTCCATGCATACTCAGATTGTGAGAG 499 Query 1232 C--GA-CGATT-CAGC-A-GCA-GCAT-AAGAAGAAGAACTCGGTTACGGAATCGGTGGT 1283 | || | | | || | | | | | || |||||||||||||| |||||||||||||| || Sbjct 500 CAAGAGCAAGTGCAACGATG-ATG-ATCAAGAAGAAGAACTCAGTTACGGAATCGGTTGT 557 Query 1284 GTTGAGCCAACTCGTTGGGAATGTTC-ACATGAC 1316 |||||| ||||||||||||||| ||| | ||||| Sbjct 558 GTTGAGTCAACTCGTTGGGAATTTTCCATATGAC 591 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67419733650 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5