BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G58010.1 Length=1177 Score E Sequences producing significant alignments: (Bits) Value Ahg486251 jgi|Araly1|486251|fgenesh2_kg.5__2243__AT3G58010.1 1637 0.0 Ahg483302 jgi|Araly1|483302|fgenesh2_kg.4__2362__AT2G42130.4 601 4e-171 Ahg933062 jgi|Araly1|933062|scaffold_401050.1 351 5e-96 > Ahg486251 jgi|Araly1|486251|fgenesh2_kg.5__2243__AT3G58010.1 Length=1098 Score = 1637 bits (886), Expect = 0.0 Identities = 983/1030 (95%), Gaps = 6/1030 (1%) Strand=Plus/Plus Query 103 TTCAATGGCATTGATCCAACATGGTTCGGTTTCTGGGACCTCTGCGGTTCGATTGAGCTT 162 |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 2 TTCAATGGCATTGATCCAACGTGGTTCGGTATCTGGGACCTCTGCGGTTCGATTGAGCTT 61 Query 163 CTCATCCTCTGTATCACCACCGTCGTCTTCTCCTCCACTGTCAAGGGTTTCTCTCAATTT 222 ||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 62 CTCATCCTCCGTATCACCAACGTCGTCTTCTCCTCCACCGTCAAGGGTTTCTCTCAATTT 121 Query 223 TCAGTCGGAGAAGAAGAGTTGTTACCGGAGAATGATATGCAGAGCTATGGTTCAAGACTC 282 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 122 TCAGTCGGAGAAGAAGAGTTGTTGCCGGAGAATGATATGCAGAGCTATGGTTCAAGACAC 181 Query 283 GGTTCAAGGGATTCCTTCAGTTTACGCCAGAGAAATGGAGCGTCTCTCTGCTAAGGAATC 342 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 182 GGTTCAAGGGATTCCTTCGGTTTACGCCAGAGAAATGGAGCGTCTCTCTGCTAAGGAATC 241 Query 343 GCTTATTCTCGCCTTCAATGATGCTGGAGGATTTGAGGCTCTAGTTACAGGGAAGATCAC 402 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 242 GCTTATTCTCGCCTTCAATGATGCTGGGGGATTTGAGGCTCTAGTTACTGGGAAGATCAC 301 Query 403 TGATATGCAAAAGATTGATGTCAATGAAAGGATAACGAATCTTGAGCGGCTTAATCCAAC 462 ||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||| Sbjct 302 TGATATGCAAAAGATTGATGTGAATGAGAGGATAACCACTCTTGAGCGGCTTAATCCAAC 361 Query 463 TCCTAGACCAACCACGTCTCCTTATCTTGAAGGTAGATGGAGTTTTGAGTGGTTTGGAGT 522 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 362 TCCTAGACCAACCACGTCTCCTTATCTTGAAGGTAGATGGAGTTTTGAGTGGTTTGGA-T 420 Query 523 C-AACACTCCTGGTTCTCTTGCTGTTCGGGTTATGTTCGAGAGGTTCCCTTCGACATTGG 581 | || || |||||||| ||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 421 CTAATACGCCTGGTTCACTTGCTGTTCGGGTTATATTCGAGAGGTTTCCTTCGACATTGG 480 Query 582 TGAGTCTATCCAATATGGAAATA-TTCATTAAAGATAATAACACAAAGGCAACAGCAAAC 640 |||||||||||| |||||| ||| || ||||| ||||||||||||| ||||||||||||| Sbjct 481 TGAGTCTATCCAGTATGGAGATAGTT-ATTAAGGATAATAACACAATGGCAACAGCAAAC 539 Query 641 ATCAAACTCCTAAACTCGATAGAAAACAAAATCACCCTGTCATCGAAATTGACAATAGAA 700 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 540 ATCAAACTCCTAAACTCGATAGAAAACAAAATCATCCTGTCATCGAAATTGACAATAGAA 599 Query 701 GGGCCTTTAAGGATGAAAGAAGAGTATTTAGAGGGATTGCTCGAGTCGCCAACGGTTATT 760 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 600 GGGCCTTTAAGGATGAAAGAAGAGTATTTAGAGGGAATGCTCGAGTCGCCAACGGTTATT 659 Query 761 GAAGAAGCAGTACCTGACCAACTAAGAGGTTTATTGGGTCAAGCTACTACCACGTTGCAA 820 |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 660 GAAGAAGCAGTACCTGACCAGCTAAGAGGTTTATTGGGTCAAGCTTCTACCACGTTGCAG 719 Query 821 CAGCTTCCTGAACCTATCAAAGATACTCTAGCCAATGGTCTAAGAATCCCCCTTGGTGGA 880 |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 720 CAGCTTCCTGCACCTATCAAGGATACTCTAGCCAATGGTCTAAGAATTCCCCTTGGTGGA 779 Query 881 ACTTACCAAAGATTCTTCATGATATCTTATCTAGACGACGAGATTCTTATTGTAAGAGAT 940 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 ACTTACCAAAGATTCTTCATGATATCTTATCTAGACGACGAGATTCTTATTGTAAGAGAT 839 Query 941 ACCGCAGGAGTGCCTGAAGTTCTAACGAGGGTGGAAACATCGTCTCCGATGTCTTCATCG 1000 |||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| Sbjct 840 ACCGCAGGAGTGCCTGAAGTTCTAACAAGGGTTGAAACATCGTCTTCGATGTCTTCATCG 899 Query 1001 AGTGTTGTAGAGAATCTTGAATACAACAGTTAAAAACAGGTTCTCTTGTTACTCTGATTC 1060 || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 900 AGCGTTGTAGAGAATCTTGAATACAACAGTTAAAAACAGTTTCTCTTGTTACTCTGATTC 959 Query 1061 TCTCTGTAAATGTAAGAACAAAAAGTGTATACAACTTACCGACCTCA-CTATAGTATATC 1119 |||||||||||||||||||||||||||||| ||||||||| |||||| | | |||||||| Sbjct 960 TCTCTGTAAATGTAAGAACAAAAAGTGTATCCAACTTACCAACCTCAAC-ACAGTATATC 1018 Query 1120 TCCGGACACA 1129 |||| |||| Sbjct 1019 ACCGGCCACA 1028 > Ahg483302 jgi|Araly1|483302|fgenesh2_kg.4__2362__AT2G42130.4 Length=1090 Score = 601 bits (325), Expect = 4e-171 Identities = 612/748 (82%), Gaps = 30/748 (4%) Strand=Plus/Plus Query 247 CCGGAGAATGA-TATGCAGAGCTATGGTTCAAGACTCGGTTCAAGGGAT-TCCTTCAGTT 304 |||||||| || | | ||||| ||||| || || | ||| | |||| |||||| ||| Sbjct 172 CCGGAGAA-GAGTTTTAAGAGCAATGGTGCAGGAAACAGTTTTA-GGATCTCCTTCGGTT 229 Query 305 TACGCCAGAGAAATGGAGCGTCTCTCTGCTAAGGAATCGCTTA-TTCTCGCCTTCAATGA 363 |||||||||||||||||||| || |||||||||||||||| || ||||||| || || || Sbjct 230 TACGCCAGAGAAATGGAGCGCCTTTCTGCTAAGGAATCGC-TAGTTCTCGCTTTGAAGGA 288 Query 364 TGCTGGAGGATTTGAGGCTCTAGTTACAGGGAAGATC-ACTGATATGCAAAAGATTGATG 422 ||||||||| ||||||||| ||||||||||||| | | ||| ||||||||| ||| |||| Sbjct 289 TGCTGGAGGCTTTGAGGCTTTAGTTACAGGGAA-AACAACTAATATGCAAAGGATCGATG 347 Query 423 TCAATGAAAGGATAACGAATCTTGAGCGGCTTAATCCAACTCCTAGACCAACCACGTCTC 482 | ||||| || || || | ||| ||||||||||| || |||||||||||||||||||||| Sbjct 348 TGAATGAGAGAATTACTAGTCTAGAGCGGCTTAACCCGACTCCTAGACCAACCACGTCTC 407 Query 483 CTTATCTT-GAAGGTAGATGGAGTTTTGAGTGGTTTGGAGTC--AACACTCCTGGTTCT- 538 ||| | || ||||| ||||||| |||||||||||||||| || | | |||||||| | Sbjct 408 CTTGT-TTCGAAGGCAGATGGAATTTTGAGTGGTTTGGA-TCTGGA-AGTCCTGGTT-TA 463 Query 539 CTTGCTGTTCGGGTTATGTTCGAGAGGTTCCCTTCGACATTGGTGAGTCTATCCAA-TAT 597 || |||| ||| ||||| |||||||| || ||||| ||||||| || | ||| ||| || Sbjct 464 CTCGCTGCTCGAGTTATATTCGAGAGATTTCCTTCAACATTGGCGAATTTAT-CAAGAAT 522 Query 598 GGAAATATTCATTAAAGATAATAACACAAAGGCAACAGCAAACATCAAACTCCTAAACTC 657 ||| ||| | || || ||| |||| ||||||| || ||||| |||||||| | ||||| Sbjct 523 GGAGATACTGATCAAGGATGCTAACGCAAAGGCGACGGCAAATATCAAACTTTTGAACTC 582 Query 658 GATAGAAAACAAAATCACCCTGTCATCGAAATTGACAATAGAAGGG-CCTTTAAGGA-TG 715 |||||||| |||||||| |||||||| |||||||| | | |||| ||||| | || || Sbjct 583 GATAGAAAGCAAAATCATTCTGTCATCAAAATTGACTGTCG-AGGGACCTTTGA-GATTG 640 Query 716 AAAGAAGAGTAT-TTAG-AGGGATTGCTCGAGTCGCCAACGGTTATTGAAGAAGCAGTAC 773 |||||||| ||| || | ||| | ||||||| || ||||| || |||||||||||||| | Sbjct 641 AAAGAAGAATATGTT-GAAGGTA-TGCTCGAATCCCCAACAGTCATTGAAGAAGCAGTTC 698 Query 774 CTGACCAAC-TAAGAGGTTTATTGGGTCAAGCTACTACCACGTTGCAACAGCTTCCTGAA 832 |||| || | ||| |||| |||||||||||| | || |||||||| |||||||||| Sbjct 699 CTGAACAGCTTAA-AGGTGCATTGGGTCAAGCCGCCACAACGTTGCAGCAGCTTCCTGCT 757 Query 833 CCTATCAAAGATACTCTAGCCAATGGTCTAAGAATCCCCCTTGGTGG-AACTTACCAAAG 891 | |||||| ||||||||||||| |||||| ||||| ||||| |||| ||| |||| Sbjct 758 CTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTAAGTGGTTCCTT-TGAAAG 816 Query 892 ATTCTTCATGATATCTTATCTAGACGACGAGATTCTTATTGTAAGAGATACCGCAGGAGT 951 ||||||||||||||||||||||||||| ||||||||||| || |||||||| | |||||| Sbjct 817 ATTCTTCATGATATCTTATCTAGACGAAGAGATTCTTATAGTTAGAGATACTGAAGGAGT 876 Query 952 GCCTGAAGTTCTAACGAGGGTGGAAACA 979 ||||||||||||||||||| | |||||| Sbjct 877 GCCTGAAGTTCTAACGAGGATTGAAACA 904 > Ahg933062 jgi|Araly1|933062|scaffold_401050.1 Length=271 Score = 351 bits (190), Expect = 5e-96 Identities = 237/259 (92%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 99 CTTATTCAATGGCATTGATCCAACATGGTTCGGTTTCTGGGACCTCTGCGGTTCGATTGA 158 ||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 13 CTTCTTCAATGGCATTGATCCAACATGCTTTGGTTTCTGGGACCTCTGCGGTTCGATTGA 72 Query 159 GCTTCTCATCCTCTGTATCACCACCGTCGTCTTCTCCTCCACTGTCAAGGGTTTCTCTC- 217 |||| |||||||| ||||||||| |||||||||||||||| | ||||||||| |||||| Sbjct 73 GCTTATCATCCTCCGTATCACCAACGTCGTCTTCTCCTCCGCCGTCAAGGGTCTCTCTCC 132 Query 218 AATTTTCAGTCGGAGAAGAAGAGTTGTTACCGGAGAATGATATGCAGA-GCTATGGTTCA 276 ||||| |||||||||||||||||||||| ||||||||||||||||||| | ||||||||| Sbjct 133 AATTT-CAGTCGGAGAAGAAGAGTTGTTGCCGGAGAATGATATGCAGAAG-TATGGTTCA 190 Query 277 AGACTCGGTTCAAGGGATTCCTTCAGTTTACGCCAGAGAAA-TGGAGCGTCTCTCTGCTA 335 |||| | ||||||| |||||||| |||||||||||||||| | |||||||||||||||| Sbjct 191 AGACGCCGTTCAAGTAATTCCTTCGGTTTACGCCAGAGAAAATAGAGCGTCTCTCTGCTA 250 Query 336 AGGAATCGCTTATTCTCGC 354 ||||||| ||||||||||| Sbjct 251 AGGAATCACTTATTCTCGC 269 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43917600384 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5