BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58750.1
Length=2027
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486329 jgi|Araly1|486329|fgenesh2_kg.5__2321__AT3G58750.1 3179 0.0
Ahg898830 jgi|Araly1|898830|Al_scaffold_0005_2796 1552 0.0
Ahg483376 jgi|Araly1|483376|fgenesh2_kg.4__2436__AT2G42790.1 1469 0.0
> Ahg486329 jgi|Araly1|486329|fgenesh2_kg.5__2321__AT3G58750.1
Length=1972
Score = 3179 bits (1721), Expect = 0.0
Identities = 1882/1957 (96%), Gaps = 22/1957 (1%)
Strand=Plus/Plus
Query 4 GATCTAAGCTGAATAATCTTATCACCGTCGAGCTTTGGATAAACAATGGATCCGATTTTC 63
|||| ||||||||||||||||||||||| || ||||||||||||||| |||||| |||||
Sbjct 1 GATCCAAGCTGAATAATCTTATCACCGTTGATCTTTGGATAAACAATAGATCCG-TTTTC 59
Query 64 AATACACTTACCCGCAGAGAATAAAAATATCAGCTACTACCAAAATTAGCAAATGCAGGA 123
|| || |||||||| ||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct 60 AAAACTCTTACCCGTAGAGAATAAAAATCTCAGCTACTACCAAAATTAGGAAATTCAGGA 119
Query 124 TACAAAAGCCAAGTCACTTACCGCAAGATTG--T-ttcttcttcttcttcttcgcttcct 180
||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 120 TACAAAAGCCAAGTCACTTACCGAAAGATTGTTTCTTCTTCTTCTTCTTCTTCGCTTCCT 179
Query 181 tccttTGAAATTGAATTCAGATAttttttttaaaattttttGAGAGGAAGAAATGGAGAT 240
|||||||||||||||||||| | ||||| |||||||||| |||| ||||||||||
Sbjct 180 TCCTTTGAAATTGAATTCAG--A---TTTTT---ATTTTTTGAGGGGAA-AAATGGAGAT 230
Query 241 TTCGCAGAGAGTGAAAGCTAGATTAGCCGTTCTCACCGCGCATTTGGCGGTGTCTGATAC 300
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 231 TTCGCAGAGAGTGAAAGCTCGATTAGCCGTTCTCACCGCGCATTTAGCGGTGTCTGATAC 290
Query 301 CGTCGGATTGGAACAGGTGTTGCCGGCGATCGCGCCATGGTGTACATCGGCTCACATTAC 360
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 291 CGTCGGATTGGAACAGGTGTTGCCGGCGATCGAGCCATGGTGCACATCGGCTCACATTAC 350
Query 361 CGCTGCACCTCATGGATCACTCAAAGGAAACTTGACGATCGTCGATGAGCGTACGGGGAA 420
||||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 351 CGCTGCACCGCATGGATCGCTTAAAGGAAATTTGACGATCGTCGATGAGCGTACGGGGAA 410
Query 421 GAAATATCAGGTCCCTGTCTCAGAGCATGGTACCGTTAAAGCCGTTGATCTCAAGAAGAT 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GAAATATCAGGTCCCAGTCTCAGAGCATGGTACCGTTAAAGCCGTTGATCTCAAGAAGAT 470
Query 481 AACGACGGGGAAGGATGATAAGGGGCTGAAGTTGTACGATCCTGGTTACTTGAACACGGC 540
|||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 471 AACGACGGGGAAAGATGACAAGGGGCTTAAGTTGTACGATCCAGGTTACTTGAACACGGC 530
Query 541 TCCGGTTCGATCTTCGATTTGTTACATCGACGGAGATGAAGGAATCTTACGTTATCGGGG 600
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 531 TCCGGTTCGATCTTCGATTTGTTACATCGACGGAGATGAAGGAATCCTACGTTATCGGGG 590
Query 601 ATACCCAATTGAAGAGTTGGCTGAGAGCAGTACTTTTATTGAGGTTGCTTATCTCCTCAT 660
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 ATACCCAATCGAAGAATTGGCTGAGAGCAGTACTTTTATTGAGGTTGCTTATCTCCTCAT 650
Query 661 GTATGGAAATCTGCCTTCTCAAAGTCAGCTAGCTGATTGGGAGTTCACTGTTTCTCAGCA 720
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 651 GTATGGAAATCTGCCTTCTCAAAGTCAGCTAGCTGATTGGGAGTTTACGGTTTCTCAGCA 710
Query 721 TTCAGCTGTGCCACAAGGAGTATTGGATATCATACAGTCCATGCCTCATGATGCACACCC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TTCAGCTGTGCCACAAGGAGTATTGGATATCATACAGTCCATGCCTCATGATGCACACCC 770
Query 781 AATGGGAGTTCTTGTGAGTGCCATGAGTGCACTTTCTATCTTTCACCCTGATGCAAATCC 840
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 771 AATGGGAGTTCTTGTGAGTGCCATGAGTGCACTTTCTATCTTTCATCCTGATGCAAATCC 830
Query 841 TGCTCTTAGTGGCCAAGACATTTACAAGTCAAAACAAGTTCGTGATAAACAGATTGTTCG 900
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TGCTCTTAGTGGCCAAGATATTTACAAGTCAAAACAAGTTCGTGATAAACAGATTGTTCG 890
Query 901 CATTCTCGGAAAGGCACCAACAATTGCAGCAGCTGCTTATTTGAGGACGGCAGGCAGGCC 960
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 891 TATTCTCGGAAAGGCACCAACAATTGCAGCGGCTGCTTATTTGAGGACGGCAGGCAGGCC 950
Query 961 TCCTGTTCTTCCTTCGGCCAACCTTTCTTATTCAGAGAATTTCCTCTATATGCTGGATTC 1020
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TCCTGTTCTTCCTTCGGGCAACCTTTCTTATTCAGAGAATTTCCTCTATATGCTGGATTC 1010
Query 1021 AATGGGCAATAGGTCTTACAAGCCTAATCCTCGTTTGGCTCGAGTGCTGGACATCCTCTT 1080
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 AATGGGAAATAGGTCTTACAAGCCTAATCCTCGTTTGGCTCGAGTGCTGGACATCCTCTT 1070
Query 1081 CATACTGCATGCTGAACATGAAATGAACTGCTCTACTGCTGCTGCTCGGCATCTTGCCTC 1140
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1071 CATACTGCATGCTGAACATGAGATGAACTGCTCTACTGCTGCTGCTCGGCATCTTGCCTC 1130
Query 1141 TAGTGGTGTTGATGTGTACACCGCATGTGCTGGAGCTGTTGGGGCGCTTTATGGTCCACT 1200
||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 1131 TAGTGGTGTTGATGTGTACACTGCTTGTGCTGGAGCTGTTGGAGCGCTTTATGGTCCACT 1190
Query 1201 TCATGGTGGCGCGAACGAGGCCGTGCTTAAGATGTTAGCAGAGATTGGGACTGCTGAAAA 1260
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1191 TCATGGTGGCGCGAACGAGGCTGTGCTTAAGATGTTAGCAGAGATTGGGACAGCTGAAAA 1250
Query 1261 TATTCCAGATTTCATTGAAGGCGTGAAGAACAGAAAGAGGAAGATGTCAGGTTTTGGACA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 TATTCCAGATTTCATTGAAGGCGTGAAGAACAGAAAGAGGAAGATGTCAGGTTTTGGACA 1310
Query 1321 TCGTGTTTACAAAAACTATGACCCCCGAGCAAAAGTTATaaaaaaaCTGGCAGATGAAGT 1380
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1311 TCGTGTTTACAAAAACTATGACCCCCGAGCAAAAGTCATAAAAAAACTGGCAGATGAAGT 1370
Query 1381 GTTCTCCATTGTTGGTAGGGATCCTCTCATCGAGGTAGCAGTTGCTCTAGAGAAGGCGGC 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 GTTCTCCATTGTTGGTAGGGATCCTCTCATCGAGGTAGCAGTTGCTCTAGAGAAGGCGGC 1430
Query 1441 ACTGTCTGATGAATATTTTGTTAAGAGAAAGCTGTACCCAAATGTTGATTTCTACTCTGG 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 ACTGTCTGATGAATATTTTGTTAAGAGAAAGCTGTACCCAAATGTTGATTTCTACTCTGG 1490
Query 1501 ATTAATCTATAGGGCAATGGGATTCCCACCAGAATTCTTCACAGTCCTGTTCGCAGTCCC 1560
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1491 ATTAATATATAGGGCAATGGGATTCCCACCAGAATTCTTCACAGTCCTATTCGCAGTCCC 1550
Query 1561 GCGTATGGCTGGATACTTGTCACACTGGCGTGAGTCGTTAGATGATCCTGACACTAGGAT 1620
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1551 GCGTATGGCTGGATACTTGTCGCACTGGCGTGAGTCGTTAGATGATCCTGACACTAGGAT 1610
Query 1621 CATGAGACCCCAACAGGCCTATACTGGAGTGTGGATGAGGCATTACGAGCCAGTGAGAGA 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 CATGAGACCCCAACAGGCCTATACTGGAGTGTGGATGAGGCATTACGAGCCAGTGAGAGA 1670
Query 1681 ACGAACGTTATCAAGTGATTC-GGATAAGGATAAGTTTGGTCAAGTTTCCATTTCGAATG 1739
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1671 ACGAACGTTATCAAGTGATTCAGG-TACGGATAAGTTTGGTCAAGTTTCCATTTCGAATG 1729
Query 1740 CATCAAGAAGGCGTTTAGCTGGATCATCTGCCCTTTAGTCTCAATCCTA-ATACTCACCA 1798
||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 1730 CATCAAGAAGGCGTTTAGCTGGATCATCTGCCCTTTAGTCTCAATCCTACA-ACACACCA 1788
Query 1799 ATAAAGAAGAAAACATTGGGATACCTCTGGGAAAACAAGAGAGTCTTCTCAACAACATGT 1858
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||
Sbjct 1789 ATAAAGAAGAAAACATTGGGATACCTCTGGGAAAATAAGAGAGTCTCCTCAACAAC-TGT 1847
Query 1859 GTTGTTTTCTTTCTCTTATTCTTAAACACTTAATAATACAACCCTATTCTTATTGTTTGT 1918
|||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1848 GTTGTTTTCTTTCTTTTATAATTAAACACTTAATAATACA-CCCTATTCTTATTGTTTGT 1906
Query 1919 CTGTTATTTTAAAA-TGTTATGATTTAATAATAATAA 1954
||||||||| |||| | ||||||||||||||||||||
Sbjct 1907 CTGTTATTT-AAAACT-TTATGATTTAATAATAATAA 1941
> Ahg898830 jgi|Araly1|898830|Al_scaffold_0005_2796
Length=1443
Score = 1552 bits (840), Expect = 0.0
Identities = 1264/1465 (86%), Gaps = 43/1465 (3%)
Strand=Plus/Plus
Query 233 ATGGAGATTTCGCAGAGAG-TGAAAGCTAGATTAGCCGTTCTCACCGCGCATTTGGCGGT 291
||||||||| || |||||| | | ||| |||||||||||||||| ||||| |||||||
Sbjct 1 ATGGAGATTCCGGAGAGAGCT-AGCGCTCGATTAGCCGTTCTCACTGCGCACTTGGCGGC 59
Query 292 GTCTGATACCGTCGGATTGGAACAGGTGTTGCCGGCGATCGCGCCATGGTGTACATCGGC 351
|||| | | | || | |||||||||||| |||||| ||| ||||| ||||| |
Sbjct 60 ATCTG--A--G-CCGACT----CAGGTGTTGCCGACGATCGAGCCGTGGTGCACATCATC 110
Query 352 TCACATTACCGCTGCACCTCATGGATCACTCAAAGGAAACTTGACGATCGTCGATGAGCG 411
|||||||| ||| |||| |||||||| || |||||||||||||||||||||| || ||
Sbjct 111 TCACATTAGTGCTACACCGCATGGATCCCTTGAAGGAAACTTGACGATCGTCGACGAACG 170
Query 412 TACGGGGAAGAAATATCAGGTCCCTGTCTCAGAGCATGGTACCGTTAAAGCCGTTGATCT 471
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TACGGGTAAAAAATATCAGGTCCCTGTCTCAGAGCATGGTACCGTTAAAGCCGTTGATCT 230
Query 472 CAAGAAGATAACGAC-GGGGAAGGATGATAAGGGGCTGAAGTTGTACGATCCTGGTTACT 530
||||||||||||||| ||||| |||||| |||||||| ||||| ||||||||||||||||
Sbjct 231 CAAGAAGATAACGACAGGGGA-GGATGACAAGGGGCTTAAGTTATACGATCCTGGTTACT 289
Query 531 TGAACACGGCTCCGGTTCGATCTTCGATTTGTTACATCGACGGAGATGAAGGAATCTTAC 590
| ||||||||||| |||||||||||||||| ||||||||| ||||||||||| ||| | |
Sbjct 290 TAAACACGGCTCCTGTTCGATCTTCGATTTCTTACATCGATGGAGATGAAGGGATCCTCC 349
Query 591 GTTATCGGGGATACCCAATTGAAGAGTTGGCTGAGAGCAGTACTTTTATTGAGGTTGCTT 650
|||| ||||||||| || | || ||||||||||||| ||||||| || |||||| |||
Sbjct 350 GTTACCGGGGATACTCAGTCGAGGAGTTGGCTGAGAAAAGTACTTATACAGAGGTTACTT 409
Query 651 ATCTCCTCATGTATGGAAATCTGCCTTCTCAAAGTCAGCTAGCTGATTGGGAGTTCACTG 710
||||||| || ||||| ||||||||||||||| | |||||||||||||||||||| | |
Sbjct 410 ATCTCCTAATTTATGGGAATCTGCCTTCTCAACGACAGCTAGCTGATTGGGAGTTTGC-G 468
Query 711 -TTTCTCAGCATTCAGCTGTGCCACAAGGAGTATTGGATATCATACAGTCCATGCCTCAT 769
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 469 ATTTCTCAGAATTCAGCTGTGCCACAAGGAGTATTGGATCTCATACAGTCCATGCCTCAT 528
Query 770 GATGCACACCCAATGGGAGTTCTTGTGAGTGCCATGAGTGCACTTTCTATCTTTCACCCT 829
|||| ||| ||||| |||| |||||| | ||| |||||||||||||| |||||| | |||
Sbjct 529 GATGTACATCCAATAGGAGCTCTTGTCACTGCAATGAGTGCACTTTCCATCTTTTATCCT 588
Query 830 GATGCAAATCCTGCTCTTAGTGG-CCAAGACATTTACAAGTCAAAACAAGTTCGTGATAA 888
|||||||||||| |||||| ||| || || ||||| ||||||||||||||||||||||
Sbjct 589 GATGCAAATCCTTCTCTTA-TGGGCCTAGGTGTTTACCAGTCAAAACAAGTTCGTGATAA 647
Query 889 ACAGATTGTTCGCATTCTCGGAAAGGCACCAACAATTGCAGCAGCTGCTTATTTGAGGAC 948
||||||| |||| ||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 648 ACAGATTTTTCGTATTCTTGGACAGGCACCAACAATTGCAGCAGCTGCTTATTTGAGGAA 707
Query 949 GGCAGGCAGGCCTCCTGTTCTTCCTTCG-GCCAACCTTTCTTATTCAGAGAATTTCCTCT 1007
|||||||| ||||||||||| |||| | || ||||||||||||||||||||||||||||
Sbjct 708 GGCAGGCAAGCCTCCTGTTCAACCTTTGAGC-AACCTTTCTTATTCAGAGAATTTCCTCT 766
Query 1008 ATATGCTGGATTCAATGGGCAATAGGTCTTACAAGCCTAATCCTCGTTTGGCTCGAGTGC 1067
||||| |||| |||||||| |||| ||||||||||||||||||||| | |||||||||
Sbjct 767 ATATGGTGGAATCAATGGGAAATAAGTCTTACAAGCCTAATCCTCGGCTAGCTCGAGTGT 826
Query 1068 TGGACATCCTCTTCATACTGCATGCTGAACATGAAATGAACTGCTCTACTGCTGCTGCTC 1127
||||||| ||||||| ||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 827 TGGACATTATCTTCATTCTGCATGTTGAACATGAGATGAACTGCTCTACTGCTGCTGCTC 886
Query 1128 GGCATCTTGCCTCTAGTGGTGTTGATGTGTACACCGCATGT-GCTGGAGCTGTTGGGGCG 1186
|||||||| |||||||||||||||||||||| || || ||| || |||| |||||| ||
Sbjct 887 GGCATCTTTCCTCTAGTGGTGTTGATGTGTATACTGC-TGTTGCGGGAGGTGTTGGAGC- 944
Query 1187 C-TTTATGGTCCACTTCATGGTGGCGCGAAC-GAGGC--CGTGCTTAAGATGTTAGCAGA 1242
| |||||||||||||||||||||| || || ||||| || | |||| |||||| ||||
Sbjct 945 CATTTATGGTCCACTTCATGGTGGTGC-AATTGAGGCTACG-G-TTAACATGTTATCAGA 1001
Query 1243 GATTGGGACTGCTGAAAATATTCCAGATTTCATTGAAGGCGTGAAGAACA-GAAAGAGGA 1301
|||||| |||| ||||||||||||||| ||||||||| |||||||||| | ||| |||||
Sbjct 1002 GATTGGCACTGTTGAAAATATTCCAGAGTTCATTGAAAGCGTGAAGAATAAGAA-GAGGA 1060
Query 1302 AGATGTCAGGTTTTGGACATCGTGTTTACAAAAACTATGACCCCCGAGCAAAAGTTATaa 1361
|| |||| |||||||| || |||||||||||||| || || || |||| |||||| | |
Sbjct 1061 AGTTGTCGGGTTTTGGTCACCGTGTTTACAAAAAATACGATCCTCGAGGAAAAGTCGTTA 1120
Query 1362 aaaaaCTGGCAGATGAAGTGTTCTCCATTGTTGGTAGGGATCCTCTCATCGAGGTAGCAG 1421
|||||||||| ||| |||||||||||||| |||| | ||||||||| | ||||||| ||
Sbjct 1121 AAAAACTGGCGGATCAAGTGTTCTCCATTCTTGGAAAGGATCCTCTGTTTGAGGTAGGAG 1180
Query 1422 TTGCTCTAGAGAAGGCGGCACTGTCTGATGAATATTTTGTTAAGAGAAAGCTGTACCCAA 1481
||||||||||||||||||||| || ||||||||||| |||| |||||||| |||||||
Sbjct 1181 ATGCTCTAGAGAAGGCGGCACTCTCGGATGAATATTTCATTAAAAGAAAGCTTTACCCAA 1240
Query 1482 ATGTTGATTTCTACTCTGGATTAATCTATAGGGCAATGGGATTCCCACCAGAATTCTTCA 1541
||| ||||||||||||||||||||||||||||||||||||| ||||| || |||| |
Sbjct 1241 ATGCTGATTTCTACTCTGGATTAATCTATAGGGCAATGGGAATCCCATCATCATTC---A 1297
Query 1542 CAGTCCTGTTCGCAGTCCCGCGTATGGCTGGATACTTGTCACACTGGCGTGAGTCGTTAG 1601
| | |||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1298 ---T---G---GCAGTCGCACGTATTGCTGGATACTTGTCACACTGGCGTGAGTCGTTAG 1348
Query 1602 ATGATCCTGACACTAGGATCATGAGACCCCAACAGGCCTATACTGGAGTGTGGATGAGGC 1661
||||||||||||| | ||||||||||||||| |||| |||||||||| || || | ||||
Sbjct 1349 ATGATCCTGACACAAAGATCATGAGACCCCAGCAGGTCTATACTGGAATGGGGCTAAGGC 1408
Query 1662 ATTACGAGCCAGTGAGAGAACGAAC 1686
|||||||| |||||||||| ||||
Sbjct 1409 GTTACGAGCTAGTGAGAGAAAGAAC 1433
> Ahg483376 jgi|Araly1|483376|fgenesh2_kg.4__2436__AT2G42790.1
Length=3154
Score = 1469 bits (795), Expect = 0.0
Identities = 1215/1417 (86%), Gaps = 31/1417 (2%)
Strand=Plus/Plus
Query 365 GCACCTCATGGATCACTCAAAGGAA-ACTTGACGATCGTCGATGAGCGTACGGGGAAGAA 423
||||| | |||||| | ||||||| || ||||||||||||| || || || ||||| ||
Sbjct 119 GCACCGCTTGGATCTTTGAAAGGAACAC-TGACGATCGTCGACGAACGCACCGGGAA-AA 176
Query 424 A-TATCAGGTCCCTGTCTCAGA-GCATGGTACCGTTAAAGCCGTTGATCTCAAGAAGATA 481
| ||| | || || |||||||| | ||||||||||||||||||||||| |||| ||||||
Sbjct 177 AGTATAAAGTTCCGGTCTCAGATG-ATGGTACCGTTAAAGCCGTTGATTTCAAAAAGATA 235
Query 482 ACGACGGGGAAGGATGATAAGGGGCTGAAGTTGTACGATCCTGGTTACTTGAACACGGCT 541
| || |||||||| || ||||| || || || |||||||| ||||||||||||||||||
Sbjct 236 GCTACCGGGAAGGAAGACAAGGGCCTTAAATTATACGATCCAGGTTACTTGAACACGGCT 295
Query 542 CCGGTTCGATCTTCGATTTGTTACATCGACGGAGATGAAGGAATCTTACGTTATCGGGGA 601
|| |||||||||||||||| ||||||||| ||||||||||| ||| | ||||| || ||
Sbjct 296 CCTGTTCGATCTTCGATTTCTTACATCGATGGAGATGAAGGGATCCTCCGTTACCGTGGC 355
Query 602 TACCCAATTGAAGAGTTGGCTGAGAGCAGTACTTTTATTGAGGTTGCTTATCTCCTCATG 661
||||||||||| || ||||||||| ||| |||||| | ||||| |||||||| ||||||
Sbjct 356 TACCCAATTGAGGAAATGGCTGAGAACAGCACTTTTCTGGAGGTGGCTTATCTTCTCATG 415
Query 662 TATGGAAATCTGCCTTCTCAAAGTCAGCTAGCTGATTGGGAGTTCACTGTTTCTCAGCAT 721
||||| |||||||| ||| ||||||||||| | ||||||||||| | ||||||||||||
Sbjct 416 TATGGGAATCTGCCCTCTGAAAGTCAGCTATCGGATTGGGAGTTTGCAGTTTCTCAGCAT 475
Query 722 TCAGCTGTGCCACAAGGAGTATTGGATATCATACAGTCCATGCCTCATGATGCACACCCA 781
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 476 TCAGCTGTGCCACAAGGAGTATTAGATATTATACAGTCTATGCCTCATGATGCACACCCA 535
Query 782 ATGGGAGTTCTTGTGAGTGCCATGAGTGCACTTTCTATCTTTCACCCTGATGCAAATCCT 841
|||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||
Sbjct 536 ATGGGAGTTCTTGTGAGTGCAATGAGTGCGCTTTCCATCTTTCATCCTGATGCAAATCCT 595
Query 842 GCTCTTAGTGGCCAAGACATTTACAAGTCAAAACAAGTTCGTGATAAACAGATTGTTCGC 901
|||||||| ||||| || |||||| | || ||||||||| | |||||||| ||| |||||
Sbjct 596 GCTCTTAGGGGCCAGGATATTTACGATTCTAAACAAGTTAGAGATAAACAAATTATTCGC 655
Query 902 ATTCTCGGAAAGGCACCAACAATTGCAGCAGCTGCTTATTTGAGGACGGCAGGCAGGCCT 961
||| | ||||||||||| ||||||||||||||||||||| |||||| |||||| ||||||
Sbjct 656 ATTATTGGAAAGGCACCTACAATTGCAGCAGCTGCTTATCTGAGGATGGCAGGGAGGCCT 715
Query 962 CCTGTTCTTCCTTC-GGCCAACCTTTCTTATTCAGAGAATTTCCTCTATATGCTGGATTC 1020
||||||||||| || || |||||| ||||| |||| |||||||||||||||||||||||
Sbjct 716 CCTGTTCTTCCCTCAGGA-AACCTTCCTTATGCAGATAATTTCCTCTATATGCTGGATTC 774
Query 1021 AATGGGCAATAGGTCTTACAAGCCTAATCCTCGTTTGGCTCGAGTGCTGGACATCCTCTT 1080
|||| ||||| || ||||| ||||||||||| ||||||| || |||||||||||||
Sbjct 775 CCTGGGAAATAGATCCTACAAACCTAATCCTCGGCTGGCTCGGGTTTTGGACATCCTCTT 834
Query 1081 CATACTGCATGCTGAACATGAAATGAACTGCTCTACTGCTGCTGCTCGGCATCTTGCCTC 1140
|||||||||||| || ||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 835 CATACTGCATGCAGAGCATGAAATGAACTGCTCCACCGCTGCTGCTCGACATCTTGCCTC 894
Query 1141 TAGTGGTGTTGATGTGTACACCGCATGT-GCTGGAGCTGTTGGG-GCGCTTTATGGTCCA 1198
||| ||||||||||||||||| || ||| ||||||||||| ||| |||||||||||||||
Sbjct 895 TAGCGGTGTTGATGTGTACACTGC-TGTTGCTGGAGCTGT-GGGAGCGCTTTATGGTCCA 952
Query 1199 CTTCATGGTGGCGCGAACGAGGCCGTGCTTAAGATGTTAG-CAGAGATTGGGACTGCTGA 1257
||||||||||| || |||||||| |||||||||||||| | ||||||||||||||| |||
Sbjct 953 CTTCATGGTGGTGCAAACGAGGCTGTGCTTAAGATGTT-GTCAGAGATTGGGACTGTTGA 1011
Query 1258 AAATATTCCAGATTTCATTGAAGGCGTGAAGAACAGAAAGAGGAAGATGTCAGGTTTTGG 1317
|||||||||||| ||||| || || ||||||||||| |||||||||||||| ||||||||
Sbjct 1012 AAATATTCCAGAGTTCATCGAGGGTGTGAAGAACAGGAAGAGGAAGATGTCTGGTTTTGG 1071
Query 1318 ACATCGTGTTTACAAAAACTATGACCCCCGAGCAAAAGTTATaaaaaaaCTGGCAGATGA 1377
||| ||||| ||||||||||||||||| ||||| ||||| || || || ||||| |||||
Sbjct 1072 ACACCGTGTGTACAAAAACTATGACCCTCGAGCTAAAGTCATCAAGAACCTGGCTGATGA 1131
Query 1378 AGTGTTCTCCATTGTTGGTAGGGATCCTCTCATCGAGGTAGCAGTTGCTCTAGAGAAGGC 1437
||| || ||||||||||| | ||||||||| || |||||||| |||||||| ||||||||
Sbjct 1132 AGTATTTTCCATTGTTGGAAAGGATCCTCTAATTGAGGTAGCTGTTGCTCTTGAGAAGGC 1191
Query 1438 GGCACTGTCTGATGAATATTTTGTTAAGAGAAAGCTGTACCCAAATGTTGATTTCTACTC 1497
|| || ||||| || || ||||||||||||||||| || ||||||||||||||||||||
Sbjct 1192 AGCTCTCTCTGACGATTACTTTGTTAAGAGAAAGCTTTATCCAAATGTTGATTTCTACTC 1251
Query 1498 TGGATTAATCTATAGGGCAATGGGATTCCCACCAGAATTCTTCACAGTCCTGTTCGC-AG 1556
|||||||| || |||||||||||||| |||||||| |||||||| ||| | ||||| |
Sbjct 1252 CGGATTAATATACAGGGCAATGGGATTTCCACCAGAGTTCTTCACGGTCTTATTCGCGAT 1311
Query 1557 TCC-CGCGTATGGCTGGATACTTGTCACACTGGCGTGAGTCGTTAGATGATCCTGACACT 1615
||| ||| ||||||||||||||||| || ||| |||||||| ||||||||||||||
Sbjct 1312 TCCTCGC--ATGGCTGGATACTTGTCGCATTGGAAAGAGTCGTTGGATGATCCTGACACC 1369
Query 1616 AGGATCATGAGACCCCAACAGGCCTATACTGGAGTGTGGATGAGGCATTACGA-GCCAGT 1674
| |||||||||||| ||||||| || || || |||||| ||||||||||| | ||||||
Sbjct 1370 AAGATCATGAGACCACAACAGGTGTACACAGGCGTGTGGCTGAGGCATTAC-ACGCCAGT 1428
Query 1675 GAGAGA-ACGAAC-GTTATCA-AGTGATTCGGATA-AG--G-ATAAGTTTGGTCAAGTTT 1727
|||||| | ||| || | | | ||| || | | || | | || || |||||||| |
Sbjct 1429 GAGAGAGA-GAATTGTGA-CGGA-TGACTCTAA-AGAGTCGGACAAATTGGGTCAAGTCT 1484
Query 1728 CCATTTCGAATGCATCAAGAAGGCGTTTAGCTGGATC 1764
| | ||| |||||||||||||| ||||| ||||||||
Sbjct 1485 CGACTTCAAATGCATCAAGAAGACGTTTGGCTGGATC 1521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76218580245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5