BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G58830.1 Length=1155 Score E Sequences producing significant alignments: (Bits) Value Ahg486341 jgi|Araly1|486341|fgenesh2_kg.5__2333__AT3G58830.1 1762 0.0 > Ahg486341 jgi|Araly1|486341|fgenesh2_kg.5__2333__AT3G58830.1 Length=1138 Score = 1762 bits (954), Expect = 0.0 Identities = 1093/1157 (94%), Gaps = 22/1157 (2%) Strand=Plus/Plus Query 1 ATCGATGGCTGCCTCCACTACTTCCTACTACCCAATCCCCAAAAGCTTCCTTCTTTCTCC 60 |||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||| Sbjct 1 ATCGATGGCTGCCTCCACTAGTTTCTACTACCCAATCCCCAAAAGTTTCCTTCTTTCTCC 60 Query 61 TCCTCGTCACAAACGAAACCCTAATCTCATCTCCTGCTCCACCAAACCCATTTGCTCTCC 120 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCCCCGTCACAAACGAAACCCTAATCTCATCTCCTGCTCCACCAAACCCATTTGCTCTCC 120 Query 121 TCCTCCTCCTTCGTCTTCTTCTTCGTCTCCTCTGCAAACGACGACAACCCATCGAAGCCA 180 | | || |||||| || | | ||||||||||||| |||||||||||| |||| Sbjct 121 T-C-CC-CCTTCG---------TC-T-T-CTCTGCAAACGACAACAACCCATCGAGGCCA 165 Query 181 AAAGCAGAATCTGCGTCTACCCACGTTTGAAGATTCGTTTCTTCTTTACCAATTTAGCTC 240 |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 166 AAAGCAGAATCTGCGTTTACCCACGTTTGAAGATTCGTTTCTTCTTTACCAATTCAGCTC 225 Query 241 TCCCACCGAAGACCCAGGATTCTCTAACCGGATCCCGGAACAATTCGACGGAGAGCCACG 300 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 226 TCCCACCGAAGACCCAGGATTTTCTAACCGGATCCCTGAACAATTCGACGGAGAGCCACG 285 Query 301 CGAATTGGTGTTGCCGAGAGTAGAAGACAACAACAAAGGGTTGGCAATTTCGTCGAACAT 360 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 286 CGAATTGGTGTTGCCGAGAGTAGAAGACAACAACAAGGGGTTGGCGATTTCGTCGAACAT 345 Query 361 GTGGTGGGCAGATCTGAAAGCGGCTCTTGGGCAACGAATCAATATTGAGGGTATCGTTTC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 346 GTGGTGGGCAGATCTGAAAGCGGCTCTTGGGCAACGAATCAATATTGAGGGTATCGTTTC 405 Query 421 TTCGGTCTCCGTTGTTGTTAAAGATCGTCAATTTGTTCTTCCGCATGTTTCTGTGAAAGA 480 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 406 TTCGGTCTCTGTTGTTGTTAAAGATCGTCAATTGGTTCTTCCGCATGTTTCTGTGAAAGA 465 Query 481 TTTAAGATACATTGATTGGGAAGTGCTGAAGAGAAAGGGCTTCAAAGGTGTAGTGTTTGA 540 |||||| ||||||||||||| || ||||||||||||||| |||||||||||||||||||| Sbjct 466 TTTAAGGTACATTGATTGGGGAGAGCTGAAGAGAAAGGGATTCAAAGGTGTAGTGTTTGA 525 Query 541 TAAAGATAACACTCTTACGGCTCCTTATTCTCTAGCGATTTGGCCACCATTACGTCCTTC 600 ||| ||||| ||||||||||||||||||||||||||||||||||||||| | || ||||| Sbjct 526 TAAGGATAATACTCTTACGGCTCCTTATTCTCTAGCGATTTGGCCACCACTCCGGCCTTC 585 Query 601 CATTGAGCGGTGTAAAGCCGTTTTTGGCCATGACATCGCCGTGTTTAGCAATTCCGCTGG 660 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 586 TATTGAGCGGTGTAAAGCCGTGTTTGGCCATGACATCGCCGTGTTTAGCAATTCCGCTGG 645 Query 661 GCTCACGGAATACGATCATGATGATTCGAAAGCTAAAGCATTGGAGGCTGAAATAGGAAT 720 ||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 646 GCTTACGGAATATGATCATGATGATTCGAAAGCTAAAGCATTGGAGGCTGAGATAGGAAT 705 Query 721 TAGAGTGTTGAGGCATAGAGTGAAGAAGCCTGCAGGAACTGCTGAAGAAGTTGAGAAACA 780 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 706 TAGAGTGTTGAGGCATAGAGTGAAGAAGCCTGCGGGAACTGCTGAAGAAGTCGAGAAACA 765 Query 781 CTTTGGTTGCACATCTTCAGAGCTAATCATGGTGGGTGATCGACCTTTCACAGATATCGT 840 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 766 CTTTGGTTGCACATCTTCGGAGCTAATCATGGTGGGTGATCGACCTTTCACAGATATCGT 825 Query 841 TTACGGGAACAGAAACGGATTTCTAACCGTATTAACCGAGCCTTTGAGTCGAGCTGAGGA 900 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 826 TTACGGGAACAGAAACGGATTTCTAACAGTATTAACCGAGCCGTTGAGTCGAGCTGAGGA 885 Query 901 GCCTTTCATTGTTAGACAGGTGAGGAGATTAGAGTTGGCCTTGTTGAAACGTTGGTTGAG 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 886 GCCTTTCATTGTTAGACAGGTGAGGAGATTAGAGTTGGCCTTGTTGAAACGTTGGTTGAG 945 Query 961 AAAAGGTTTGAAGCCTGTGGATCATAGTTTGGTATCAGATATAACACAGTTTGTTAAAGT 1020 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 946 AAAAGGTTTGAAGCCTGTGGATCATAGTTTGGTATCAGATGTAACACAGTTTGTTAAAGA 1005 Query 1021 TCCATCAGATTTGTAAGAAGGATTCTCATTTTGCTATTGCAA-CAACAACTTTGTTCCTT 1079 |||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| Sbjct 1006 TCCATCAGATTTGTAAGAAGGATTCTCAGTTTGCTA----AATCAACAACTTTGTTCCTT 1061 Query 1080 GttttttttttGTA-ATTG-AAATTTTGAGTTTGGGTTTTGGCCAAATGCATCATGATAA 1137 |||||||||||||| | || ||||||||| |||||||||||||||| ||||||| ||| | Sbjct 1062 GTTTTTTTTTTGTATAATGGAAATTTTGACTTTGGGTTTTGGCCAAGTGCATCAAGATGA 1121 Query 1138 AAAATGCCATTTTTGAT 1154 |||||||||||||||| Sbjct 1122 GAAATGCCATTTTTGAT 1138 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43078896210 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5