BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57990.1
Length=1485
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486249 jgi|Araly1|486249|fgenesh2_kg.5__2241__AT3G57990.1 1338 0.0
> Ahg486249 jgi|Araly1|486249|fgenesh2_kg.5__2241__AT3G57990.1
Length=1381
Score = 1338 bits (724), Expect = 0.0
Identities = 887/962 (92%), Gaps = 25/962 (3%)
Strand=Plus/Plus
Query 140 ATGAAGGCATCGATGAAGTTTCGTGAAGAGCAAAAGCCTCTTTTTAGGGCTAAAGTTCCT 199
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 74 ATGAAGGCATCGATGAAGTTTCGTGAAGAGCAAAAGCCTCTTTTTAGGGCTAAGGTTCCT 133
Query 200 TTAAGCATCTTAGGTTTACCCTTTCAATCTGGAATCGTCGCCGGAGAATCCAAGGAGCTC 259
|| || |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 134 TTGAGTATCTTAGGTTTACCTTTTCAATCTGGTATCGTCGCCGGAGAATCCAAGGAGCTC 193
Query 260 AGTCTCAATCTCTCCACTTTCTTCGAATCTGGCCCTTCTCTCAAAGTCGCTTACCGTCCA 319
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 194 AGTCTCAATCTCTCCACTTTCTTCGAATCTGGACCTTCTCTCAAGGTCGCTTACCGTCCA 253
Query 320 AACGATTCGTGGAATCCTTTCTCTCTAATCGTCAAAACCGGATCGGGATCGTTCGGTTCT 379
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 AACGATTCGTGGAACCCTTTCTCTCTAATCGTCAAAACCGGATCGGGATCGTTCGGTTCT 313
Query 380 CCGATTTCAAGCTCTATGCTCATGAGCGCTGAATTCAATCTCCTAGGTCAAGGAAACCCT 439
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 314 CCGATTTCAAGCTCTATGCTCATGAGCGCTGAATTCAATCTCCTAGGTAAAGGAAACCCT 373
Query 440 AGCTTTATGCTCCACTTCAAACCTCAATTCGGCGATTTCTCTATCAAAAAGTCTCATTCT 499
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 AGCTTTATGCTTCACTTCAAACCTCAATTCGGCGATTTCTCTATCAAAAAGTCTCATTCG 433
Query 500 TCGTCTGGATTTGAGAGGAATTTGATCAAATCGATGAATGGATCTGTTTCCGAAGATGAT 559
|||||| | | | ||| |||||||||||||||||||||||||||| |||||||||
Sbjct 434 TCGTCTCAA----ACA--AATCTGATCAAATCGATGAATGGATCTGTTTCGGAAGATGAT 487
Query 560 TCTTCGATTGAGGTGGTGGATACTCCAGCGGTCAATGGATGCGGCGGAGGATTTAGAAAA 619
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 488 TCTTCGATTGAGGTGGTGGATACTCCAGCGGTCAATGGATGCGGCGGAGGATTTCGAAAA 547
Query 620 GTCACGGTTCTGCCGTCAACTTCTGCTGGAGATATCGCTGGATTGTTATCTGGCGTTGAG 679
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 548 GTCACGGTTCTGCCGTCAACTTCTGCTGGAGATATCGCTGGATTGTTATCCGGCGTTGAG 607
Query 680 GTTGCGGCGAGGACGTCTCTGCCTGTGAGAGGACGCGCCGTTTTGAATTTCCGGTGGGGC 739
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GTTGCGGCGAGGACCTCTTTGCCTGTGAGAGGACGCGCCGTTTTGAATTTCCGGTGGGGC 667
Query 740 GTTAGGGTTCCTACGGAGATCAGACGCGATTTCGATCCAACGGCTGCTATTTCGTTGAGG 799
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 668 GTTAGGGTTCCTACGGAGATCAGACGCGATTTCGATCCAACGGCTGCGATTTCGCTGAGG 727
Query 800 AGATTCCCTTTTTTGGTGATGAATAAAATAGGAATCGAACACGTGGACGGCGCAGATGCT 859
|||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 728 AGATTCCCGTTTTTGGTGATGAATAAAATCGGAATCGAACACGTGGACGGCTCAGATGCT 787
Query 860 AAAGTGACCAAATCCACTG-GTGATCCGGGTAAAGTTTCGG---GTCCGGCTCA-GTTCA 914
|||||||||||| |||| | | ||||||||| | || | || || | | ||
Sbjct 788 AAAGTGACCAAACCCAC-GAGCGATCCGGGTCAGGTCACAACAAGT--GG-TGACGTGG- 842
Query 915 CAACAAGTGGTGACGTGGC-G-GA---GGT-GATAGAGGAGCTTCGAACGGAGAACAAGC 968
| | ||| || |||| | || || ||| |||||||||||||||||||||||||
Sbjct 843 CGG-AGGTG-TGTT-TGGCCGTGAATCGGCAGATGGAGGAGCTTCGAACGGAGAACAAGC 899
Query 969 AGTTAAAGAGAGCCGTTGAAGATCTCCGGGAAGTAATATCAAACGTCCGTCCATACTCGC 1028
|||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 900 AGTTAAAGAGAGCCGTCGAAGATCTCCGGGAAGTTATATCAACCGTCCGTCCATACTCGC 959
Query 1029 CGGCGACAATTGATTACGGATCACACTCGAAGTATCGCGAATCCGAGAGGaacaacaaca 1088
|||||||||||||||||||||||||||| ||||| |||||| ||||||||| ||||||||
Sbjct 960 CGGCGACAATTGATTACGGATCACACTCAAAGTACCGCGAACCCGAGAGGAGCAACAACA 1019
Query 1089 ac 1090
||
Sbjct 1020 AC 1021
Score = 523 bits (283), Expect = 1e-147
Identities = 349/379 (92%), Gaps = 11/379 (3%)
Strand=Plus/Plus
Query 1108 caacaacaacGGGAGATCGAGAGCTGATCGGTGGAGCAGCGAGAGAACGACAACGTCTGA 1167
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1012 CAACAACAACGGGAGATCGAGAGCTGATCGGTGGAGCAGCGAGAGAACGACGACGTCTGA 1071
Query 1168 TTACGGTGGGAAGAAAAGCAAGGAAGAGGGCAATGTAGCTGAGGAGCTGAAGAAAGCTTT 1227
|||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1072 TTACGGCGGGAAGAAAAGCAAGGAAGAGGGCGATGTGGCTGAGGAGCTGAAGAAAGCTTT 1131
Query 1228 GAAAGGAGCTGCTTGAAGCTTCTATGGCGGCTATT-GGTAATCGCAGGCTTTACTCGAAT 1286
||||||||| ||||||||||||||||||||||||| ||||||| ||||||||| ||||||
Sbjct 1132 GAAAGGAGCCGCTTGAAGCTTCTATGGCGGCTATTTGGTAATCACAGGCTTTATTCGAAT 1191
Query 1287 TACAATTACATTTGTCGACCTTAATCAGCTATTGCTTTTGTATATATATGCGTTGAAT-T 1345
| ||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
Sbjct 1192 TCCAACTACATTTGTCGAC-TTAATCAGCTATGGCTTTTGTATATATATGCGTTGAATCT 1250
Query 1346 ATCTGGATTAGATTTGCACAACTTGTTTTGAATCTTTTGATGGAATCTTCAGAGTTTTGT 1405
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1251 -TCTGGATTAGATTTGCAGAACTTGTTTTGAATCTTTTGATGGAATCTTCAGAGTTTTAT 1309
Query 1406 ATGAGATTATGCTTTTCAATTCTCTTTATTGAACTTATATGCAGGTTGATTGTTGAATTG 1465
|||||||||||||||| || ||||||||| ||||| ||| ||| ||||| ||||| ||
Sbjct 1310 ATGAGATTATGCTTTTGAACTCTCTTTATGGAACTGATAAGCATGTTGA--GTTGA-TT- 1365
Query 1466 ATTTGAATCAGTATTCTAT 1484
| ||||||||||| |||
Sbjct 1366 -T--GAATCAGTATTATAT 1381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55573667455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5