BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58620.1
Length=2296
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486314 jgi|Araly1|486314|fgenesh2_kg.5__2306__AT3G58620.1 3118 0.0
> Ahg486314 jgi|Araly1|486314|fgenesh2_kg.5__2306__AT3G58620.1
Length=2117
Score = 3118 bits (1688), Expect = 0.0
Identities = 1966/2097 (94%), Gaps = 31/2097 (1%)
Strand=Plus/Plus
Query 66 GAGAAGATGTCACATTATAGAAGACATTCGCTAGAACCTTCCATTACCAGTAAATTCCGT 125
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 32 GAGAAGATGTCACATTATAGAAGACATTCGCTAGAACCTTCCATTACCATTAAATTCCGT 91
Query 126 GATTCTTTGAGTTTCCAACGAGACGATGACGTCATCAACAAACCAGATTTCCGAGAACTC 185
|||||||||| ||||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 92 GATTCTTTGAATTTCCAACGAGACGATGACGTCATCGACAAACCCGATTTTCGAGAACTC 151
Query 186 GATTTTG---------GTTCTCCGTTGAGGCCTCGTGGCTCCTCCTCCGCCGCTGCCACT 236
||||||| ||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 152 GATTTTGCTTCTCCCATTTCTCCGTTGAGGCCACGTGGCTCCTCCTCCGCCGCTGCGACT 211
Query 237 CCCGCCGCTAGTGGCAGCAGTTCAAGCTCCTCTGGTTCTGCTTCCGGAAAACCCGCTGTC 296
|| ||| |||||||||||||||||||||| ||||||||||||||||| ||||| || |||
Sbjct 212 CCTGCCCCTAGTGGCAGCAGTTCAAGCTCTTCTGGTTCTGCTTCCGGCAAACCGGCAGTC 271
Query 297 ACTTCTCAGTTTGCTAGACGGAGTCACTCCGGCGAGCTTTCCGGTTTAAGCCAGACCAGT 356
|||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||
Sbjct 272 ACTTCTCAGTTTGCTAGACGGAGTCACTCCGGCGAGTTTTCTGGTTTAAGCGAGACCAGT 331
Query 357 CCGGTTAAACCCGGAT-C-----CGTGAACCGGAATTTGAAACCGGGTCACAGAAGATCC 410
|||||||||||||||| | ||| ||||||| | |||||||||||||||||||||||
Sbjct 332 CCGGTTAAACCCGGATCCAGAAACGTTAACCGGAGTCTGAAACCGGGTCACAGAAGATCC 391
Query 411 GCTTCCGCTGGAACGCCGTTGATTTATTCCGGTTTGGGGTTCTCTCCGGTGAACAATAAC 470
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 392 GCTTCTGCTGGAACGCCGTTGATTTATTCCGGTTTGGGGTTCTCTCCGGTG------AAC 445
Query 471 AATAACAGTTCTCGCGGCGGAGGAAGCGGGGCTACTTCGCCGAACCCCGGCGTTTTACCT 530
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 446 AATAACAGTTCTCGCGGCGGAGGAAGCGGGGCTACCTCGCCGAATCCCGGCGTTTTACCT 505
Query 531 ACCGGAAACATTTGTCCATCGGGAAGGATCT-TAAAAACCGGAATGGCTACACGAGCCTC 589
|||||||||||||| || ||||| ||||| | | ||||||||||||||||||||||||||
Sbjct 506 ACCGGAAACATTTGCCCGTCGGGGAGGAT-TATGAAAACCGGAATGGCTACACGAGCCTC 564
Query 590 CGTTAGACCCGAGACTCTATGCACAGGCACGGCCAACTACGGCCACGGAAACATCATCCG 649
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 565 TGTTAGACCGGAGACTCTATGCACAGGCACGGCCAACTACGGCCACGGAAACATTATCCG 624
Query 650 CACCGGCGGAAAGGTGAGTCACGCGACGAAAGCGGCGGCGGAAATGAGTGACTCAGAGGA 709
|| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 625 CAGCGGCGGAAAGGTGAGTCACGCGACGAAAGCGGCGGCGGAAATGGGAGACTCAGAGGA 684
Query 710 GGTGAAGAAGGCAGGTAACGTAATGTATAGGAAAGGGAATTACGCCGAGGCATTGGCTCT 769
|| ||||||||||||||||| |||||||||||||||||||||||| || |||||||||||
Sbjct 685 GGCGAAGAAGGCAGGTAACGAAATGTATAGGAAAGGGAATTACGCTGAAGCATTGGCTCT 744
Query 770 TTACGACAGAGCTATCTCATTGTCACCGGAAAATCCAGCTTATAGAAGCAATCGTGCGGC 829
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 745 TTACGACAGAGCAATCTCATTGTCACCGGAAAATCCAGCTTACAGAAGCAATCGCGCGGC 804
Query 830 AGCGTTGGCTGCGTCAGGGAGGTTAGAAGAAGCAGTTAAAGAATGCCTTGAAGCTGTGAG 889
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 805 GGCCTTGGCTGCGTCAGGGAGGTTAGAGGAAGCAGTTAAAGAATGCCTTGAAGCTGTGAG 864
Query 890 ATGT-GATCCTTCTTACGCTAGAGCTCATCAGAGACTCGCTTCTCTTTATCTAAGATTGG 948
|| | ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 865 AT-TCGATCCTTCTTACGCTAGAGCTCATCAGAGACTCGCTTCTCTCTATCTCAGATTGG 923
Query 949 GAGAAGCTGAGAATGCGAGACGTCATCTTTGTGTTTCCGGACAATGTCCCGATCAAGCTG 1008
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
Sbjct 924 GAGAAGCTGAGAATGCGAGACGTCATCTTTGTTTTTCCGGGCAATGTCCCGATCAAGCCG 983
Query 1009 ATTTGCAGAGGTTGCAGACGCTTGAGAAGCATCTCAGACTGTGTACGGAGGCTCGAAAGA 1068
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 984 ATTTGCGGAGGTTGCAGACGCTTGAGAAACATCTCAGACTGTGTACGGAGGCTCGAAAGA 1043
Query 1069 TCGGTGATTGGAGAACGGTGATTAGCGAAATCGATGCAGCCATTGCAAATGGAGCTGATT 1128
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 TCGGTGATTGGAGAACGGTTATTAGCGAAATCGATGCAGCCATTGCAAATGGAGCTGATT 1103
Query 1129 CTTCTCCTCAGCTTGTAGCTTGTAAAGCTGAAGCCTTTTTGCGGCTTCATCAGATAAAGG 1188
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1104 CTTCTCCTCAGCTTGTAGCTTGTAAAGCAGAAGCCTTTTTGCGGCTTCATCAGATAAAGG 1163
Query 1189 ATTCAGATTTGTGTATATCCAGCATTCCGA-GATTGGATCATCACCATACTCAACCACCT 1247
|||| ||||| ||| | || | ||||||| || |||||||||| |||||||||||||||
Sbjct 1164 ATTCGGATTTATGTCTGTCTAATATTCCGAGGA-TGGATCATCATCATACTCAACCACCT 1222
Query 1248 GAGAAACTATTTGGTATAG-TATGTGATGCTTATGTGCTCTGTGTTCAAGCTCAAGTTGA 1306
| |||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 GCGAAACTGTTTGGTAT-GATATGTGATGCTTATGTGCTCTGTGTTCAAGCTCAAGTTGA 1281
Query 1307 TATGGCGTTAGGAAGATTTGAGAATGCGATTGTAAAGGTGGAGAGAGCCATGACGATTGA 1366
||||||||||||||||||||||| |||| |||| |||| |||||||||||||||||||||
Sbjct 1282 TATGGCGTTAGGAAGATTTGAGAGTGCGGTTGTCAAGGCGGAGAGAGCCATGACGATTGA 1341
Query 1367 TCATAGCAATAGTCCCGAGGTAGTATCGGTCTTAAACAATGTGAAGAATGTGGCGAAAGC 1426
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1342 TCATAGCAATAGTCCCGAGGTAGTATCGGTCTTAAACAATGTGAAGAATTTGGCAAAAGC 1401
Query 1427 TCGTACCCGAGGAAACGAGCTTTTTAGTTCGGGGAGATACTCGGAAGCGAGTGTGGCTTA 1486
||||||||| ||||||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct 1402 TCGTACCCGTGGAAACGAGCTCTTTAGTTCAGGGAGATACTCAGAGGCGAGTGTGGCTTA 1461
Query 1487 TGGGGACGGACTCAAGTT-GGATGCTTTCAATTCGGTTTTGTATTGTAATAGAGCGGCAT 1545
|||||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 1462 TGGGGATGGACTCAAGTTCGG-TGCTTTCAACTCGGTTTTGTATTGTAATAGAGCGGCAT 1520
Query 1546 GTTGGTTTAAACTCGGTATGTGGGAGAAATCTGTTGATGATTGTAATCAAGCGCTAAGAA 1605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 GTTGGTTTAAACTCGGTATGTGGGAGAAATCTGTTGATGATTGTAATCAAGCGCTAAGAA 1580
Query 1606 TTCAGCCTAGTTACACCAAAGCTCTTCTCCGAAGAGCTGCTTCGTATGGAAAGCTTGGCC 1665
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1581 TCCAGCCTAGTTACACCAAAGCTCTTCTCCGAAGAGCTGCTTCATATGGAAAGCTTGGCC 1640
Query 1666 GATGGGAGGATGCGGTCAGAGATTATGAAGTATTGAGAAAGGAACTTCCAGGAGACAGTG 1725
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1641 GATGGGAGGATGCGGTCAGAGATTATGAAGTATTGAGAAAGGAACTACCAGGAGACAGCG 1700
Query 1726 AGGTTGCTGAGTCTTTACAGAGAGCAAGGAACGCTCTATCGAACAAATCCGAAGAACCTA 1785
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1701 AGGTTGCTGAGTCTTTACAGAGAGCAAGGACCGCTCTATCGAACATATCCGAAGAACCTA 1760
Query 1786 AATATTTGGGATTCAATAACGAAGTTGAAGAAGTTTCGACCTTAGATAAGTTCAAGACCG 1845
|||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1761 AATACCTGGGATTCAATAACGAAGTTGAAGAAGTTTCGACCATAGATAAGTTTAAGACCG 1820
Query 1846 CAACATCACTGCCCGGAATCTCTGTGTTTCATTTCAAATCATCATCAAACCGGCAAAGCG 1905
|||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1821 CAACATCACTTCCCGGAATCTGTGTGTTTCATTTCAAATCATCATCAAACCGACAAAGCG 1880
Query 1906 AAGCAATATCTCCATTCGTCAACACTTTATGCTTACGGTATCCATTAGTACATTTTTTCA 1965
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 1881 AAGCAATATCTCCATTTGTCAACACTTTATGCTTACGATATCCATTAGTGCATTTCTTCA 1940
Query 1966 AGGTGGACGTAGAGGAGAGCTTGGCATTGGCGAAAGCAGAGAGCATCAAGAAAATTCCAA 2025
|||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1941 AGGTGGACGTGGAGGAGAGCTTGGCATTGGCGAAATCAGAGAGCATCAAGAAAGTTCCAA 2000
Query 2026 CGTTTAAGATTTATAAGAAGGGAGAGAAAGTGAAGGAAATGGTATGTCCTAGTCATCAGT 2085
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2001 CCTTTAAGATCTATAAGAAGGGAGAGAAAGTGAAGGAAATGGTGTGTCCTAGTCATCAGT 2060
Query 2086 TACTAGAGGACTCTGTTACGCATTTCCTCTTATAACATATCTCTCTTCTCATTCTTT 2142
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2061 TACTAGAGGACTCGGTCACGCATTTCCTCTTATAACATATCTCTCTTCTCATTCTTT 2117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86464856150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5