BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58680.1
Length=806
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938862 jgi|Araly1|938862|scaffold_503053.1 881 0.0
> Ahg938862 jgi|Araly1|938862|scaffold_503053.1
Length=580
Score = 881 bits (477), Expect = 0.0
Identities = 546/579 (94%), Gaps = 5/579 (1%)
Strand=Plus/Plus
Query 54 TAGAAAACAG-TTGAAGAAAG-AAAATC-ACAAGAGAAGCCATGGCCGGAATTGGACCGA 110
|||||| | | ||||| |||| |||||| | ||||||||||||||| ||| |||||||||
Sbjct 1 TAGAAAGC-GATTGAATAAAGAAAAATCTA-AAGAGAAGCCATGGCAGGATTTGGACCGA 58
Query 111 TTACTCAGGATTGGGAACCAGTTGTGATCCGCAAGAGAGCTCCTAACGCTGCAGCTAAGC 170
||||||||||||||||||||||||||||||| |||| |||||||||| |||| |||||||
Sbjct 59 TTACTCAGGATTGGGAACCAGTTGTGATCCGTAAGAAAGCTCCTAACTCTGCCGCTAAGC 118
Query 171 GCGACGAGAAGACTGTCAACGCCGCTCGTCGAAGCGGCGCCGATATTGAGACCGTTCGAA 230
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 119 GCGACGAGAAGACTGTCAACGCCGCTCGTCGAAGCGGCGCCGATATTGAGACCGTTCGCA 178
Query 231 AATTCAATGCTGGATCGAACAAGGCTGCATCAAGCGGCACCTCCTTGAACACAAAGAAGC 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AATTCAATGCTGGATCGAACAAGGCTGCATCAAGCGGCACCTCCTTGAACACAAAGAAGC 238
Query 291 TAGATGATGATACTGAGAACTTATCTCATGATCGTGTGCCCACTGAATTGAAGAAAGCCA 350
|||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 239 TAGATGATGACACTGAGAACTTATCTCATGATCGTGTACCCACTGAGTTGAAGAAAGCCA 298
Query 351 TCATGCAAGCTAGAGGGGAGAAGAAGCTGACTCAGTCCCAACTTGCCCATCTGATCAATG 410
|||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 299 TCATGCAAGCCAGAGGGGAGAAGAAGCTGACTCAGTCGCAGCTTGCCCAACTGATCAATG 358
Query 411 AGAAGCCACAAGTGATCCAAGAATACGAGTCTGGGAAAGCAATTCCGAATCAACAGATCC 470
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 359 AGAAGCCACAAGTGATCCAAGAATACGAGTCAGGTAAAGCAATTCCGAATCAACAGATCC 418
Query 471 TTTCAAAGCTGGAGAGGGCACTTGGTGCTAAACTCCGTGGAAAGAAGTAGAAGTGTAGAA 530
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 TCTCTAAGCTGGAGAGGGCACTTGGTGCTAAACTACGTGGAAAGAAGTAGAAGTGTAGAA 478
Query 531 CAAAGCTCTTAAAGGTAACAACAAAAGCTGATCGCAGTTTCTCTCCAGTCCACATGCTTT 590
|||||||||| ||||||| |||||||||| ||| |||||||||| ||||||| |||||||
Sbjct 479 CAAAGCTCTTGAAGGTAAAAACAAAAGCTAATCTCAGTTTCTCTTCAGTCCAGATGCTTT 538
Query 591 ACCATATCCTAAAAACTATATCTATGTATGGTTTGGTTT 629
||||||||||| |||||||||||||||||||||||||||
Sbjct 539 ACCATATCCTAGAAACTATATCTATGTATGGTTTGGTTT 577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29773998177
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5