BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G57650.1 Length=1749 Score E Sequences producing significant alignments: (Bits) Value Ahg938748 jgi|Araly1|938748|scaffold_502939.1 1958 0.0 > Ahg938748 jgi|Araly1|938748|scaffold_502939.1 Length=1216 Score = 1958 bits (1060), Expect = 0.0 Identities = 1151/1195 (96%), Gaps = 6/1195 (1%) Strand=Plus/Plus Query 245 ATGGTGATTGCTGCAGCTGTCATCGTGCCTTTGGGCCTTCTCTTCTTCATATCTGGTCTC 304 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 21 ATGGTGCTTGCTGCAGCTGTCATCGTGCCTTTGGGCATTCTCTTCTTCATATCTGGTCTC 80 Query 305 GCTGTCAATCTCTTTCAGGCAGTTTGCTATGTACTCATTCGACCACTGTCTAAGAACACA 364 | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 81 GTTGTCAATCTCTTTCAGGCAGTTTGCTATGTACTCATTCGGCCACTGTCTAAGAACACA 140 Query 365 TACAGAAAAATTAACCGGGTGGTTGCAGAAACCTTGTGGTTGGAGCTTGTATGGATAGTT 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 141 TACAGAAAAATTAACCGGGTGGTTGCAGAAACCTTGTGGTTGGAGCTTGTATGGATAGTT 200 Query 425 GACTGGTGGGCTGGAGTTAAGATCCAAGTGTTTGCTGATAATGAGACCTTCAATCGAATG 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 201 GACTGGTGGGCTGGAGTTAAGATCCAAGTGTTTGCTGATAATGAGACCTTCAATCGAATG 260 Query 485 GGCAAAGAACATGCTCTTGTCGTTTGTAATCACCGAAGTGATATTGATTGGCTTGTGGGA 544 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 261 GGCAAAGAACACGCTCTTGTCGTATGTAATCACCGAAGTGATATTGATTGGCTTGTGGGA 320 Query 545 TGGATTCTGGCTCAGCGGTCAGGTTGCCTGGGAAGCGCATTAGCTGTAATGAAGAAGTCT 604 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 321 TGGGTTCTGGCTCAGCGGTCAGGTTGCCTGGGAAGCGCATTAGCTGTAATGAAGAAGTCT 380 Query 605 TCCAAATTCCTTCCAGTCATAGGCTGGTCAATGTGGTTCTCGGAGTATCTCTTTCTGGAA 664 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 381 TCCAAATTCCTTCCAGTCATAGGCTGGTCAATGTGGTTCTCGGAGTATCTGTTTCTGGAA 440 Query 665 AGAAATTGGGCCAAGGATGAAAGCACTCTAAAGTCAGGTCTTCAGCGCTTGAGCGACTTC 724 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 441 AGGAATTGGGCCAAGGATGAAAGCACTCTAAAGTCAGGTCTTCAGCGCTTGAGTGACTTC 500 Query 725 CCTCGACCTTTCTGGTTAGCCCTTTTTGTGGAGGGAACTCGCTTTACAGAAGCCAAACTT 784 ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| Sbjct 501 CCTCGACCTTTCTGGTTAGCCCTTTTTGTGGAGGGAACTCGATTTACAGAGGCTAAACTT 560 Query 785 AAAGCCGCACAAGAGTATGCAGCCTCCTCTGAATTGCCTATCCCTCGAAATGTGTTGATT 844 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 561 AAAGCCGCACAAGAGTATGCAGCATCCTCTGAATTGCCTATCCCTCGAAATGTGTTGATT 620 Query 845 CCTCGCACCAAAGGTTTCGTGTCAGCTGTTAGTAATATGCGTTCATTTGTCCCAGCAATT 904 ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||| Sbjct 621 CCTCGCACCAAAGGTTTTGTGTCAGCTGTTAGTAATATGCGCTCGTTTGTCCCAGCCATT 680 Query 905 TATGATATGACAGTGACTATTCCAAAAACCTCTCCACCACCCACGATGCTAAGACTATTC 964 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 681 TATGATATGACAGTGACTATTCCAAAAACTTCTCCACCACCCACGATGCTAAGACTATTC 740 Query 965 AAAGGACAACCTTCAGTGGTGCATGTTCACATCAAGTGTCACTCGATGAAAGACTTACCT 1024 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 741 AAAGGACAACCTTCTGTGGTGCATGTTCACATCAAGTGTCACTCAATGAAAGACTTGCCT 800 Query 1025 GAATCAGATGACGCAATTGCACAGTGGTGCAGAGATCAGTTTGTGGCTAAGGATGCTCTG 1084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 801 GAATCAGATGACGCAATTGCACAGTGGTGCAGAGATCAGTTTGTGGCTAAGGATGCTCTG 860 Query 1085 TTAGACAAACACATAGCTGCAGACACTTTCCCCGGTCAACAAGAACAGAACATTGGCCGT 1144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 861 TTAGACAAACACATAGCTGCAGACACTTTCCCCGGTCAACAAGAACAGAACATTGGCCGT 920 Query 1145 CCCATAAAGTCCCTTGCGGTGGTTCTATCATGGGCATGCGTACTAACTCTTGGAGCAATA 1204 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 921 CCCATAAAGTCCCTTGCAGTGGTTCTATCATGGGCATGCGTACTAACTCTTGGAGCAATA 980 Query 1205 AAGTTCCTACACTGGGCACAACTCTTTTCTTCATGGAAAGGTATCACGATATCGGCGCTT 1264 ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| | Sbjct 981 AAGTTCCTACACTGGGCACAACTCTTTTCCTCATGGAAAGGTATCACGCTATCGGCGGTC 1040 Query 1265 GGTCTAGGTATCATCACTCTCTGTATGCAGATCCTGATACGCTCGTCTCAGTCAGAGCGT 1324 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1041 GGTCTAGGTATCATCACTCTATGTATGCAGATCCTGATACGCTCGTCTCAGTCAGAGCGT 1100 Query 1325 TCGACCCCAGCCAAAGTCGTCCCAGCCAAGCCAAAAGACAATCACCAC-C----C-AGAA 1378 ||||||||||| ||||| || |||||||||||||||||| |||||||| | | |||| Sbjct 1101 TCGACCCCAGCTAAAGTTGTTCCAGCCAAGCCAAAAGACCATCACCACTCAGAACCAGAA 1160 Query 1379 TCATCCTCCCAAACAGAAACGGAGAAGGAGAAGTAAAAACTGGTTCTCACAGATC 1433 |||||||||||||||||| ||||||| || |||| || |||||||||||||||| Sbjct 1161 CCATCCTCCCAAACAGAAATGGAGAAGCAGGAGTAGAAGCTGGTTCTCACAGATC 1215 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65629492135 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5