BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58490.1
Length=1548
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486298 jgi|Araly1|486298|fgenesh2_kg.5__2290__AT3G58490.1 2045 0.0
> Ahg486298 jgi|Araly1|486298|fgenesh2_kg.5__2290__AT3G58490.1
Length=1465
Score = 2045 bits (1107), Expect = 0.0
Identities = 1389/1514 (92%), Gaps = 63/1514 (4%)
Strand=Plus/Plus
Query 25 tctctctctctctctttctctctGCCAGCGAACATCCATTGGAGCTCCTCACTATACGGC 84
||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 TCTCTGTCTTTCTCTTTCTCTCTGCCAGCAAACATCCATTGGAGCTCCTCACTATACGGC 60
Query 85 CCAAGAGATAGAGGGAGAGAGAAGACATCATAATTCCCAAACAAAAGACTTTGGGTATAA 144
||||| |||| ||||||| |||| | | | ||||||||| |
Sbjct 61 TGAAGAG--AGAGAGAGAGAG-AGAC--C---A-T-----ACAAAAGAC--------T-- 96
Query 145 AATTGGGTTTATTGACTTTGTGAAACCTACCCAGAAAATCTA-C--CAACTGTCTCGAAG 201
||||| |||||||||||||||||| |||||||||||| | |||||| ||| ||
Sbjct 97 --TTGGG----TTGACTTTGTGAAACCTAGCCAGAAAATCTACCAACAACTGCCTCAAAT 150
Query 202 TCTCTCTCCTCTTTCTTGAAA-CGGGAAAGAGGGAGGGAAGAACAATAAGAAGATGAAGA 260
||||||||||||||||||||| |||| || | || || | || | |||||
Sbjct 151 TCTCTCTCCTCTTTCTTGAAACCGGG-AA-A--GA-GG--G-------AG--G--GAAGA 192
Query 261 AGATTCTAGAAAGATCAATGGAAGGTTCAGGGACATGGCAAGGCTTGGTGCTCGTTGGTA 320
||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||
Sbjct 193 AGATTCTAGAAAGATCAATGGAAGGCTCAGGGACATGGCAAGGCTTGATCCTCGTTGGTA 252
Query 321 TTGTCACATGGATCTGTGCTTCTTCTTATCTTAAATTTACCCATAAATTTAGATCTCTCT 380
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 253 TTGTCACTTGGATCTGTGCTTCTTCTTATCTCAAATTTACCCATAAATTTAGATCTCTCT 312
Query 381 TACAACCATGGGTCGCTCGTCAAGTCGTTGGTGGTGTCCCTCTCATTCTCAGAATCCAGA 440
|||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 313 TACAACCATGGGTCGCTCGTCAAGTCGTCGGTGGTCTTCCTCTCATTCTCAGAATCCAGA 372
Query 441 AATGTCAGAATGGAGTGTTGGATGCTTTCTTCTCAGGGCTATCTTGTGTTGTCTCTGTTC 500
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 373 AATGTCAGAATGGAGTGTTGGATGCTTTCTTCTCAGGACTATCATGTGTTGTCTCTGTGC 432
Query 501 CCTTTTACACTGCTTTCTTGCCTTTGCTCTTCTGGAGTGGACATGGTAGATTGGCTAGGC 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 CCTTTTACACTGCTTTCTTGCCTTTGCTCTTCTGGAGTGGACATGGTAGATTGGCTAGGC 492
Query 561 AGATGACTCTCTTGATTGCATTCTGTGATTACTTGGGAAACTGCATTAAGGATGTGGTAT 620
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 493 AGATGACTCTCTTGATTGCATTCTGTGATTACTTGGGAAATTGCATTAAGGATGTGGTAT 552
Query 621 CAGCTCCTAGGCCAAGCTGTCCACCGGTTAGAAGGATTACTGCCACTAAAGATGAGGAAG 680
| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 553 CTGCTCCTAGGCCAAGCTGCCCACCGGTTAGAAGGATTACTGCCACAAAAGATGAGGAAG 612
Query 681 ACAATGCAATGGAATATGGCTTGCCTTCTTCACATACTCTTAACACTGTTTGTTTATCTG 740
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 613 ACAATGCAATGGAATATGGCTTGCCTTCTTCGCATACTCTTAACACTGTTTGTTTATCCG 672
Query 741 GCTATCTACTCCATTATGTGTTATCCTCCTTGGAATACGAAAGTGTGTCTATCCAGTACT 800
||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||
Sbjct 673 GCTATCTACTCCATTATGTGTTATCCTCCTTGGAACACGAAACTGTGTCTATCCAATACT 732
Query 801 ATGGATTTGCCCTTGCTTGTTTGTTGGTAGCTC-TAATCGCCTTCGGAAGGGTTTACTTG 859
||||||||||||||||||||||| |||||| || ||||||||||||||||| ||||||||
Sbjct 733 ATGGATTTGCCCTTGCTTGTTTGCTGGTAG-TCCTAATCGCCTTCGGAAGGATTTACTTG 791
Query 860 GGTATGCATAGTGTCGTCGATATCGTCAGTGGTCTTGCCATAGGAGTCCTGATTCTAGGT 919
|||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 792 GGTATGCACAGTGTCGTCGATATCATCAGTGGTCTTGCCATAGGAGTTCTGATTCTAGGT 851
Query 920 CTTTGGCTTACCGTCAATGAAAAACTTGACGATTTCATTACATCAAAACAGAACGTTAGC 979
|||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 852 CTTTGGCTTATCGTCAACGAAAAAATTGACGATTTCATTACATCAAAACAGAACGTTAGC 911
Query 980 TCTTTCTGGACCGCGTTGAGTTTCTTATTGCTCTTTGCTTATCCGACCCCTGAGCACCCA 1039
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 912 TCCTTCTGGACCGCGTTGAGTTTCTTATTGCTCTTTGCTTATCCAACCCCTGAGCACCCA 971
Query 1040 ACTCCTAGCTACGAGTACCACACAGCCTTCAACGGGGTTACCTTAGGAATTGTTACCGGA 1099
||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||
Sbjct 972 ACTCCTAGCTACGAGTACCACACTGCCTTCAACGGGGTTACCCTAGGGATTGTTACCGGA 1031
Query 1100 GTGCAGCAAACGTACAGCCAATTCCACCACGAAGCTGCTCCACGAATCTTCTCACCAGAG 1159
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 GTGCAGCAAACGTACAGTCAATTCCACCACGAAGCTGCTCCACGAATCTTCTCACCAGAG 1091
Query 1160 CTCCCTATTTCATCCTACCTTGGTAGAGTCATGGTGGGAATACCGACGATACTCTTAGTG 1219
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1092 CTCCCTATGTCATCCTACCTTGGTAGAGTCATGGTGGGGATACCGACAATACTCTTAGTG 1151
Query 1220 AAGTTCTGCAGTAAATCTCTTGCAAAATGGACTTTACCAATGGTATCCAACGCACTTGGG 1279
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1152 AAGTTCTGCAGTAAATCTCTTGCAAAATGGACTTTACCAACAGTATCCAACGCACTTGGG 1211
Query 1280 ATTCCAATAAGATCCAGCATGTACATTCCCAAGCTCAAGG--G----G---TATGCAAGT 1330
|||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 1212 ATTCCAATAAGATCCAGCATGTACATTCCCAAGCTCAAGGTCGATAAGGGGTATGCAAGT 1271
Query 1331 GGGAAGAAGACAGACGAACCCAAGAATTCAGTTGGATATTTGCAGAAACTATGCGAGTTT 1390
||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| |
Sbjct 1272 GGGAAGAAGCCAGACGAACCCAAGAACTCAGTTGGATATTTGCAGAAACTATGTGAGCTC 1331
Query 1391 TTGAGCCACGACTCGTTTGATATTGATACTGGTATAAGGTTCTTCCAATATGCAGGCCTT 1450
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1332 TTGAGCCAGGACTCGTTTGATATTGATACTGGTATTAGGTTCTTCCAATATGCAGGCCTT 1391
Query 1451 GCCTGGTCCGTTGTTGATCTTGTTCCTTCACTATTCTCTTACGTTAACTTGTAGTAACAG 1510
|||||||| |||||||||||||||||||| ||||||||||| | ||||||||||| ||||
Sbjct 1392 GCCTGGTCTGTTGTTGATCTTGTTCCTTCGCTATTCTCTTATGCTAACTTGTAGTGACAG 1451
Query 1511 TTTCATTGTGTGAT 1524
|| |||||||||||
Sbjct 1452 TTCCATTGTGTGAT 1465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57973352890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5