BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57540.1
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486202 jgi|Araly1|486202|fgenesh2_kg.5__2194__AT3G57540.1 1687 0.0
Ahg483270 jgi|Araly1|483270|fgenesh2_kg.4__2330__AT2G41870.1 320 1e-86
> Ahg486202 jgi|Araly1|486202|fgenesh2_kg.5__2194__AT3G57540.1
Length=1154
Score = 1687 bits (913), Expect = 0.0
Identities = 1084/1164 (93%), Gaps = 22/1164 (2%)
Strand=Plus/Plus
Query 1 GTTACACGAATTATTAAAACCTAATCATTGATTATTTATTCCTGACCTTGTTTCTTCTCC 60
|||||||||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||
Sbjct 1 GTTACACGAATTATTAAATCCTAATCATTGATTATTTATGCCTTACCTTGTATCTTCTCC 60
Query 61 TTCCATCACCTAATTATAATCAGACCTAAACTAGCTAATTACAACACTCCactact-act 119
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||
Sbjct 61 TTCCATCACCTAATTATAATCAGACCTAAACTATCTAATTGCAACACTCCACTACTAACT 120
Query 120 actactacAACTCTTCTGATGTTGACTTTGTACGGTCAAGAAAGGTCACCGGAGAACTCC 179
||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 121 ACTACTACAACCCTTCTGATGTTGACTTTGTACGGTCAAGAAAGTTCAACGGAGAACTCC 180
Query 180 ACCACAAGTACGACCGATGCTTCCGATCGCCGGGATGAGACGCCGTCGTCGGAGATAGTC 239
|||||||||||| |||||||||||||||||||||||||||| ||| ||||||| | |||
Sbjct 181 ACCACAAGTACGGCCGATGCTTCCGATCGCCGGGATGAGACACCGCCGTCGGAAACCGTC 240
Query 240 GTGAGAGATATTCACGCGATGACGACGACGACAGAGCTTACTCGGCCACAACAAAGGGGA 299
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 241 GTGAGAGATATTCACGCGATGACAACGACGACGGAGCTTACTCGGCCACAACAAAGGGG- 299
Query 300 TCAGGAGGAGGATACTTGTCTCCGTCGAGGTCTATTGCTTTTAGCGACGGAACTACTTCT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 --AGGAGGAGGATACTTGTCTCCGTCGAGGTCTATTGCTTTTAGCGACGGAACTACTTCT 357
Query 360 TCCGGTGAGAATTTCACCACCGTGAGCAGAGAGTTCAACGCTCTAGTCATCGCCGGATCT 419
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 358 TCCGGTGAGAATTTCACCACCGTGAGCAGAGAATTCAACGCTCTAGTTATCGCCGGATCT 417
Query 420 TCCATGGACAACAACAGTAACGGAACTAACCAATCAGGTGGTCATCGTGACGTCATACGT 479
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 418 TCCATGGACAACAACAGTAACGGAAGTAACCAGTCAGGTGGTCATCGTGACGTCATACGT 477
Query 480 GATGAAAGAAACGAGCTGACTAGGATCGGCGAAAACGATGACGTTGGTGATCATGGTCAG 539
|| ||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 478 GACGAAAGGAACGAGCTGACTAGGATCGGCGAAAACGATGACGTTGGTTATCATGATCAG 537
Query 540 GTGCCTGAGGAGGATTCAAATCCATGGGCGATTGTACCGGACGATTACAACAACCGGGAC 599
||||||||||| ||| | ||||| ||||||||||||||||||| |||||| ||||||||
Sbjct 538 GTGCCTGAGGAAGATACGAATCCTTGGGCGATTGTACCGGACGGTTACAATAACCGGGAT 597
Query 600 GGTTCAGAGAATAATATTGTGTTG--G-CGTCATCAGGTGGTCAGAACCGGATGGTGACG 656
||||| |||||||||||||||||| | ||||||| ||||||||||| ||||||||||||
Sbjct 598 GGTTCTGAGAATAATATTGTGTTGACGTCGTCATCGGGTGGTCAGAATCGGATGGTGACG 657
Query 657 ACTGCTTCGGTGCAGAGGGTGAAGAGAGAAGAGGTGGAAGCAAAGATAACGGCGTGGCAA 716
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 658 ACTGCTTCGGTGCAGAGGGTGAAGAGAGAAGAGGTGGAAGCGAAGATAACGGCGTGGCAA 717
Query 717 ACGGCGAAGGTGGCTAAGATTAATAATAGGTTTAAGAGACAAGACGCCGTTATTAACGGT 776
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ACGGCGAAAGTGGCTAAGATTAATAATAGGTTTAAGAGACAAGACGCCGTTATTAACGGT 777
Query 777 TGGTTGAATGAGCAGGTTCATAGAGCTAACTCTTGGATGAAGAAAATCGAGAGGAAACTG 836
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 778 TGGTTGAATGAGCAGGTTCATAAAGCTAACTCTTGGATGAAGAAAATCGAGAGGAAATTG 837
Query 837 GAAGATAGGAGAGCGAAGGCGATGGAGAAAACACAAAACAAAGTGGCAAAAGCTCAGAGG 896
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 838 GAAGATAGGAGAGCAAAGGCGATGGAGAAAACACAAAACAAAGTGGCAAAAGCTCAAAGG 897
Query 897 AAGGCGGAGGAGAGGAGAGCCACGGCGGAAGGTAAACGAGGGACGGAGGTTGCGAGGGTT 956
|||||||||||||||||||| ||||| ||||| ||| ||||||||||||||||||||||
Sbjct 898 AAGGCGGAGGAGAGGAGAGCGACGGCAGAAGGAAAAAGAGGGACGGAGGTTGCGAGGGTG 957
Query 957 CTTGAAGTTGCTAATCTCATGAGAGCCGTTGGACGACCTCCGGCCAAACGATCATTCTTC 1016
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 958 CTTGAAGTCGCTAATCTAATGAGAGCCGTGGGACGACCTCCGGCCAAACGATCCTTCTTC 1017
Query 1017 TCTCTT-TCCTAGCTAAGCTATTACTAGTTTTAGTTACATCCAAATGTCTCAATATATAT 1075
|| || |||||||||||||||| ||||||||| ||||||| |||| ||| |||||||||
Sbjct 1018 ACT-TTCTCCTAGCTAAGCTATTGCTAGTTTTAATTACATCAAAATTTCTTAATATATAT 1076
Query 1076 AGGCT--A--C---CATTTTCTGTTGGGAATCAATGTGTATATAACTATATATAGAATGT 1128
||||| | | ||||||||| ||||||||||||||| |||| |||| ||||||
Sbjct 1077 AGGCTGCAAACGGACATTTTCTGATGGGAATCAATGTGTGTATA--TATA----GAATGT 1130
Query 1129 AAGAGTTTTAAAGGTACTGATATA 1152
||||||||||||||||||||||||
Sbjct 1131 AAGAGTTTTAAAGGTACTGATATA 1154
> Ahg483270 jgi|Araly1|483270|fgenesh2_kg.4__2330__AT2G41870.1
Length=1374
Score = 320 bits (173), Expect = 1e-86
Identities = 305/369 (83%), Gaps = 8/369 (2%)
Strand=Plus/Plus
Query 664 CGGTGCAGAGGGTGAAGAGAGAAGAGGTGGAAGCAAAGATAACGGCGTGGCAAACGGCGA 723
||||||| | |||||||| |||||||| || || ||||||||||||||||| ||||| |
Sbjct 856 CGGTGCAAATAGTGAAGAGGGAAGAGGTTGAGGCGAAGATAACGGCGTGGCAGACGGCAA 915
Query 724 AGGTGGCTAAGATTAATAATAGGTTTAAGAGACAAGACGCCGTTATTAACGGTT-GGTTG 782
| |||| ||||| ||||| ||||||||||| ||||| ||||||||||||||| ||||
Sbjct 916 AATTGGCAAAGATCAATAACAGGTTTAAGAGGGAAGACACCGTTATTAACGGTTGGGTT- 974
Query 783 AATGAGCAGGTTCA-TAGAGCTAACTCTTGGATGAAGAAAATCGAGAGGAAACTGGAAGA 841
||||| || || || || || || ||||||||||||||||| |||||||| || || ||
Sbjct 975 AATGAACAAGTCCACAAG-GCCAATTCTTGGATGAAGAAAATTGAGAGGAAGCTAGAGGA 1033
Query 842 TAGGAGAGCGAAGGCGATGGAGAAAACACAAAACAAAGTGGCAAAAGCTCAGAGGAAGGC 901
| | ||| || || ||||||||||| |||||||| ||||| ||||| |||||||| ||
Sbjct 1034 GAAAAAAGCAAAAGCAATGGAGAAAACGCAAAACAATGTGGCGAAAGCGCAGAGGAAAGC 1093
Query 902 GGAGGAGAGGAGAGCCACGGCGGAAGGTAAA-CGAGGGACGGAGGTTGCGAGGGTTCTTG 960
||| ||||| | ||| ||||| | ||| ||| ||||||| |||||||| | || |||
Sbjct 1094 GGAAGAGAGAAAAGCGACGGCAG-AGGCAAAGAGAGGGACAGAGGTTGCAAAAGTAGTTG 1152
Query 961 AAGTTGCTAATCTCATGAGAGCCGTTGGACGACCTCCGGCCAAACGATCATTCTTCTCTC 1020
||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||
Sbjct 1153 AAGTTGCTAATCTCATGAGAGCCGTTGGACGTCCTCCTGCCAAACGCTCCTTCTTCTCT- 1211
Query 1021 TT-TCCTAG 1028
|| ||||||
Sbjct 1212 TTCTCCTAG 1220
Score = 91.6 bits (49), Expect = 1e-17
Identities = 69/79 (87%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 355 CTTCTTCCGGTGAGAATTTCACCACCGTGAGCAGAGAGTTCAACGCTCTAGTCATCGCCG 414
|||||||||| || || ||||| || | |||||||||||||||||||||||||||||||
Sbjct 592 CTTCTTCCGGCGAAAACTTCACAACAATAAGCAGAGAGTTCAACGCTCTAGTCATCGCCG 651
Query 415 GATCTTCCATGGACAACAA 433
| || |||||||| |||||
Sbjct 652 GCTCCTCCATGGAAAACAA 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46853064993
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5