BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57770.1
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938754 jgi|Araly1|938754|scaffold_502945.1 558 3e-158
Ahg898727 jgi|Araly1|898727|Al_scaffold_0005_2693 433 2e-120
Ahg312655 jgi|Araly1|312655|fgenesh1_pm.C_scaffold_1001435 158 1e-37
Ahg939397 jgi|Araly1|939397|scaffold_503588.1 147 3e-34
Ahg950479 jgi|Araly1|950479|scaffold_802366.1 137 2e-31
Ahg896254 jgi|Araly1|896254|Al_scaffold_0005_220 130 3e-29
> Ahg938754 jgi|Araly1|938754|scaffold_502945.1
Length=1070
Score = 558 bits (302), Expect = 3e-158
Identities = 491/579 (85%), Gaps = 25/579 (4%)
Strand=Plus/Plus
Query 159 ACTCATTGCATCGTCAGGAGGTAAATACAATCCCATCCGTACGTTTTCTTCTC-ACCAAA 217
|||||||||| | |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 114 ACTCATTGCAACTTCAGGAGGTAAATACAATCCCATCCGTACGTTTTCTTC-CGACCAAA 172
Query 218 TCCTTGAAGCTACAAA-CAACTTCGACTGGAGCTATGCAATCGGTGTAGACAGATTCGTG 276
||||| |||| ||||| | |||| ||||||| ||| | |||| || |||||||||||||
Sbjct 173 TCCTTCAAGCCACAAATC-ACTTTGACTGGAACTACGTAATCTCTGAAGACAGATTCGTG 231
Query 277 TGGTACAAAGGTACGATTGAAAACAGAGC-CGTGCTGATCAAGTACTAT-AAAGGTGAAC 334
||||||||||||| ||||||||||||| | ||| ||||||||| | | | || | ||
Sbjct 232 TGGTACAAAGGTATGATTGAAAACAGA-CTCGTACTGATCAAGAAAT-TCCAA---G-AC 285
Query 335 CCTT-TAACTTT-GACCCTGACAACTTTTACCGTGATATTGCGGTTTCATCGATGATGAG 392
|| | ||| ||| ||||||||||||||||||| |||||||||||||| |||||||
Sbjct 286 TGTTCT-GTTTTCGACGCTGACAACTTTTACCGTGACATTGCGGTTTCATCTTTGATGAG 344
Query 393 CAGCCATAAGAATGTTCTCAAGC-TCTTGGGGTGTTGTCTAGAGTTTCCTCGTCCGGTTC 451
|||||||||||||||||||||| || | |||||||||||||||||||||||||| ||||
Sbjct 345 TAGCCATAAGAATGTTCTCAAGCTTC-TAGGGTGTTGTCTAGAGTTTCCTCGTCCTGTTC 403
Query 452 TCGTGTGTGAATACCCAGAAAAGGGAGCTCTTGCCTATATAGGAGGT-GCGGGGGAGGTA 510
|||||||||| ||||||||||| |||||||| || |||| || || | | |||
Sbjct 404 TCGTGTGTGAGTACCCAGAAAATGGAGCTCTAAACTGTATAAGACGTGGAAAAGAAGG-C 462
Query 511 ATCAAGCCATTGGCTTGGAGTGTAAGATTGAAG-ATCGCTAAGGAGATTGCAGATGCTGT 569
|| |||||| |||||| |||||| ||| || ||||| ||||||||||||||||||||
Sbjct 463 GTCCGGCCATTCCCTTGGAATGTAAGGTTG-AGAATCGCCAAGGAGATTGCAGATGCTGT 521
Query 570 AACGTATCTGCATACTGAATTCCCTAGGACTATAATCCATAGGGATTTAAAGCTTACAAA 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 522 AACGTATCTGCATACTGAATTCCCTAGGACTATAATCCATAGGGATTTAAAGCTTGCAAA 581
Query 630 TATTTTCTTGGACGAGAATTGGACCG-CTAAGCTCTCTTCTTTCAGCCTCAGCATACCAA 688
||||||| |||||||||||||| ||| | ||||||||||||||||||||||| ||| |
Sbjct 582 TATTTTCCTGGACGAGAATTGGTCCGTC-AAGCTCTCTTCTTTCAGCCTCAGTGTACTGA 640
Query 689 TTCCAGAGGGAGAGTTGGGGGTAGAA-GATATCGTTTGC 726
||||||| ||||| ||| ||| || || || ||||||
Sbjct 641 TTCCAGAAGGAGAAACGGGCGTA-AATGACATGGTTTGC 678
> Ahg898727 jgi|Araly1|898727|Al_scaffold_0005_2693
Length=552
Score = 433 bits (234), Expect = 2e-120
Identities = 267/283 (94%), Gaps = 2/283 (1%)
Strand=Plus/Plus
Query 759 GGAAAACATGGATTCTATCAAGAACCGGCTAATGGTGACAGTTATAACATGATTCTGTTG 818
||||| || ||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 271 GGAAAGCAGGGAATCTATCAAGAACCGGCTAATGGTGACAGTTATAACATGATTATGTTA 330
Query 819 CCTGATTATGTTGAGAAGTGTTTGGGGCGAGGACCGTTAGCTAAACTGATAGACCCATCG 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 CCTGATTATGTTGAGAAGTGTTTGGGGCGAGGACCGTTAGCTAAACTGATAGACCCATCG 390
Query 879 ATGTTAAACAGTACCGATGACGACATTCCTGATCATTCAAAACTGCAAATGGAAGCATTT 938
|||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 391 ATGTTAAACAGTGCGGATGACGACATTCCTCATCATTCAAAACTGCAAATGGAAGCATTT 450
Query 939 GTTAATCTTGC-ATTGAGATGTGTTGGATTCAGATCAGGAGAAACCAAGCTTCATATGAT 997
||| ||||||| || |||||||||| |||||||| ||| |||||||||||||||||||||
Sbjct 451 GTTGATCTTGCTAT-GAGATGTGTTAGATTCAGACCAGAAGAAACCAAGCTTCATATGAT 509
Query 998 AGATGTTGCAAAAGAACTCAAGCGGATACAAAAACAGACCTGA 1040
|||||||||||||||||||||||||||| |||| |||||||||
Sbjct 510 AGATGTTGCAAAAGAACTCAAGCGGATAGAAAACCAGACCTGA 552
Score = 135 bits (73), Expect = 6e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
Query 61 AAGGCCGAGAAAG 73
|||||||||||||
Sbjct 61 AAGGCCGAGAAAG 73
> Ahg312655 jgi|Araly1|312655|fgenesh1_pm.C_scaffold_1001435
Length=255
Score = 158 bits (85), Expect = 1e-37
Identities = 85/85 (100%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
Query 61 AAGGCCGAGAAAGGTATGATTTGGA 85
|||||||||||||||||||||||||
Sbjct 61 AAGGCCGAGAAAGGTATGATTTGGA 85
> Ahg939397 jgi|Araly1|939397|scaffold_503588.1
Length=376
Score = 147 bits (79), Expect = 3e-34
Identities = 103/114 (90%), Gaps = 4/114 (4%)
Strand=Plus/Plus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 ATGACCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 83
Query 61 AAGGCCGAGAAAGGTATGATTTGGACGAT-GGGCG-GAGCTTCTTATTTATACT 112
|||||||||||||||||||| || | || |||| || || || |||||||||
Sbjct 84 AAGGCCGAGAAAGGTATGATATGCAA-ATTGGGCTCGACCT-CTGATTTATACT 135
> Ahg950479 jgi|Araly1|950479|scaffold_802366.1
Length=211
Score = 137 bits (74), Expect = 2e-31
Identities = 80/83 (96%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 ATGACCCACATACCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 83
Query 61 AAGGCCGAGAAAGGTATGATTTG 83
||||||||||||||||||| |||
Sbjct 84 AAGGCCGAGAAAGGTATGAATTG 106
> Ahg896254 jgi|Araly1|896254|Al_scaffold_0005_220
Length=420
Score = 130 bits (70), Expect = 3e-29
Identities = 72/73 (99%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCCACATATCAAATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
Query 61 AAGGCCGAGAAAG 73
|||||||||||||
Sbjct 61 AAGGCCGAGAAAG 73
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46395589989
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5