BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58050.1
Length=3769
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486257 jgi|Araly1|486257|fgenesh2_kg.5__2249__AT3G58050.1 5818 0.0
Ahg321881 jgi|Araly1|321881|fgenesh1_pm.C_scaffold_4001938 1218 0.0
> Ahg486257 jgi|Araly1|486257|fgenesh2_kg.5__2249__AT3G58050.1
Length=3762
Score = 5818 bits (3150), Expect = 0.0
Identities = 3575/3779 (95%), Gaps = 34/3779 (1%)
Strand=Plus/Plus
Query 1 ATGCCGGGTTTAGCGCAGAGGAATAATGACCAATACTCTTTTGGCTTCTGGTCAAAGGAA 60
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCTGGTTTAGCGCAGAGG---AATGACCAATACTCTTTTGGCTTCTGGTCAAAGGAA 57
Query 61 ATCGATGGTGTCAGCTATAATCAGCTCCAAAAGTTCTGGAGTGAGCTGTCACCGAAAGCT 120
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 58 ATCGATGGAGTCAGCTACAATCAGCTCCAAAAGTTCTGGAGTGAGCTGTCGCCGAAAGCT 117
Query 121 AGGCAGGAACTCCTTAAGATTGACAAACAGACTTTGTTTGAGCAAGCTCGTAAGAACATG 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AGGCAGGAACTCCTCAAGATTGACAAACAGACTTTGTTTGAGCAAGCTCGTAAGAACATG 177
Query 181 TATTGTTCCAGATGCAATGGTCTGCTTCTCGAAGGTTTCTTGCAGATTGTTATGCATGGG 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 178 TATTGTTCCAGATGCAATGGCCTGCTTCTCGAAGGTTTCTTGCAGATTGTTATGCATGGG 237
Query 241 AAGTCCTTGCATCCGGAGGGATCATTAGGGAATTCTCCTTGCAACAAATCAGGGGGATCC 300
|||||||||||||||||||||||| |||||| ||||||||||||||||||||| || ||
Sbjct 238 AAGTCCTTGCATCCGGAGGGATCAATAGGGAGTTCTCCTTGCAACAAATCAGGAGGCTCG 297
Query 301 AAATATCAATATGACTGTAACGCAGTTGTTAGTAACGGATGTGCGGATGAGATGCAAGAT 360
||||||||| ||||||||||| | ||||| |||||||||||| |||||||||||||||||
Sbjct 298 AAATATCAAAATGACTGTAACTCCGTTGTCAGTAACGGATGTTCGGATGAGATGCAAGAT 357
Query 361 CCGTCTGTTCATCCGTGGGGAGGTCTCACCACAACACGTGATGGGTCGCTTACGCTTCTT 420
|||||||||||||| |||||||||||| |||| |||||||||||||| || |||||||||
Sbjct 358 CCGTCTGTTCATCCATGGGGAGGTCTCGCCACGACACGTGATGGGTCACTCACGCTTCTT 417
Query 421 GATTGCTATTTGTATGCAAAGTCTCTCAAAGGACTTCAAAATGTGTTTGACAGTGCCCCT 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 418 GATTGCTATTTGTACGCAAAGTCTCTCAAAGGACTTCAAAATGTGTTTGACAGCGCCCCT 477
Query 481 GCTCGAGAAAGGGAACGTGAGTTGCTATATCCTGATGCTTGTGGTGGTGGAGGCCGGGGA 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 478 GCTCGAGAAAGGGAACGTGAGTTGCTTTATCCTGATGCTTGTGGTGGTGGAGGTCGAGGA 537
Query 541 TGGATAAGTCAAGGAATCGCTAGCTTTGGTAGAGGGCATGGAACAAGAGAAACGTGTGCT 600
||||||||||||||||| ||||||| ||||||||| |||||||| |||||||||||||||
Sbjct 538 TGGATAAGTCAAGGAATGGCTAGCTATGGTAGAGGTCATGGAACTAGAGAAACGTGTGCT 597
Query 601 CTACATACTGCAAGGCTTTCTTGTGATACACTGGTGGATTTCTGGTCCGCACTCAGTGAG 660
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||
Sbjct 598 CTACATACTGCAAGGCTTTCTTGTGATACATTGGTAGATTTCTGGTCCGCACTCAGCGAG 657
Query 661 GATACTCGACAATCTCTTTTGAGGATGAAAGAAGAGGATTTTATGGAGAGACTGAGGTAC 720
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 658 GAAACTCGACAATCTCTTTTGAGGATGAAAGAAGAGGATTTTATGGAAAGACTGAGGTAC 717
Query 721 AGG-A-TATGTT--ACCA--CTCAAGTTATCACATTTTGAATTGCAAGATGAATAGGCAT 774
||| | | | || | || || | ||||||||| |||||||| |||||||| |||||
Sbjct 718 AGGAAGT-TTTTGGA-CATGATCTGGATATCACATTCTGAATTGCTAGATGAATGGGCAT 775
Query 775 TTCGTTGTCTGGACTATTCAAGATGTTCTTACCAAATTCGACAGCAAGAGATTTTGTAGA 834
||| ||||||||||| || | ||||| | |||||||||||||||||||||||||||||||
Sbjct 776 TTCTTTGTCTGGACT-TTGAGGATGTGCCTACCAAATTCGACAGCAAGAGATTTTGTAGA 834
Query 835 GACTGCAGACGAAACGTTATTCGTGAGTTCAAAGAGCTTAAGGAACTGAAACGAATGCGG 894
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GACTGCAGACGAAATGTTATTCGTGAGTTCAAAGAGCTTAAGGAACTGAAACGAATGCGG 894
Query 895 AGAGAACCTCGGTGTACCACATGGTTTTGTGTTGCCAATACAACATTCCAATATGAGGTA 954
||||||||||| |||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct 895 AGAGAACCTCGATGTACCACATGGTTTTGTGTTGCCGATACAGCCTTCCAATATGAGGTA 954
Query 955 TCCATTGATTCGGTGAAAGCAGACTGGCGGGAAACTTTTTCTGAGAATGCTGGAAAGTAC 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 955 TCCATTGATTCGGTGAAAGCAGACTGGCGGGAAACTTTTTCTGAGAATGCTGGAATGTAC 1014
Query 1015 CATCACTTTGAGTGGGCAATTGGATCCGGAGAAGGAAAATGTGATATCCTCAAGTTTGAA 1074
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1015 CATCATTTTGAGTGGGCAATTGGAACCGGAGAAGGAAAATGTGATATCCTCAAGTTTGAA 1074
Query 1075 AATGTTGGCATGAATGGGAGAGTTCAAGTCAATGGCCTAAACCTTCGTGGTTTAAATTCA 1134
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1075 AATGTTGGCATGAATGGGAGAGTTCAAGTCAATGGCCTAGACCTTCGTGGTTTAAATTCA 1134
Query 1135 TGCTACATTACCCTTAGAGCTTATAAATTAGATGGCCGCTGGTCTGAAGTATCCGCCAAA 1194
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1135 TGTTACATTACCCTTAGAGCTTATAAATTAGATGGCCGCTGGTCTGAGGTATCCGTCAAA 1194
Query 1195 GCCCATGCATTAAAAGGTCAAAACTGTGTTCACGGCAGGCTAGTAGTTGGGGATGGCTTT 1254
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1195 GCCCATGCATTAAAAGGTCAAAACTGTGTGCACGGCAGACTAGTAGTTGGGGATGGCTTT 1254
Query 1255 GTTTCAATCAAGAGAGGTGAAAGCATCCGAAGGTTTTTTGAGCATGCTGAAGAGGCTGAG 1314
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1255 GTTTCAATAAAGAGAGGTGAAAGCATCCGAAGATTTTTTGAGCATGCTGAAGAGGCTGAG 1314
Query 1315 GAAGAAGAGGATGAAGACATGATGGACAAAGATGGGAATGAGCTCGATGGGGAATGCTCT 1374
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1315 GAAGAAGAGGATGAAGACATGATGGACAAAGATGGGAATGAGCTTGATGGGGAATGCTCC 1374
Query 1375 CGTCCACAAAAGCATGCAAAAAGTCCAGAACTTGCTCGAGAGTTTCTAT-TAGATGCTGC 1433
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1375 CGTCCACAAAAGCATGCAAAAAGTCCAGAACTTGCTCGAGAGTTTCT-TCTAGATGCTGC 1433
Query 1434 AACAGTTATTTTTAAAGAACAGGTTGAAAAAGCATTCAGGGAGGGAACCGCTCGGCAAAA 1493
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1434 GACAGTTATTTTTAAAGAACAGGTTGAAAAAGCATTCAGGGAAGGAACCGCTCGGCAAAA 1493
Query 1494 TGCACATAGTATCTTTGTATGTCTTACATTGAAACTATTAGAACAACATTTACATGTTGC 1553
|||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1494 TGCACACAGTATCTTTGTATGTCTTACATTGAAACTATTAGAACAACGTGTACATGTTGC 1553
Query 1554 CTGCAAGGAAATTATTACCTTGGAGAAACAGGTGAAACTTCTTgaggaagaagagaaaga 1613
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1554 CTGCAAGGAAATTATCACCTTGGAGAAACAGGTGAAACTTCTTGAGGAAGAAGAGAAGGA 1613
Query 1614 aaagcgtgaagaagaggagcggaaggagaagaaaagatccaaagagagggagaaaaaact 1673
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1614 AAAGCGTGAAGAAGAGGAGCGGAAAGAGAAGAAAAGATCCAAAGAAAGGGAGAAAAAACT 1673
Query 1674 tcgcaaaaaggagagattgaaggaaaaagacaaaggcaaggagaagaaaaaCCCTGAATG 1733
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1674 TCGCAGAAAGGAGAGATTGAAGGAAAAAGAAAAAGGCAAGGAGAAGAAAAACCCTGAATC 1733
Query 1734 TAGCGATAAAGACATGCTGCTGAATTCATCAAGGGAAGAAGAAGATCTTCCAAACCTTTA 1793
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
Sbjct 1734 TAGCGATAAAGACATGCTGCTGAATTCACCAAGGGAAGAAGAAGATCTTCCCAACCTTGA 1793
Query 1794 TGATGAGACGAACAATACCATAAACAGCGAGGAGTCAGAAATTGAAACGGGGTATGCAGA 1853
|||| |||| || |||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1794 TGATAAGACAAATAATACCATAAACTGCGAGGAGTCAGAAATTGAAACGGGGGATGCAGA 1853
Query 1854 TTTGTCTCCACCTGGTTCTCCTGATGTTCAAGAAAGACAGTGTTTGGATGGTTGCCCTTC 1913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 TTTGTCTCCACCTGGTTCTCCTGATGTTCAAGAAAGACAGTGTTTGGATGGTTGCCCTTC 1913
Query 1914 TCCAAGAGCGGAAAACCACTACTGTGACAGACCTGACAGAG-ATATTAAAGATCTTGAAG 1972
|||||||||||||||||||||||||||||| |||||||||| || ||| |||||||||||
Sbjct 1914 TCCAAGAGCGGAAAACCACTACTGTGACAGCCCTGACAGAGAAT-TTACAGATCTTGAAG 1972
Query 1973 ATGAGAATGTGTACTTTACAAATGATCATCAAAAACCTGTTCACCAGAACGCAAGATATT 2032
|||||| | ||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1973 GTGAGAACGGGTACTTTACAAATGATCATCAAAAAACTGTTCACCAGAATGCAAGATATT 2032
Query 2033 GGAAAGAAGTGCAGTCTGATAATGCTTTGAGGTGGTCAGATAAACGCAGATATTCAGATA 2092
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2033 GGAAAGAAGTGCAGTCTGATAATGCTTTGAGGTGGTCAGATAAACGCAGATATTCGGATA 2092
Query 2093 ATGCTTCTTTTGTCAGTAGGTCAGAGGCAAGATACCGTAATGATAGATTAGAAGTGCCTT 2152
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2093 ATGCTTCGTTTGTCGGTAGGTCAGAGGCAAGATACCGTAATGATAGATTAGAAGTGCCTT 2152
Query 2153 CAAGGGGATTCAATGGGTCAAACAGACAGTTAAGAGTGAATGCTTCAAAGACTGGTGGCC 2212
|||||||||| ||||||||||||| |||||||||||| || ||||||||||||||||||
Sbjct 2153 CAAGGGGATTTAATGGGTCAAACAAACAGTTAAGAGTTAAACCTTCAAAGACTGGTGGCC 2212
Query 2213 TGAATGGTATCAAGTCTCATGAGAAGTTTCAATGTTGCGACAACAGAATCAGTGAGAGGT 2272
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2213 TGAATGGCATCAAGTCTCATGAGAAGTTTCAATGTTGCGACAACAGGATCAGTGAGAGGT 2272
Query 2273 TTGACTTCAGTTCTTGCAGTTGCAAACCAAGTTGTGAATATCGGGCAAAAGTAGAACCTA 2332
||||||| | |||||||||||||||||| ||| ||||||| ||||||||| |||||||||
Sbjct 2273 TTGACTTAAATTCTTGCAGTTGCAAACCGAGTAGTGAATACCGGGCAAAATTAGAACCTA 2332
Query 2333 AAACCGCTGGAT-CCAGAAGCACGCGAGAACCAAAAACCA-TATCCAATTCGGACTCTGC 2390
| | | || | | ||||||||| |||||||||||||| || |||||||||| ||||||||
Sbjct 2333 ACATCTCT-GCTACCAGAAGCATGCGAGAACCAAAAA-CAGTATCCAATTCTGACTCTGC 2390
Query 2391 TCTTGATGCCTCCAAGCCAGTGTTCCAAGGCAACAGGTATACTCAACCAGACTATACTCG 2450
|| ||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||
Sbjct 2391 TCCTGATGCCTCCAAGCCAGTGTTCCGAGGCAACAGGTATACTCAATCAGACCATACTCG 2450
Query 2451 TGAGTTAAGACTTAAAAGCAAGGTTGGAGTTGGTCCAAATCCTTCTACTACTAGAGATTC 2510
||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 2451 TGAGTTAAGACTTAAGAGCAAGGTGGGAGTTGGTCCAAATCCTTCTAATACTAGAGATTC 2510
Query 2511 ACTACATTCAAAACAAGTTTGGGAGCCCATGGAGCCAAAGAAGTACCCACGAAGCAACTC 2570
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 2511 ACTACATTCAAAACAAGTTTGGGAGCCCATAGAGCCAAAGAAGTATCCACGAAGCAACTC 2570
Query 2571 GT-ACTCTGAAGTAACAGTTAGATGTTCAACATTTAAGGCTGAAGAGATAGAAGACGCTA 2629
| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 2571 -TGACTCTGAAGTAACAGTTAGATGTTCAACATTTAAAGCTGAAGAGATAGAAGACACTA 2629
Query 2630 TCGTTGCTGAGAATTCATCTGACCTTTTGTCTCAATGTAAGGTTACAGAGAAGTTGGATA 2689
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 2630 TCGTTGCTGAGAATTCATCTGACCTTTTGTCTCAATGTAAGGCTACAGAGAAATTGGATA 2689
Query 2690 ATATCAAGCTTAAAGATGAA-AACAGCATGGAGTCCGGGGAAACAAAGAATGGGTGGCAT 2748
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 2690 ATATCAAGCTTAAAGAT-AACAACAGCATGGAGTCCGGGGAAACAAAGAATGGGTGGCAT 2748
Query 2749 TTGAAAGATCCTATGATGAGTAGTACATCGAGTTCAGACAATTGCTCGTCATGCCTGAGC 2808
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2749 TTGAAAGATCCTATGATTAGTAGTACATCGAGTTCAGACAATTGCTCGTCATGCCTGAGC 2808
Query 2809 GAGGGAGAGAGCAATACGGTTTCGTCAAACAACGGAAACACTGAATCCTCCTCCACATCT 2868
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2809 GAGGGAGAGAGCAATACGGTTTCTTCAAACAACGGAAACACTGAATCCTCCTCCACATCT 2868
Query 2869 GATTCTGAAGACGCCAGTCAGCAATCTGAAGGAAGAGAGAGTATAGTTGTTGGTACACAG 2928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2869 GATTCTGAAGACGCCAGTCAGCAATCTGAAGGAAGAGAGAGTATAGTTGTTGGTACACAG 2928
Query 2929 AACGATATCCTCATACCAGATACTACTGGGAAGAGTAAAATTCCGGAAACTCCTATAGTA 2988
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2929 AACGATATCCTCATACCAGATACTACTGGGAAGAGTGAAATTCCGGAAACTCCTATAGTA 2988
Query 2989 GTAACTGGGAACAACA-TGGATAATAACAGTAACAATAATATGGTACATGGTCTTGTTGA 3047
|||||||||||||||| || ||||||||||||||||||| |||| ||||||| |||||||
Sbjct 2989 GTAACTGGGAACAACACTG-ATAATAACAGTAACAATAACATGGCACATGGTGTTGTTGA 3047
Query 3048 TGTGCAACCACAAGGAGGCATGTTCCCTCATTTGCTAACCCAGAATCTACAGTATCCCGT 3107
|| ||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||
Sbjct 3048 TGGGCAACCACAAGGAGGCATGTTCCCTCATTTGCTAAACCAGAATCTACAATTTCCCGT 3107
Query 3108 TTTCCAGACTGCTTCACCAATGGGCTACTTCCATCAAGCACCACCAGTCTCTTGGCCCAC 3167
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3108 TTTCCAGACTGCTTCACCAATGAGCTACTTCCATCAAGCACCACCAGTCTCTTGGCCCAT 3167
Query 3168 GGGTCCAGCCAATGGATTGATTCCATTCCCTCACCCTAATCCTTATCTATACACAGGTCC 3227
|| ||||||||||||||| ||||| ||| ||||||||||||| |||||||||||||||||
Sbjct 3168 GGCTCCAGCCAATGGATTAATTCCGTTCGCTCACCCTAATCCCTATCTATACACAGGTCC 3227
Query 3228 GCTCGGATATAGTATGAACGGAGATCCCCCGCTGTGCTTGCAGTACGGTAGCCCATTGAA 3287
||||||||||||||||||||||||| ||||||||||||||||||| |||| |||| | ||
Sbjct 3228 GCTCGGATATAGTATGAACGGAGATTCCCCGCTGTGCTTGCAGTATGGTAACCCACTAAA 3287
Query 3288 TCATGCGGCAACTCCCTTCTTCAA-CCCTGGGCCAGTTCCAGTGTTCCATCCATTTTCCA 3346
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||
Sbjct 3288 TCATGCGGCAACTCCCTTCTTCAATCCC-GGGCCAGTTCCAGTGTTCCATCCATATTCCA 3346
Query 3347 AAACCAACACCGAGGACCAAGCTCAGAATCTTGAGCCGCCACTGGAACTAAACTGTTTGG 3406
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 3347 AAACCAACACCGAGGACCAAGCTCAGAATCTTGAGCCGCCACAGGAACTAAACGGTTTGG 3406
Query 3407 CTCCACCGGAAACACAGACCGTAAATGAAGACAGCTTCTCCTTATTCCATTTCAGTGGAC 3466
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3407 CTCAACCGGAAACACAGACCGTAAGTGAAGACAGCTTCTCCTTATTCCATTTCAGTGGAC 3466
Query 3467 CTGTAGGTCTTTCCACTGGAAGTAAGTCGAAGCCTGCTCATTCCAAAGACGGGATTTTGC 3526
|||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 3467 CTGTGGGTCTTTCCACTGGAAGTAAGTCCAAGCCTGCTCATTCCAAAGACGGGGTTTTGC 3526
Query 3527 GCGACGTTGTTGGAAATATCTATACGAAAGCGAAAGAGAGCAAAGAGGTTGAAGAGTATA 3586
||||| ||||||||||| | |||| ||||||||||||||||||||||||||||||||||
Sbjct 3527 GCGACCCTGTTGGAAATAACGATACAAAAGCGAAAGAGAGCAAAGAGGTTGAAGAGTATA 3586
Query 3587 ACTTATTTGCAACTG-GCAATGGCCTGAGGTTTTCGTTATTCTAAAGTAACGGTTTTGGG 3645
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 3587 ACTTATTTGCAAC-GAGCAATGGCCTGAGGTTTTCGTTATTCTAAATTAACGGTTTTGGG 3645
Query 3646 TTTGTTGTTGATTTAAACTGTGGAGTGTGAG-GTGTTTTATGACTTTGTATCATCCGCAA 3704
|||| ||||||||||||||||||| |||||| | |||| |||||||||||||||||| ||
Sbjct 3646 TTTGCTGTTGATTTAAACTGTGGATTGTGAGAG-GTTTCATGACTTTGTATCATCCGGAA 3704
Query 3705 CGTTATTTATTCGTCTGGaaaacaaaacaaaaaa-TCTTTCAATTTTAAACCttttttt 3762
||||||| ||||||||||||||| |||||||||| ||||||||||||| ||||||||||
Sbjct 3705 CGTTATT-ATTCGTCTGGAAAACGAAACAAAAAAATCTTTCAATTTTATACCTTTTTTT 3762
> Ahg321881 jgi|Araly1|321881|fgenesh1_pm.C_scaffold_4001938
Length=3657
Score = 1218 bits (659), Expect = 0.0
Identities = 1301/1603 (81%), Gaps = 75/1603 (5%)
Strand=Plus/Plus
Query 802 CTTACCAAATTCGACAGCAAG-AGATTTTGTAGAGACTGCAGACGAAACGTTATTCGTGA 860
|||| || ||||||| ||||| || |||||||||||||||||| |||| |||||||| ||
Sbjct 731 CTTA-CAGATTCGACTGCAAGAAG-TTTTGTAGAGACTGCAGAAGAAATGTTATTCGGGA 788
Query 861 GTTCAAAGAGCTTAAGGAACTGAAACGAATGCGGAGAGAACCTCGGTGTACC-ACATGGT 919
||| ||||| ||||||||||| |||||||||| ||||||||| | |||||| || ||||
Sbjct 789 GTTTAAAGAACTTAAGGAACTTAAACGAATGCAGAGAGAACCAAGATGTACCGAC-TGGT 847
Query 920 TTTGTGTTGCCAATACAACATTCCAATATGAGGTATCCATTGATTCGGTGAAAGCAGACT 979
||||||||||| ||||| | || || |||||||| ||||||||| || |||| | |
Sbjct 848 TTTGTGTTGCCGATACAGCCTTTCAGTATGAGGTGGACATTGATTCCGTCCGAGCAAATT 907
Query 980 GGCGGGAAAC-TTTTTCTGAGAATGCTGGAAAGTACCATCACTTTGAGTGGGCAATTGGA 1038
|| | ||| |||| | ||||||||||| | || ||||| || |||||||| ||||||
Sbjct 908 GG-AGTCAACATTTTACAGAGAATGCTGG--A-TATCATCAATTCGAGTGGGCTATTGGA 963
Query 1039 TCCGGAGAAGGAAAATGTGATATCCTCAAGTTTGAAA-ATGTTGGC-ATGAATGGGAGAG 1096
| |||||||| ||| |||||||| | || || ||| | || ||| ||| || |||| |
Sbjct 964 ACTGGAGAAGGCGAATCTGATATCCGCGAG-TTCAAATACGTAGGCAATG-ATCGGAGTG 1021
Query 1097 TTCAAGTCAATGGCCTAAACCTTCGTGGTTTAAATTCATGCTACATTACCCTTAGAGCTT 1156
||||||||||||||| |||||||||| ||| | |||||||||||| ||||| ||||
Sbjct 1022 CCCAAGTCAATGGCCTAGACCTTCGTGGATTACACGAATGCTACATTACTCTTAGGGCTT 1081
Query 1157 ATAAATTAGATGGCCGCTGGTCTGAAGTATCCGCCAAAGCCCATGCATTAAAAGGTCAAA 1216
|||| | ||||||||| || ||| |||| | ||||||||||||||| | ||| |||
Sbjct 1082 TTAAAAAAAATGGCCGCTCCTCGGAAATATCTGTCAAAGCCCATGCATTGAGAGGCCAAC 1141
Query 1217 ACTGTGTTCACGGCAGGCTAGTAGTTGGGGATGGCTTTGTTTCAATCAAGAGAGGTGAAA 1276
| || |||||| |||||| || ||||||||||||||||||||||| || ||||| |||
Sbjct 1142 AGTGCGTTCACTCCAGGCTTGTGGTTGGGGATGGCTTTGTTTCAATTAAAAGAGGGGAAT 1201
Query 1277 GCATCCGAAGGTTTTTTGAGCATGCTGAAGAGGCTGAGGAAGAAGAGGATGAAGACATGA 1336
|||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1202 GCATTCGAATGTTTTTTGAGCATGCTGAAGAGGCTGAGGAAGAAGAGGATGAAGTCATGA 1261
Query 1337 TGGACAAAGATGGGAATGAGCTCGATGGGGAATGCTCT-CGTCCACAAAAGCATGCAAAA 1395
| ||||||||||| |||||||| ||||| || |||| | ||||||||||||||||| ||
Sbjct 1262 TAGACAAAGATGGAAATGAGCTTGATGGTGAGTGCT-TGCGTCCACAAAAGCATGCTAAG 1320
Query 1396 AGTCCAGAACTTGCTCGAGAGTTTCTAT-TAGATGCTGCAACAGTTATTTTTAAAGAACA 1454
|||||||||||||||||||||||||| | ||||||||||||| |||||||| || || ||
Sbjct 1321 AGTCCAGAACTTGCTCGAGAGTTTCT-TCTAGATGCTGCAACGGTTATTTTCAAGGAGCA 1379
Query 1455 GGTTGAAAAAGCATTCAGGGAGGGAACCGCTCGGCAAAATGCACATAGTATCTTTGTATG 1514
||||||||| ||||| ||||| || || || || ||||||||||| ||||| ||||| ||
Sbjct 1380 GGTTGAAAAGGCATTTAGGGATGGTACAGCCCGTCAAAATGCACACAGTATATTTGTCTG 1439
Query 1515 TCTTACATTGAAACTATTAGA-ACAACAT-TTACATGTTGCCTGCAAGGAAATTATTACC 1572
||| ||| |||||||||||| | ||| | || ||| ||||||||||||||||| | |||
Sbjct 1440 CCTTTCATCGAAACTATTAGAGA-AACGTGTT-CATATTGCCTGCAAGGAAATTGTCACC 1497
Query 1573 TTGGAGAAACAGGTGAAACTTCTTgaggaagaagagaaagaaaagcgtgaagaagaggag 1632
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TTGGAGAAGCAGAACAAACTTCTTGAGGAAGAAGAGAAAGAAAAGCGTGAAGAAGAGGAG 1557
Query 1633 cggaaggagaag-aaaagatccaaagagagggagaaaaaacttcgcaaaaaggagagatt 1691
|| || || ||| |||||| ||||| | ||||||||||||||| | ||||||||||||
Sbjct 1558 CGAAAAGA-AAGGAAAAGAAATAAAGAAAAGGAGAAAAAACTTCGTAGAAAGGAGAGATT 1616
Query 1692 gaaggaaaaaga-caaaggcaaggagaagaaaaaCCCTGAATGTAGCGATAAAGACA-TG 1749
|||||||||||| | | | || ||| |||| || || ||| ||| ||||||| || |
Sbjct 1617 GAAGGAAAAAGAACGA-GAAAAAGAGCAGAAGAATCCAAAATTTAGTGATAAAG-CAATA 1674
Query 1750 CTGCTGAAT-TCATCAAGGGAAGAAGAA-GATCTTCCAAACCTTTATGATGAGACGAACA 1807
|||| ||| | ||||||||||||||| | ||| ||||| ||| |||| || | ||||
Sbjct 1675 CTGCCAAATATG-TCAAGGGAAGAAGAATGCTCT-CCAAATCTTGATGAGGAAAATAACA 1732
Query 1808 ATACCATAA-ACAGCGAGGAGTCAGAAATTGAAACGGGGTATGCAGATTTGTCTCCACCT 1866
||||||||| | |||||||||| | |||||||| || ||| |||||||||| |||||
Sbjct 1733 ATACCATAAGAT-GCGAGGAGTCCGGAATTGAAAATGGAAATGTAGATTTGTCTTCACCT 1791
Query 1867 GGTTCTCCTGATGTTCAAGA--AAGACAGTGTTTGGATGGTTGCCCTTCTCCAAGAGCGG 1924
||||||||||||| |||||| |||| |||||||||||||||| ||||||||||||| |
Sbjct 1792 GGTTCTCCTGATGATCAAGATGAAGA--GTGTTTGGATGGTTGCGCTTCTCCAAGAGCTG 1849
Query 1925 AAAACCACTACT-GTGACAG-ACCTGACAGAGATATTAAAGATCTTGAAGATGAGAATGT 1982
||| ||||| || |||| || || ||| || || |||| ||||| ||||||||| || |
Sbjct 1850 AAACCCACT-CTTGTGATAGCAC-TGATAGGGAGATTATAGATCATGAAGATGAAAACG- 1906
Query 1983 G-TACTTTACAAATGATCATCAAAAACCTGTTCACCAGA-ACGCAAGAT-ATTGGAAAGA 2039
| | ||||||| |||| ||| || ||||| ||| |||| | ||||||| || |||||||
Sbjct 1907 GCTGCTTTACACATGAAAATCCAAGACCTGCTCATCAGACA-GCAAGATTAT-GGAAAGA 1964
Query 2040 AG-TGCAGTCTGATAATGCTTTGAGGTGGTCAGATAAACGCAGATATT-CAGATAATGCT 2097
| | ||| ||||| |||||||||| |||||||| |||||||||| || |||| ||||||
Sbjct 1965 GGCT-CAGACTGATCATGCTTTGAGATGGTCAGAAAAACGCAGAT-TTACAGAGAATGCT 2022
Query 2098 TCTTTTGTCAGTAG-GTCAGAGGCAAGATACCGTAATGATAGATTAGAAGTGCCTTCAAG 2156
|||| ||||||||| | | |||||| ||||| ||||||||||||||||| |||||||| |
Sbjct 2023 TCTTCTGTCAGTAGTG-CTGAGGCAGGATACTGTAATGATAGATTAGAAATGCCTTCACG 2081
Query 2157 GGGA-TTCAATGGGTCAAACAGACAGTTAAGAGTGAATGCTTC-AAAGACTGGTGG---C 2211
| |||||||||||| | | | | || |||||||| |||| ||| |||||||| |
Sbjct 2082 AC-ACTTCAATGGGTCAGATAAAAATTTGAGAGTGAAAGCTTTGAAA-ACTGGTGGTAGC 2139
Query 2212 CT-GAATGGTATCAAGTCTCATGAGAAGTTTCAATGTTGC-GACAACAGAATCAGTG-AG 2268
| || | | || | |||||||||| ||||||| |||| | ||| |||| | | | | ||
Sbjct 2140 CCAGA-TAGCATTAGGTCTCATGAGGAGTTTCAGTGTT-CAGACGACAGGA-CTGGGGAG 2196
Query 2269 AGGTTTGA-CTTCAGTTCTTGCAGTTGCAAACCAAGTTG-TGAATATCGGGCAAAA-GTA 2325
|||| ||| | || |||||||||||||||||| | || || || |||| |||| |||
Sbjct 2197 AGGTATGATCACCA-TTCTTGCAGTTGCAAACCCA-TTAATGGTTACCGGG-AAAATGTA 2253
Query 2326 GAACCTAAAACCG-CTGGATCCAGAAGCACGCGAGAACCAAAA 2367
|| |||| | ||| | ||||| ||| ||||||||| |||
Sbjct 2254 GAGTCTAAT-CTATCTGCAACCAGAGGCATGCGAGAACCCAAA 2295
Score = 106 bits (57), Expect = 1e-21
Identities = 77/87 (89%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 2829 TTCGTCAAACAACGGAAACACTGAATCCTCCTCCACATCTGATTCTGAAGACGCCAGTCA 2888
||| |||||||||||||||| |||||||||||| |||||||| ||||| ||||||||
Sbjct 2700 TTCTTCAAACAACGGAAACATTGAATCCTCCTCGTTGTCTGATTCCGAAGATGCCAGTCA 2759
Query 2889 GCAATCTGAAGGAAGAGAGAGTATAGT 2915
|||||||||||||||||||| | ||||
Sbjct 2760 GCAATCTGAAGGAAGAGAGAATCTAGT 2786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 142411438166
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5