BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G58790.1 Length=2359 Score E Sequences producing significant alignments: (Bits) Value Ahg938876 jgi|Araly1|938876|scaffold_503067.1 2662 0.0 > Ahg938876 jgi|Araly1|938876|scaffold_503067.1 Length=1657 Score = 2662 bits (1441), Expect = 0.0 Identities = 1590/1663 (96%), Gaps = 6/1663 (0%) Strand=Plus/Plus Query 333 GTTAGGGAAACTGTGAAGAAATGAAGTTTTACATATCAGCGACGGGGATTAAGAAGGTTA 392 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1 GTTAGGGAAACTGTGAAGAAATGAAGTTTTACATATCGGCGACGGGGATTAAGAAGGTTA 60 Query 393 CGATATCAAATCCCGGCGTCGGAATCGGTAAAGGAAGCGGAGGATGTGCGGCTGCAGCGG 452 | |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 61 CCATATCAAATCCCGGCGTCGGAATCGGAAAAGGAAGCGGAGGATGCGCGGCTGCAGCGG 120 Query 453 CGGCGTTAGCAGCGCGGAGATTCTCTAGTCGCACGTTGTTACTGTTGCTGCTGCTGCTCG 512 |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 121 CGGCGTTAGCAGCGCGGAGATTCTCTGGTCGGACGTTGTTACTGTTGCTGCTGCTGCTCG 180 Query 513 CTATCGTCCTCCCTTTTATCTTCGTCAGGTTCGCGTTTCTCGTCCTCGAATCTGCCTCCG 572 | |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 181 CCATCGTCCTCCCTTTTATCTTCGTCAGATTCGCGTTTCTCGTCCTCGAATCCGCCTCCG 240 Query 573 TTTGCGATTCACCACTCGATTGCATGGGACTCAGACTTTTCCGTGGGGGCGACACATCTC 632 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 241 TTTGCGATTCACCACTCGATTGCATGGGACTGAGACTTTTCCGTGGGGGCGACACATCTC 300 Query 633 TGAAAATTGGGGAAGAGTTGACACGGGCTCTAGTGGAAGAGACGACAGATCATCAGGACG 692 |||||||| |||||||||||||||| |||||||||| | ||| ||||| |||||||| Sbjct 301 TGAAAATTCGGGAAGAGTTGACACGAGCTCTAGTGG-A-AGA-GACAG---ATCAGGACT 354 Query 693 TTAATGGAAGAGGAACGAAGGGATCATTGGAGTCATTCGACGACCTTGTTAAGGAGATGA 752 ||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||| Sbjct 355 TTAATGGAAGAGGAAAAAAAGGATCATTGGAGTCATTCGACGACCTTGTCAAGGAGATGA 414 Query 753 CGTTAAAACGCCGTGACATAAGGGCGTTTGCTTCCGTGACTAAGAAGATGCTGTTGCAGA 812 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 415 CGTTAAAACGCCGTGATATAAGGGCGTTTGCTTCCGTAACTAAGAAGATGCTGTTGCAGA 474 Query 813 TGGAACGTAAAGTCCAATCAGCGAAACATCATGAGTTAGTGTACTGGCATTTAGCCTCTC 872 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 TGGAGCGTAAAGTCCAATCAGCGAAACATCATGAGTTAGTGTACTGGCATTTAGCCTCTC 534 Query 873 ACGGTATTCCTAAAAGCCTCCATTGCCTTTCCCTCAGATTAACTGAAGAGTACTCTGTAA 932 |||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 535 ACGGTATTCCCAAAAGCCTTCATTGCCTTTCCCTCAGATTAACTGAAGAGTACTCGGTAA 594 Query 933 ATGCAATGGCTCGAATGCGTTTGCCTCCGCCTGAGTCCGTATCACGTCTGACCGACCCAT 992 |||||||||||||||||||||||||||||||||| ||||| || ||| |||||||||||| Sbjct 595 ATGCAATGGCTCGAATGCGTTTGCCTCCGCCTGAATCCGTCTCTCGTTTGACCGACCCAT 654 Query 993 CTTTTCATCATATTGTCCTCCTGACTGACAATGTCCTTGCTGCCTCTGTCGTCATATCGT 1052 ||||||| ||||||||| || |||| ||||||||||| |||||||||||||||||||| | Sbjct 655 CTTTTCACCATATTGTCATCTTGACCGACAATGTCCTGGCTGCCTCTGTCGTCATATCTT 714 Query 1053 CTACTGTACAAAACGCTGTGAATCCCGAGAAGTTTGTCTTTCATATTGTTACCGATAAGA 1112 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 715 CTACTGTACAGAACGCTGTGAATCCCGAGAAGTTCGTCTTTCATATTGTTACCGATAAAA 774 Query 1113 AAACCTATACCCCTATGCATGCTTGGTTTGCTATCAACTCTGCTTCATCACCAGTTGTTG 1172 ||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| | Sbjct 775 AAACCTATACCCCTATGCACGCTTGGTTTGCTATCAACTCTGCTTTATCGCCAGTTGTCG 834 Query 1173 AAGTAAAGGGACTTCATCAGTATGATTGGCCTCAAGAAGTGAACTTCAAAGTTAGAGAGA 1232 ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 835 AAGTAAAGGGACTTCATCAGTATGATTGGCCTCGAGAAGTGAATTTCAAAGTTAGAGAGA 894 Query 1233 TGCTGGACATTCACCGCTTAATTTGGAGACGACATTATCAAAATTTGAAAGACTCTGATT 1292 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 895 TGCTGGACATTCACCGCTTGATTTGGAGACGGCATTATCAAAATTTGAAAGACTCTGATT 954 Query 1293 TTAGTTTTGTTGAGGGTACTCATGAGCAGTCCTTGCAAGCTCTAAATCCTAGCTGCCTTG 1352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 955 TTAGTTTTGTTGAGGGTACTCATGAGCAGTCCTTGCAAGCTCTAAATCCTAGCTGCCTCG 1014 Query 1353 CCCTTTTGAACCATCTTCGCATTTACATTCCCAAGCTTTTTCCAGATCTCAACAAGATAG 1412 |||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 1015 CCCTTTTGAATCATCTTCGCATCTACGTTCCCAAGCTTTTTCCAGATCTCAACAAGATAG 1074 Query 1413 TGTTGTTGGATGATGATGTAGTAGTACAGAGCGATCTTTCGTCTTTATGGGAAACGGATC 1472 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1075 TGTTGTTGGATGATGATGTAGTAGTACAGAGCGATCTTTCATCTTTATGGGAAACGGATC 1134 Query 1473 TCAACGGTAAAGTTGTTGGTGCTGTCGTTGATTCGTGGTGCGGAGACAACTGTTGCCCCG 1532 |||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||| | Sbjct 1135 TCAATGGTAAAGTTGCTGGTGCTGTCGTTGATTCGTGGTGCGGAAACAACTGTTGCCCGG 1194 Query 1533 GAAGAAAATACAAAGACTATTTCAACTTCTCACATCCTTTGATCTCATCAAACTTAGTTC 1592 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1195 GAAGAAAATACAAAGACTATTTCAACTTCTCACATCCTCTGATCTCATCAAACTTAGTTC 1254 Query 1593 AAGAAGACTGTGCTTGGCTTTCTGGTATGAATGTCTTTGATCTCAAAGCCTGGAGACAAA 1652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1255 AAGAAGACTGTGCTTGGCTTTCTGGTATGAATGTCTTTGATCTCAAAGCCTGGAGACAAA 1314 Query 1653 CCAATATTACTGAAGCTTACTCTACATGGCTAAGACTCAGTGTTAGGTCAGGACTACAAT 1712 ||||||| || |||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 1315 CCAATATCACAGAAGCTTACTCTACATGGTTAAGACTCAGTGTTAGTTCAGGACTACAAT 1374 Query 1713 TATGGCAACCAGGGGCTTTACCACCGACATTACTTGCTTTCAAAGGACTTACACAGTCTC 1772 ||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 1375 TATGGCAACCAGGAGCTTTACCACCGACATTACTTGCTTTCAAAGGACTCATACAGTATC 1434 Query 1773 TTGAACCATCATGGCACGTCGCTGGACTAGGTTCTCGATCCGTAAAATCCCCTCAAGAGA 1832 ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 1435 TTGAACCATCATGGCACGTCGCTGGACTAGGTTCTCGATCCATAAAATGCCCTCAAGAGA 1494 Query 1833 TTCTGAAATCTGCTTCGGTTTTACATTTCAGCGGTCCAGCAAAACCGTGGCTAGAGATCA 1892 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1495 TTCTGAAATCTGCTGCGGTTTTACATTTCAGCGGTCCAGCAAAACCGTGGCTAGAGATCA 1554 Query 1893 GTAACCCTGAGGTACGATCTCTTTGGTATAGATACGTAAATTCCTCCGACATCTTCGTTa 1952 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1555 GTAACCCTGAGGTACGATCTATTTGGTATAGATACGTAAATTCCTCCGACATCTTCGTTA 1614 Query 1953 gaaaatgcaaaatcatgaactgagactaaaaaacagattagaa 1995 ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1615 GAAAATGCAAAATCATGAACTGAGATTAAAAAACAGATTAGAA 1657 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88864541585 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5