BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G58840.1
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486343 jgi|Araly1|486343|fgenesh2_kg.5__2335__AT3G58840.2 1495 0.0
> Ahg486343 jgi|Araly1|486343|fgenesh2_kg.5__2335__AT3G58840.2
Length=997
Score = 1495 bits (809), Expect = 0.0
Identities = 940/1003 (94%), Gaps = 9/1003 (1%)
Strand=Plus/Plus
Query 59 GATTAGCCGATCCCTCCACCGGAAAATCGGAAGTAGAAGCGTAAATGGCGGATGTTGAAG 118
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 1 GATTAGCCGATCCCTCCACCGGAAAATC---AGAAGCAGCGTAAATGGCGGATGTTGAAG 57
Query 119 ATCGTGCGGCGAAGGGGATCTCTGACTACGATCAAGGTGGTGTAAAGACGACGGAACTGG 178
||||||| || |||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 58 ATCGTGCCGCAAAGGGGATCTCTGACTACGATCAATCCAGTGGAAAGACGACGGAACTGG 117
Query 179 AAAGGAAGATTGAGGATATGGAGAACAAGAATCAGGAGCTCACGAGAGAGAATCGTGAAT 238
||||||||||||| || ||||||||||||||||||||||| || | ||||||||| || |
Sbjct 118 AAAGGAAGATTGATGAAATGGAGAACAAGAATCAGGAGCTTACTAAAGAGAATCGAGAGT 177
Query 239 TGAAGGAGAGGTTAGAGAGGCTTACGGGAGAAATTgaagagatgaaagacgtagaagcgg 298
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 178 TGAAGGAGAGGTTAGAGAGGCTTACGGGAGAAATTGAAGAGATGAAAGGTGTAGAAGCGG 237
Query 299 agatgaatcagagattcggagagatggagaaagagatcgaggagtacgaggaagagaaga 358
|||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||
Sbjct 238 AGATGAATCAGAGATTCGGAGAAATGGAGGAAGAGATCGAGGATTACGAGGAAGAGAAGA 297
Query 359 agGCTTTGGAAGCTATTTCTACTAGAGCTGTGGAGCTTGAAACTGAGGTGTCGAATCTTC 418
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 298 AGGCTTTGGAATCTATTTCTACGAGAGCTGTGGAGCTTGAAACTGAGGTGTCGAATCTTC 357
Query 419 ATGACGATCTGATCACTTCCTTGAACGGAGTGGATAAGACGGCGGAAGAAGTGGCGGAGC 478
| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 358 AGGACGATCTGATCACTTCTTTGAACGGCGTGGATAAGACGGCGGAAGAAGTCGCGGAGC 417
Query 479 TGAAGAAAGCGTTGGCGGAGATAGTGGAGAAGCTGGAGGGGTGTGAGAAGGAAGCTGAGG 538
| |||||||| |||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 418 TTAAGAAAGCCTTGGCGGAGAAAGGGGAGAAGCTGGAGGGGTATGAGAAGGAAGCTGAGG 477
Query 539 GTTTAAGGAAAGATAGAGCTGAGGTTGAGAAGAGGGTTAGGGATTTGGAAAGGAAGATTG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GTTTAAGGAAAGATAGAGCTGAGGTTGAGAAGAGGGTTAGGGATTTGGAAAGGAAGATTG 537
Query 599 GGGTTTTGGAAGTGAGGGAAATGGAGgagaagagtaagaaacttagatcagaagaggaaa 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 538 GGGTTTTGGAAGTGAGGGAAATGGAGGAGAAGAGTAAGAAACTTAGATCAGAAGAGGAGA 597
Query 659 tgagggaga-tagatgatgagaaaaagagagagattgaggaattgcagaagaCAGTCATT 717
||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 598 TGAGGGA-ACTAGCGGATGAGAAAAAGAGAGAGATTGACGAATTGCAGAAGACAGTCGGT 656
Query 718 GTTTTGAATCTGGAATTGGTGAAGAATGTAGAAGAATTGAAGAAATGGAAGTCTAAGAAG 777
| |||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||
Sbjct 657 GCTTTGAATCTGGAATTGGTGAAGAATGTAGAGGAATTGGCGAAATGGAAGTCTGAGAAG 716
Query 778 AAGCTCACGGAGGAAGCTTTGAGTGAAACTCAAAA-ACGAGAGAAGGAGCTGGAGTT-GA 835
||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||| ||
Sbjct 717 AAGCTGACGGAGGAAGCTTTGAGTGAAACTCAAAAGA-GAGAGAAGGAGATGGAGTTAGA 775
Query 836 AGAAGGACGAGTTACTGAAGAAGGTTGAGGAAGGTAACAAGACGGTTTTTGCTTTGAATG 895
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 776 -GAAGGACGAGTTGCTGAAGAAGGTTGAGGAAGGTAACAAGACGGTTTTTGGGTTGAATG 834
Query 896 AGAGAACCATGAAGCCTAGTAATGGAGTCAGAGACACAAATGGTGGTGACCAAAAGGGTT 955
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AGAGAACTATGAAGCCTAGTAATGGAGTCAGAGACACAAATGGTGGTGACCAAAAGGGTT 894
Query 956 CCTTGGAAGCTGAGTATCAGTGGCCAGTGGTTGCTGCTGGATCAGTTGGAGCTGCTGGTT 1015
|||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 895 CCTTGGAAGCAGAGTTTCAGTGGCCCTTGGTTGCTGCTGGATCAGTTGGAGCTGCTGGTT 954
Query 1016 TGGTTGCAGCGACCTTTTTCGTCTGCTATTCTAAGCTAAGGTG 1058
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct 955 TGGTTGCAGCGACCTTGTTCGTCTGCTATTCTAAGCTAAGGTG 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46548081657
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5